Wall clock time and date at job start Wed Apr 1 2020 04:24:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.35128 * 125.61710 * 2 1
4 4 C 1.40359 * 107.11863 * 179.84894 * 3 2 1
5 5 C 1.50698 * 126.64996 * 180.15410 * 4 3 2
6 6 C 1.36547 * 106.70412 * 0.40277 * 4 3 2
7 7 C 1.46656 * 125.98594 * 179.77152 * 6 4 3
8 8 O 1.21698 * 120.00182 * 359.97438 * 7 6 4
9 9 N 1.34781 * 119.99896 * 180.02562 * 7 6 4
10 10 C 1.47014 * 125.64671 * 359.69374 * 9 7 6
11 11 C 1.54322 * 107.27350 * 180.96998 * 10 9 7
12 12 C 1.55147 * 102.86483 * 22.52154 * 11 10 9
13 13 H 1.09009 * 111.03639 * 82.39261 * 12 11 10
14 14 N 1.46899 * 111.00918 * 206.23007 * 12 11 10
15 15 C 1.46901 * 110.99987 * 297.95788 * 14 12 11
16 16 C 1.53232 * 109.34254 * 172.74174 * 15 14 12
17 17 N 1.47077 * 108.52086 * 53.82758 * 16 15 14
18 18 C 1.36939 * 120.88536 * 128.83750 * 17 16 15
19 19 H 1.07999 * 120.00383 * 206.62837 * 18 17 16
20 20 C 1.38817 * 119.99636 * 26.62313 * 18 17 16
21 21 N 1.31620 * 120.00081 * 17.04555 * 20 18 17
22 22 Si 1.86795 * 119.99877 * 197.04354 * 20 18 17
23 23 H 1.48500 * 109.47246 * 89.99956 * 22 20 18
24 24 H 1.48506 * 109.47232 * 210.00271 * 22 20 18
25 25 H 1.48502 * 109.47368 * 329.99667 * 22 20 18
26 26 C 1.47084 * 118.23662 * 308.81607 * 17 16 15
27 27 C 1.46893 * 111.00416 * 173.64966 * 14 12 11
28 28 C 1.47424 * 125.64529 * 180.02562 * 9 7 6
29 29 O 1.33927 * 125.61528 * 180.29911 * 2 1 3
30 30 H 1.09003 * 109.46831 * 179.71886 * 1 2 3
31 31 H 1.09001 * 109.47190 * 59.72348 * 1 2 3
32 32 H 1.09000 * 109.47352 * 299.72041 * 1 2 3
33 33 H 1.08008 * 126.44069 * 359.97438 * 3 2 1
34 34 H 1.08999 * 109.47329 * 270.29712 * 5 4 3
35 35 H 1.09000 * 109.47001 * 30.29731 * 5 4 3
36 36 H 1.09001 * 109.47042 * 150.29620 * 5 4 3
37 37 H 1.09004 * 109.88250 * 300.51049 * 10 9 7
38 38 H 1.08995 * 109.88646 * 61.67588 * 10 9 7
39 39 H 1.08997 * 110.92028 * 264.10927 * 11 10 9
40 40 H 1.09002 * 110.74095 * 140.85623 * 11 10 9
41 41 H 1.09009 * 109.48923 * 292.70112 * 15 14 12
42 42 H 1.09003 * 109.49742 * 52.77457 * 15 14 12
43 43 H 1.09000 * 109.62885 * 294.11928 * 16 15 14
44 44 H 1.08999 * 109.79064 * 173.62809 * 16 15 14
45 45 H 0.96998 * 119.99819 * 180.02562 * 21 20 18
46 46 H 1.08998 * 109.62397 * 291.47398 * 26 17 16
47 47 H 1.09003 * 109.79030 * 170.99270 * 26 17 16
48 48 H 1.08999 * 109.49647 * 307.21364 * 27 14 12
49 49 H 1.09007 * 109.49041 * 67.29662 * 27 14 12
50 50 H 1.09006 * 110.36551 * 274.66683 * 28 9 7
51 51 H 1.08992 * 110.37265 * 36.88357 * 28 9 7
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.2939 1.0985 0.0000
4 6 3.6250 0.6532 0.0035
5 6 4.8617 1.5143 0.0081
6 6 3.5823 -0.7116 -0.0037
7 6 4.7414 -1.6101 -0.0079
8 8 5.8680 -1.1499 -0.0055
9 7 4.5590 -2.9454 -0.0155
10 6 3.2593 -3.6326 -0.0139
11 6 3.5430 -5.1495 0.0002
12 6 4.9780 -5.2271 0.5849
13 1 4.9602 -5.1754 1.6736
14 7 5.6672 -6.4418 0.1295
15 6 4.9685 -7.6484 0.5921
16 6 5.6091 -8.8834 -0.0500
17 7 7.0536 -8.8571 0.2254
18 6 7.6879 -9.9483 0.7565
19 1 8.5870 -9.8191 1.3408
20 6 7.1752 -11.2207 0.5440
21 7 6.3012 -11.4258 -0.4185
22 14 7.7258 -12.6419 1.6239
23 1 6.8268 -12.7463 2.8012
24 1 7.6709 -13.9054 0.8455
25 1 9.1177 -12.4040 2.0836
26 6 7.7989 -7.6277 -0.0852
27 6 7.0722 -6.4421 0.5584
28 6 5.6297 -3.9588 -0.0200
29 8 2.2869 -1.0887 -0.0057
30 1 -0.3633 -1.0277 -0.0050
31 1 -0.3633 0.5181 -0.8875
32 1 -0.3634 0.5095 0.8925
33 1 1.9612 2.1260 -0.0004
34 1 5.1599 1.7274 -1.0184
35 1 4.6512 2.4496 0.5269
36 1 5.6684 0.9889 0.5192
37 1 2.6924 -3.3514 0.8737
38 1 2.7001 -3.3703 -0.9119
39 1 3.5152 -5.5600 -1.0092
40 1 2.8348 -5.6687 0.6458
41 1 5.0468 -7.7205 1.6770
42 1 3.9182 -7.5929 0.3058
43 1 5.4413 -8.8648 -1.1269
44 1 5.1721 -9.7879 0.3731
45 1 5.9426 -12.3148 -0.5667
46 1 7.8416 -7.4885 -1.1654
47 1 8.8104 -7.6983 0.3150
48 1 7.5476 -5.5119 0.2475
49 1 7.1211 -6.5311 1.6437
50 1 5.9634 -4.1536 -1.0392
51 1 6.4663 -3.6295 0.5960
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001052007131.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:24:10
Heat of formation + Delta-G solvation = -1.842208 kcal
Electronic energy + Delta-G solvation = -31023.509470 eV
Core-core repulsion = 26924.582806 eV
Total energy + Delta-G solvation = -4098.926664 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.09 seconds
Orbital eigenvalues (eV)
-43.76487 -41.18346 -39.81057 -38.22959 -35.91890 -35.09609 -33.58211 -33.23167
-31.85154 -31.67439 -29.95439 -28.92293 -28.47966 -27.27069 -25.16712 -24.50685
-23.75536 -22.42573 -21.94695 -21.50860 -20.82214 -20.32555 -18.87350 -18.69450
-17.84453 -17.43999 -16.93947 -16.80057 -16.17946 -15.96161 -15.63816 -15.50780
-15.28583 -15.19533 -14.97966 -14.65463 -14.54937 -14.22155 -14.15782 -13.98594
-13.86366 -13.71389 -13.66050 -13.54629 -13.31094 -13.24127 -12.99292 -12.70739
-12.61081 -12.56246 -12.52952 -12.17959 -12.02630 -11.92526 -11.83803 -11.47079
-11.40764 -11.26311 -10.65995 -10.58567 -9.94337 -9.39196 -9.34186 -8.68776
-7.87780 -5.32256 -0.04472 1.30653 1.46568 1.47039 1.47778 1.56833
1.93174 2.00038 2.50589 2.91627 3.24664 3.27270 3.58388 3.59751
3.68524 3.76943 3.80008 4.01739 4.15806 4.23120 4.31738 4.35527
4.45465 4.47186 4.50515 4.56216 4.57561 4.61291 4.66931 4.68715
4.73269 4.74059 4.75762 4.83679 4.87176 4.94733 4.97511 5.00524
5.10272 5.14958 5.18541 5.19687 5.25016 5.37209 5.50726 5.61376
5.70425 5.89496 6.11200 6.19939 6.28188 6.37610 6.83404 7.13674
7.83771 8.37768 9.18936
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.026355 B = 0.002060 C = 0.001945
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1062.164676 B =13587.897919 C =14388.911793
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 C 0.029 3.971
3 C -0.233 4.233
4 C -0.088 4.088
5 C -0.094 4.094
6 C -0.117 4.117
7 C 0.611 3.389
8 O -0.556 6.556
9 N -0.611 5.611
10 C 0.112 3.888
11 C -0.115 4.115
12 C 0.073 3.927
13 H 0.054 0.946
14 N -0.526 5.526
15 C 0.055 3.945
16 C 0.185 3.815
17 N -0.615 5.615
18 C -0.263 4.263
19 H 0.066 0.934
20 C -0.051 4.051
21 N -0.934 5.934
22 Si 0.968 3.032
23 H -0.284 1.284
24 H -0.294 1.294
25 H -0.271 1.271
26 C 0.145 3.855
27 C 0.053 3.947
28 C 0.122 3.878
29 O -0.165 6.165
30 H 0.085 0.915
31 H 0.109 0.891
32 H 0.109 0.891
33 H 0.182 0.818
34 H 0.077 0.923
35 H 0.091 0.909
36 H 0.064 0.936
37 H 0.081 0.919
38 H 0.082 0.918
39 H 0.087 0.913
40 H 0.101 0.899
41 H 0.020 0.980
42 H 0.091 0.909
43 H 0.000 1.000
44 H 0.059 0.941
45 H 0.251 0.749
46 H 0.017 0.983
47 H 0.059 0.941
48 H 0.088 0.912
49 H 0.025 0.975
50 H 0.076 0.924
51 H 0.071 0.929
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -15.306 26.366 1.828 30.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C -0.024 4.024
3 C -0.252 4.252
4 C -0.091 4.091
5 C -0.150 4.150
6 C -0.169 4.169
7 C 0.402 3.598
8 O -0.437 6.437
9 N -0.343 5.343
10 C -0.010 4.010
11 C -0.153 4.153
12 C -0.036 4.036
13 H 0.072 0.928
14 N -0.251 5.251
15 C -0.074 4.074
16 C 0.059 3.941
17 N -0.339 5.339
18 C -0.393 4.393
19 H 0.083 0.917
20 C -0.246 4.246
21 N -0.580 5.580
22 Si 0.796 3.204
23 H -0.211 1.211
24 H -0.221 1.221
25 H -0.196 1.196
26 C 0.020 3.980
27 C -0.076 4.076
28 C 0.000 4.000
29 O -0.061 6.061
30 H 0.104 0.896
31 H 0.128 0.872
32 H 0.128 0.872
33 H 0.199 0.801
34 H 0.095 0.905
35 H 0.109 0.891
36 H 0.083 0.917
37 H 0.100 0.900
38 H 0.100 0.900
39 H 0.106 0.894
40 H 0.119 0.881
41 H 0.038 0.962
42 H 0.109 0.891
43 H 0.018 0.982
44 H 0.077 0.923
45 H 0.060 0.940
46 H 0.035 0.965
47 H 0.077 0.923
48 H 0.106 0.894
49 H 0.043 0.957
50 H 0.094 0.906
51 H 0.089 0.911
Dipole moment (debyes) X Y Z Total
from point charges -14.841 26.190 1.269 30.130
hybrid contribution 0.706 -1.113 1.094 1.713
sum -14.135 25.077 2.363 28.883
Atomic orbital electron populations
1.20671 0.81361 1.05569 1.05820 1.23702 0.95929 0.83556 0.99182
1.21770 0.90570 1.01360 1.11458 1.20980 0.97877 0.91912 0.98323
1.20430 0.92957 0.98511 1.03120 1.21408 0.82156 0.93999 1.19288
1.16402 0.86419 0.80279 0.76727 1.90821 1.23614 1.75770 1.53490
1.48343 1.09905 1.04340 1.71722 1.22166 0.83987 0.91662 1.03213
1.22705 0.94963 0.94183 1.03433 1.22714 0.94939 0.88913 0.97080
0.92830 1.61921 1.02130 1.01185 1.59877 1.22580 0.98227 0.90082
0.96541 1.20652 0.83241 0.94679 0.95552 1.44422 1.04305 1.11342
1.73827 1.19514 1.09668 0.85578 1.24574 0.91677 1.25780 1.00637
0.99640 0.98578 1.70181 1.35088 1.21554 1.31178 0.85254 0.78279
0.78627 0.78193 1.21098 1.22098 1.19560 1.21090 0.94520 0.85845
0.96590 1.22482 0.88895 0.99150 0.97067 1.22133 0.89964 0.86143
1.01791 1.84080 1.15306 1.35452 1.71299 0.89594 0.87227 0.87220
0.80058 0.90470 0.89059 0.91743 0.90025 0.89992 0.89413 0.88097
0.96202 0.89130 0.98161 0.92289 0.94016 0.96539 0.92302 0.89419
0.95720 0.90591 0.91079
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.36 10.41 71.24 0.74 0.38 16
2 C 0.03 0.40 7.31 24.97 0.18 0.59 16
3 C -0.23 -3.44 10.72 22.07 0.24 -3.21 16
4 C -0.09 -1.85 6.20 -19.74 -0.12 -1.97 16
5 C -0.09 -1.78 9.82 71.24 0.70 -1.08 16
6 C -0.12 -2.86 6.95 24.07 0.17 -2.69 16
7 C 0.61 17.53 7.82 86.44 0.68 18.21 16
8 O -0.56 -18.87 14.99 -4.34 -0.07 -18.93 16
9 N -0.61 -15.67 3.33 -816.57 -2.72 -18.39 16
10 C 0.11 2.21 5.54 86.73 0.48 2.69 16
11 C -0.11 -2.38 5.35 31.78 0.17 -2.21 16
12 C 0.07 1.91 2.71 46.30 0.13 2.03 16
13 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16
14 N -0.53 -17.37 4.53 -861.96 -3.90 -21.28 16
15 C 0.05 2.00 5.48 86.38 0.47 2.48 16
16 C 0.18 8.93 5.42 86.35 0.47 9.40 16
17 N -0.61 -31.55 3.04 -698.14 -2.12 -33.67 16
18 C -0.26 -14.68 9.63 84.03 0.81 -13.87 16
19 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16
20 C -0.05 -2.86 4.93 84.86 0.42 -2.45 16
21 N -0.93 -55.33 11.15 21.65 0.24 -55.08 16
22 Si 0.97 45.09 29.59 68.60 2.03 47.12 16
23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16
24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16
25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16
26 C 0.15 6.22 6.69 86.35 0.58 6.80 16
27 C 0.05 1.86 5.48 86.38 0.47 2.33 16
28 C 0.12 3.28 5.32 86.85 0.46 3.74 16
29 O -0.16 -3.26 8.28 -5.01 -0.04 -3.30 16
30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16
31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16
32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16
33 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16
34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16
35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16
36 H 0.06 1.54 6.44 -2.39 -0.02 1.52 16
37 H 0.08 1.45 7.69 -2.38 -0.02 1.43 16
38 H 0.08 1.49 7.78 -2.39 -0.02 1.48 16
39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16
40 H 0.10 1.75 7.93 -2.39 -0.02 1.73 16
41 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16
42 H 0.09 2.82 6.87 -2.39 -0.02 2.80 16
43 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16
44 H 0.06 3.20 6.11 -2.39 -0.01 3.18 16
45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16
46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16
47 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16
48 H 0.09 2.64 6.79 -2.39 -0.02 2.63 16
49 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16
50 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16
51 H 0.07 2.01 7.74 -2.39 -0.02 1.99 16
Total: -1.00 -71.69 399.28 1.38 -70.31
By element:
Atomic # 1 Polarization: 11.13 SS G_CDS: 0.91 Total: 12.05 kcal
Atomic # 6 Polarization: 14.14 SS G_CDS: 7.04 Total: 21.18 kcal
Atomic # 7 Polarization: -119.92 SS G_CDS: -8.50 Total: -128.42 kcal
Atomic # 8 Polarization: -22.12 SS G_CDS: -0.11 Total: -22.23 kcal
Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal
Total: -71.69 1.38 -70.31 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052007131.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 68.467 kcal
(2) G-P(sol) polarization free energy of solvation -71.688 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.221 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.10 seconds