Wall clock time and date at job start Wed Apr 1 2020 04:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35128 * 125.61710 * 2 1 4 4 C 1.40359 * 107.11863 * 179.84894 * 3 2 1 5 5 C 1.50698 * 126.64996 * 180.15410 * 4 3 2 6 6 C 1.36547 * 106.70412 * 0.40277 * 4 3 2 7 7 C 1.46656 * 125.98594 * 179.77152 * 6 4 3 8 8 O 1.21698 * 120.00182 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99896 * 180.02562 * 7 6 4 10 10 C 1.47014 * 125.64671 * 359.69374 * 9 7 6 11 11 C 1.54322 * 107.27350 * 180.96998 * 10 9 7 12 12 C 1.55147 * 102.86483 * 22.52154 * 11 10 9 13 13 H 1.09009 * 111.03639 * 82.39261 * 12 11 10 14 14 N 1.46899 * 111.00918 * 206.23007 * 12 11 10 15 15 C 1.46901 * 110.99987 * 297.95788 * 14 12 11 16 16 C 1.53232 * 109.34254 * 172.74174 * 15 14 12 17 17 N 1.47077 * 108.52086 * 53.82758 * 16 15 14 18 18 C 1.36939 * 120.88536 * 128.83750 * 17 16 15 19 19 H 1.07999 * 120.00383 * 206.62837 * 18 17 16 20 20 C 1.38817 * 119.99636 * 26.62313 * 18 17 16 21 21 N 1.31620 * 120.00081 * 17.04555 * 20 18 17 22 22 Si 1.86795 * 119.99877 * 197.04354 * 20 18 17 23 23 H 1.48500 * 109.47246 * 89.99956 * 22 20 18 24 24 H 1.48506 * 109.47232 * 210.00271 * 22 20 18 25 25 H 1.48502 * 109.47368 * 329.99667 * 22 20 18 26 26 C 1.47084 * 118.23662 * 308.81607 * 17 16 15 27 27 C 1.46893 * 111.00416 * 173.64966 * 14 12 11 28 28 C 1.47424 * 125.64529 * 180.02562 * 9 7 6 29 29 O 1.33927 * 125.61528 * 180.29911 * 2 1 3 30 30 H 1.09003 * 109.46831 * 179.71886 * 1 2 3 31 31 H 1.09001 * 109.47190 * 59.72348 * 1 2 3 32 32 H 1.09000 * 109.47352 * 299.72041 * 1 2 3 33 33 H 1.08008 * 126.44069 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47329 * 270.29712 * 5 4 3 35 35 H 1.09000 * 109.47001 * 30.29731 * 5 4 3 36 36 H 1.09001 * 109.47042 * 150.29620 * 5 4 3 37 37 H 1.09004 * 109.88250 * 300.51049 * 10 9 7 38 38 H 1.08995 * 109.88646 * 61.67588 * 10 9 7 39 39 H 1.08997 * 110.92028 * 264.10927 * 11 10 9 40 40 H 1.09002 * 110.74095 * 140.85623 * 11 10 9 41 41 H 1.09009 * 109.48923 * 292.70112 * 15 14 12 42 42 H 1.09003 * 109.49742 * 52.77457 * 15 14 12 43 43 H 1.09000 * 109.62885 * 294.11928 * 16 15 14 44 44 H 1.08999 * 109.79064 * 173.62809 * 16 15 14 45 45 H 0.96998 * 119.99819 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.62397 * 291.47398 * 26 17 16 47 47 H 1.09003 * 109.79030 * 170.99270 * 26 17 16 48 48 H 1.08999 * 109.49647 * 307.21364 * 27 14 12 49 49 H 1.09007 * 109.49041 * 67.29662 * 27 14 12 50 50 H 1.09006 * 110.36551 * 274.66683 * 28 9 7 51 51 H 1.08992 * 110.37265 * 36.88357 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 0.0035 5 6 4.8617 1.5143 0.0081 6 6 3.5823 -0.7116 -0.0037 7 6 4.7414 -1.6101 -0.0079 8 8 5.8680 -1.1499 -0.0055 9 7 4.5590 -2.9454 -0.0155 10 6 3.2593 -3.6326 -0.0139 11 6 3.5430 -5.1495 0.0002 12 6 4.9780 -5.2271 0.5849 13 1 4.9602 -5.1754 1.6736 14 7 5.6672 -6.4418 0.1295 15 6 4.9685 -7.6484 0.5921 16 6 5.6091 -8.8834 -0.0500 17 7 7.0536 -8.8571 0.2254 18 6 7.6879 -9.9483 0.7565 19 1 8.5870 -9.8191 1.3408 20 6 7.1752 -11.2207 0.5440 21 7 6.3012 -11.4258 -0.4185 22 14 7.7258 -12.6419 1.6239 23 1 6.8268 -12.7463 2.8012 24 1 7.6709 -13.9054 0.8455 25 1 9.1177 -12.4040 2.0836 26 6 7.7989 -7.6277 -0.0852 27 6 7.0722 -6.4421 0.5584 28 6 5.6297 -3.9588 -0.0200 29 8 2.2869 -1.0887 -0.0057 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3634 0.5095 0.8925 33 1 1.9612 2.1260 -0.0004 34 1 5.1599 1.7274 -1.0184 35 1 4.6512 2.4496 0.5269 36 1 5.6684 0.9889 0.5192 37 1 2.6924 -3.3514 0.8737 38 1 2.7001 -3.3703 -0.9119 39 1 3.5152 -5.5600 -1.0092 40 1 2.8348 -5.6687 0.6458 41 1 5.0468 -7.7205 1.6770 42 1 3.9182 -7.5929 0.3058 43 1 5.4413 -8.8648 -1.1269 44 1 5.1721 -9.7879 0.3731 45 1 5.9426 -12.3148 -0.5667 46 1 7.8416 -7.4885 -1.1654 47 1 8.8104 -7.6983 0.3150 48 1 7.5476 -5.5119 0.2475 49 1 7.1211 -6.5311 1.6437 50 1 5.9634 -4.1536 -1.0392 51 1 6.4663 -3.6295 0.5960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052007131.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:11 Heat of formation + Delta-G solvation = 17.905078 kcal Electronic energy + Delta-G solvation = -31022.653164 eV Core-core repulsion = 26924.582806 eV Total energy + Delta-G solvation = -4098.070358 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.02657 -40.10105 -38.48492 -36.87965 -34.51547 -34.07191 -32.81264 -31.70923 -30.39742 -30.20054 -28.78905 -28.25902 -27.34565 -25.79216 -23.85114 -22.85836 -22.36744 -21.71399 -20.99338 -20.32271 -19.48391 -19.15492 -17.79686 -17.16729 -16.81509 -16.22887 -15.93446 -15.36915 -14.97703 -14.64859 -14.35602 -14.13397 -13.97455 -13.83708 -13.59062 -13.52435 -13.44350 -13.36836 -13.24045 -13.17105 -13.02100 -12.77973 -12.65620 -12.59714 -12.31995 -11.92623 -11.82366 -11.30137 -11.22162 -11.05235 -10.88323 -10.75494 -10.43714 -10.30416 -10.26541 -10.04513 -9.93657 -9.73664 -9.60398 -8.96513 -8.59606 -8.51308 -7.91211 -6.67499 -5.78593 -3.19656 0.78783 1.99682 2.30362 2.81854 2.97253 3.37553 3.44581 3.45792 4.11233 4.21799 4.34997 4.48558 4.50016 4.60291 4.65068 4.87139 4.97059 4.99749 5.07749 5.19495 5.22379 5.28335 5.31018 5.39066 5.44472 5.46063 5.48472 5.54768 5.70554 5.79979 5.80942 5.83322 5.88236 5.89187 5.94593 6.01744 6.13264 6.16084 6.19397 6.25122 6.32272 6.51879 6.63809 6.68217 6.92681 7.21038 7.26007 7.54428 7.61578 7.68035 7.80932 7.85990 8.43099 9.21009 9.84208 10.42578 11.30240 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.002060 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.164676 B =13587.897919 C =14388.911793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.019 3.981 3 C -0.224 4.224 4 C -0.084 4.084 5 C -0.095 4.095 6 C -0.082 4.082 7 C 0.616 3.384 8 O -0.520 6.520 9 N -0.608 5.608 10 C 0.106 3.894 11 C -0.123 4.123 12 C 0.069 3.931 13 H 0.051 0.949 14 N -0.520 5.520 15 C 0.037 3.963 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.066 0.934 20 C 0.000 4.000 21 N -0.904 5.904 22 Si 0.903 3.097 23 H -0.288 1.288 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.117 3.883 29 O -0.157 6.157 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.084 0.916 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.112 24.410 0.978 27.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.034 4.034 3 C -0.243 4.243 4 C -0.087 4.087 5 C -0.151 4.151 6 C -0.133 4.133 7 C 0.405 3.595 8 O -0.399 6.399 9 N -0.341 5.341 10 C -0.017 4.017 11 C -0.161 4.161 12 C -0.041 4.041 13 H 0.069 0.931 14 N -0.246 5.246 15 C -0.092 4.092 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.733 3.267 23 H -0.215 1.215 24 H -0.218 1.218 25 H -0.205 1.205 26 C 0.022 3.978 27 C -0.088 4.088 28 C -0.005 4.005 29 O -0.053 6.053 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.172 0.828 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.103 0.897 51 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -12.636 24.212 0.414 27.314 hybrid contribution 0.068 -0.614 1.413 1.542 sum -12.567 23.598 1.828 26.798 Atomic orbital electron populations 1.20418 0.84549 1.04554 1.03972 1.22799 0.94312 0.84264 1.02020 1.21440 0.91822 0.99805 1.11271 1.20605 0.96400 0.92099 0.99603 1.20428 0.93894 0.97886 1.02925 1.21704 0.81845 0.93874 1.15897 1.16108 0.86100 0.79944 0.77305 1.90855 1.22170 1.75122 1.51764 1.48286 1.09289 1.04546 1.72021 1.22106 0.84897 0.92560 1.02154 1.22712 0.96371 0.93508 1.03485 1.22744 0.93771 0.90686 0.96912 0.93088 1.62019 1.02398 1.00565 1.59596 1.22913 0.97246 0.91493 0.97578 1.20868 0.83471 0.93407 0.97066 1.44130 1.03402 1.10714 1.73648 1.19210 1.09583 0.84530 1.24699 0.91619 1.25026 1.00128 0.97294 0.97352 1.70027 1.33797 1.21320 1.29682 0.86280 0.78367 0.82015 0.80051 1.21533 1.21759 1.20476 1.20966 0.94040 0.85898 0.96849 1.22681 0.88415 0.99916 0.97809 1.22291 0.89743 0.85924 1.02508 1.84104 1.15865 1.34426 1.70950 0.90144 0.89198 0.89224 0.82801 0.90768 0.91505 0.89458 0.91212 0.90942 0.89004 0.89983 0.95637 0.91870 0.95531 0.89275 0.93634 0.95593 0.92559 0.91807 0.95268 0.89738 0.90319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.41 36.01 0.37 0.04 16 2 C 0.02 0.16 7.31 -35.41 -0.26 -0.10 16 3 C -0.22 -1.96 10.72 -39.89 -0.43 -2.39 16 4 C -0.08 -0.93 6.20 -104.44 -0.65 -1.58 16 5 C -0.09 -0.93 9.82 36.00 0.35 -0.58 16 6 C -0.08 -1.02 6.95 -36.80 -0.26 -1.28 16 7 C 0.62 8.80 7.82 -12.86 -0.10 8.70 16 8 O -0.52 -8.56 14.99 5.19 0.08 -8.48 16 9 N -0.61 -8.00 3.33 -172.09 -0.57 -8.58 16 10 C 0.11 1.15 5.54 -3.07 -0.02 1.13 16 11 C -0.12 -1.41 5.35 -24.90 -0.13 -1.54 16 12 C 0.07 0.95 2.71 -65.58 -0.18 0.77 16 13 H 0.05 0.73 8.14 -51.92 -0.42 0.31 16 14 N -0.52 -8.82 4.53 -223.80 -1.01 -9.83 16 15 C 0.04 0.68 5.48 -3.70 -0.02 0.66 16 16 C 0.18 4.20 5.42 -3.61 -0.02 4.18 16 17 N -0.60 -14.97 3.04 -172.02 -0.52 -15.49 16 18 C -0.25 -6.87 9.63 -15.06 -0.15 -7.02 16 19 H 0.07 1.78 7.88 -52.49 -0.41 1.36 16 20 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 21 N -0.90 -26.07 11.15 55.49 0.62 -25.45 16 22 Si 0.90 21.66 29.59 -169.99 -5.03 16.63 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 27 C 0.04 0.73 5.48 -3.71 -0.02 0.71 16 28 C 0.12 1.61 5.32 -2.54 -0.01 1.59 16 29 O -0.16 -1.70 8.28 5.00 0.04 -1.66 16 30 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.15 0.94 8.06 -52.48 -0.42 0.52 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 1.01 6.44 -51.93 -0.33 0.68 16 37 H 0.07 0.71 7.69 -51.93 -0.40 0.31 16 38 H 0.07 0.74 7.78 -51.93 -0.40 0.33 16 39 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.08 0.85 7.93 -51.93 -0.41 0.43 16 41 H 0.03 0.50 8.14 -51.92 -0.42 0.07 16 42 H 0.06 1.04 6.87 -51.93 -0.36 0.68 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 2.34 6.11 -51.93 -0.32 2.02 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 48 H 0.06 0.99 6.79 -51.93 -0.35 0.64 16 49 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 50 H 0.08 1.22 8.14 -51.93 -0.42 0.79 16 51 H 0.08 1.12 7.74 -51.93 -0.40 0.71 16 LS Contribution 399.28 15.07 6.02 6.02 Total: -1.00 -31.95 399.28 -10.44 -42.38 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -8.44 Total: -1.90 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.62 Total: 6.37 kcal Atomic # 7 Polarization: -57.87 SS G_CDS: -1.49 Total: -59.35 kcal Atomic # 8 Polarization: -10.26 SS G_CDS: 0.12 Total: -10.14 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.03 Total: 16.63 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.95 -10.44 -42.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052007131.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.289 kcal (2) G-P(sol) polarization free energy of solvation -31.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds