Wall clock time and date at job start Wed Apr 1 2020 04:24:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35128 * 125.61710 * 2 1 4 4 C 1.40359 * 107.11863 * 179.84894 * 3 2 1 5 5 C 1.50698 * 126.64996 * 180.15410 * 4 3 2 6 6 C 1.36547 * 106.70412 * 0.40277 * 4 3 2 7 7 C 1.46656 * 125.98594 * 179.77152 * 6 4 3 8 8 O 1.21698 * 120.00182 * 359.97438 * 7 6 4 9 9 N 1.34781 * 119.99896 * 180.02562 * 7 6 4 10 10 C 1.47014 * 125.64671 * 359.69374 * 9 7 6 11 11 C 1.54322 * 107.27350 * 180.96998 * 10 9 7 12 12 C 1.55147 * 102.86483 * 22.52154 * 11 10 9 13 13 H 1.09009 * 111.03639 * 82.39261 * 12 11 10 14 14 N 1.46899 * 111.00918 * 206.23007 * 12 11 10 15 15 C 1.46901 * 110.99987 * 297.95788 * 14 12 11 16 16 C 1.53232 * 109.34254 * 172.74174 * 15 14 12 17 17 N 1.47077 * 108.52086 * 53.82758 * 16 15 14 18 18 C 1.36939 * 120.88536 * 128.83750 * 17 16 15 19 19 H 1.07999 * 120.00383 * 206.62837 * 18 17 16 20 20 C 1.38817 * 119.99636 * 26.62313 * 18 17 16 21 21 N 1.31620 * 120.00081 * 17.04555 * 20 18 17 22 22 Si 1.86795 * 119.99877 * 197.04354 * 20 18 17 23 23 H 1.48500 * 109.47246 * 89.99956 * 22 20 18 24 24 H 1.48506 * 109.47232 * 210.00271 * 22 20 18 25 25 H 1.48502 * 109.47368 * 329.99667 * 22 20 18 26 26 C 1.47084 * 118.23662 * 308.81607 * 17 16 15 27 27 C 1.46893 * 111.00416 * 173.64966 * 14 12 11 28 28 C 1.47424 * 125.64529 * 180.02562 * 9 7 6 29 29 O 1.33927 * 125.61528 * 180.29911 * 2 1 3 30 30 H 1.09003 * 109.46831 * 179.71886 * 1 2 3 31 31 H 1.09001 * 109.47190 * 59.72348 * 1 2 3 32 32 H 1.09000 * 109.47352 * 299.72041 * 1 2 3 33 33 H 1.08008 * 126.44069 * 359.97438 * 3 2 1 34 34 H 1.08999 * 109.47329 * 270.29712 * 5 4 3 35 35 H 1.09000 * 109.47001 * 30.29731 * 5 4 3 36 36 H 1.09001 * 109.47042 * 150.29620 * 5 4 3 37 37 H 1.09004 * 109.88250 * 300.51049 * 10 9 7 38 38 H 1.08995 * 109.88646 * 61.67588 * 10 9 7 39 39 H 1.08997 * 110.92028 * 264.10927 * 11 10 9 40 40 H 1.09002 * 110.74095 * 140.85623 * 11 10 9 41 41 H 1.09009 * 109.48923 * 292.70112 * 15 14 12 42 42 H 1.09003 * 109.49742 * 52.77457 * 15 14 12 43 43 H 1.09000 * 109.62885 * 294.11928 * 16 15 14 44 44 H 1.08999 * 109.79064 * 173.62809 * 16 15 14 45 45 H 0.96998 * 119.99819 * 180.02562 * 21 20 18 46 46 H 1.08998 * 109.62397 * 291.47398 * 26 17 16 47 47 H 1.09003 * 109.79030 * 170.99270 * 26 17 16 48 48 H 1.08999 * 109.49647 * 307.21364 * 27 14 12 49 49 H 1.09007 * 109.49041 * 67.29662 * 27 14 12 50 50 H 1.09006 * 110.36551 * 274.66683 * 28 9 7 51 51 H 1.08992 * 110.37265 * 36.88357 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6250 0.6532 0.0035 5 6 4.8617 1.5143 0.0081 6 6 3.5823 -0.7116 -0.0037 7 6 4.7414 -1.6101 -0.0079 8 8 5.8680 -1.1499 -0.0055 9 7 4.5590 -2.9454 -0.0155 10 6 3.2593 -3.6326 -0.0139 11 6 3.5430 -5.1495 0.0002 12 6 4.9780 -5.2271 0.5849 13 1 4.9602 -5.1754 1.6736 14 7 5.6672 -6.4418 0.1295 15 6 4.9685 -7.6484 0.5921 16 6 5.6091 -8.8834 -0.0500 17 7 7.0536 -8.8571 0.2254 18 6 7.6879 -9.9483 0.7565 19 1 8.5870 -9.8191 1.3408 20 6 7.1752 -11.2207 0.5440 21 7 6.3012 -11.4258 -0.4185 22 14 7.7258 -12.6419 1.6239 23 1 6.8268 -12.7463 2.8012 24 1 7.6709 -13.9054 0.8455 25 1 9.1177 -12.4040 2.0836 26 6 7.7989 -7.6277 -0.0852 27 6 7.0722 -6.4421 0.5584 28 6 5.6297 -3.9588 -0.0200 29 8 2.2869 -1.0887 -0.0057 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5181 -0.8875 32 1 -0.3634 0.5095 0.8925 33 1 1.9612 2.1260 -0.0004 34 1 5.1599 1.7274 -1.0184 35 1 4.6512 2.4496 0.5269 36 1 5.6684 0.9889 0.5192 37 1 2.6924 -3.3514 0.8737 38 1 2.7001 -3.3703 -0.9119 39 1 3.5152 -5.5600 -1.0092 40 1 2.8348 -5.6687 0.6458 41 1 5.0468 -7.7205 1.6770 42 1 3.9182 -7.5929 0.3058 43 1 5.4413 -8.8648 -1.1269 44 1 5.1721 -9.7879 0.3731 45 1 5.9426 -12.3148 -0.5667 46 1 7.8416 -7.4885 -1.1654 47 1 8.8104 -7.6983 0.3150 48 1 7.5476 -5.5119 0.2475 49 1 7.1211 -6.5311 1.6437 50 1 5.9634 -4.1536 -1.0392 51 1 6.4663 -3.6295 0.5960 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052007131.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:10 Heat of formation + Delta-G solvation = -1.842208 kcal Electronic energy + Delta-G solvation = -31023.509470 eV Core-core repulsion = 26924.582806 eV Total energy + Delta-G solvation = -4098.926664 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.76487 -41.18346 -39.81057 -38.22959 -35.91890 -35.09609 -33.58211 -33.23167 -31.85154 -31.67439 -29.95439 -28.92293 -28.47966 -27.27069 -25.16712 -24.50685 -23.75536 -22.42573 -21.94695 -21.50860 -20.82214 -20.32555 -18.87350 -18.69450 -17.84453 -17.43999 -16.93947 -16.80057 -16.17946 -15.96161 -15.63816 -15.50780 -15.28583 -15.19533 -14.97966 -14.65463 -14.54937 -14.22155 -14.15782 -13.98594 -13.86366 -13.71389 -13.66050 -13.54629 -13.31094 -13.24127 -12.99292 -12.70739 -12.61081 -12.56246 -12.52952 -12.17959 -12.02630 -11.92526 -11.83803 -11.47079 -11.40764 -11.26311 -10.65995 -10.58567 -9.94337 -9.39196 -9.34186 -8.68776 -7.87780 -5.32256 -0.04472 1.30653 1.46568 1.47039 1.47778 1.56833 1.93174 2.00038 2.50589 2.91627 3.24664 3.27270 3.58388 3.59751 3.68524 3.76943 3.80008 4.01739 4.15806 4.23120 4.31738 4.35527 4.45465 4.47186 4.50515 4.56216 4.57561 4.61291 4.66931 4.68715 4.73269 4.74059 4.75762 4.83679 4.87176 4.94733 4.97511 5.00524 5.10272 5.14958 5.18541 5.19687 5.25016 5.37209 5.50726 5.61376 5.70425 5.89496 6.11200 6.19939 6.28188 6.37610 6.83404 7.13674 7.83771 8.37768 9.18936 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.002060 C = 0.001945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.164676 B =13587.897919 C =14388.911793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.029 3.971 3 C -0.233 4.233 4 C -0.088 4.088 5 C -0.094 4.094 6 C -0.117 4.117 7 C 0.611 3.389 8 O -0.556 6.556 9 N -0.611 5.611 10 C 0.112 3.888 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.054 0.946 14 N -0.526 5.526 15 C 0.055 3.945 16 C 0.185 3.815 17 N -0.615 5.615 18 C -0.263 4.263 19 H 0.066 0.934 20 C -0.051 4.051 21 N -0.934 5.934 22 Si 0.968 3.032 23 H -0.284 1.284 24 H -0.294 1.294 25 H -0.271 1.271 26 C 0.145 3.855 27 C 0.053 3.947 28 C 0.122 3.878 29 O -0.165 6.165 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.182 0.818 34 H 0.077 0.923 35 H 0.091 0.909 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.101 0.899 41 H 0.020 0.980 42 H 0.091 0.909 43 H 0.000 1.000 44 H 0.059 0.941 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.059 0.941 48 H 0.088 0.912 49 H 0.025 0.975 50 H 0.076 0.924 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.306 26.366 1.828 30.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.024 4.024 3 C -0.252 4.252 4 C -0.091 4.091 5 C -0.150 4.150 6 C -0.169 4.169 7 C 0.402 3.598 8 O -0.437 6.437 9 N -0.343 5.343 10 C -0.010 4.010 11 C -0.153 4.153 12 C -0.036 4.036 13 H 0.072 0.928 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.059 3.941 17 N -0.339 5.339 18 C -0.393 4.393 19 H 0.083 0.917 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.796 3.204 23 H -0.211 1.211 24 H -0.221 1.221 25 H -0.196 1.196 26 C 0.020 3.980 27 C -0.076 4.076 28 C 0.000 4.000 29 O -0.061 6.061 30 H 0.104 0.896 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.199 0.801 34 H 0.095 0.905 35 H 0.109 0.891 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.100 0.900 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.109 0.891 43 H 0.018 0.982 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.043 0.957 50 H 0.094 0.906 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -14.841 26.190 1.269 30.130 hybrid contribution 0.706 -1.113 1.094 1.713 sum -14.135 25.077 2.363 28.883 Atomic orbital electron populations 1.20671 0.81361 1.05569 1.05820 1.23702 0.95929 0.83556 0.99182 1.21770 0.90570 1.01360 1.11458 1.20980 0.97877 0.91912 0.98323 1.20430 0.92957 0.98511 1.03120 1.21408 0.82156 0.93999 1.19288 1.16402 0.86419 0.80279 0.76727 1.90821 1.23614 1.75770 1.53490 1.48343 1.09905 1.04340 1.71722 1.22166 0.83987 0.91662 1.03213 1.22705 0.94963 0.94183 1.03433 1.22714 0.94939 0.88913 0.97080 0.92830 1.61921 1.02130 1.01185 1.59877 1.22580 0.98227 0.90082 0.96541 1.20652 0.83241 0.94679 0.95552 1.44422 1.04305 1.11342 1.73827 1.19514 1.09668 0.85578 1.24574 0.91677 1.25780 1.00637 0.99640 0.98578 1.70181 1.35088 1.21554 1.31178 0.85254 0.78279 0.78627 0.78193 1.21098 1.22098 1.19560 1.21090 0.94520 0.85845 0.96590 1.22482 0.88895 0.99150 0.97067 1.22133 0.89964 0.86143 1.01791 1.84080 1.15306 1.35452 1.71299 0.89594 0.87227 0.87220 0.80058 0.90470 0.89059 0.91743 0.90025 0.89992 0.89413 0.88097 0.96202 0.89130 0.98161 0.92289 0.94016 0.96539 0.92302 0.89419 0.95720 0.90591 0.91079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 71.24 0.74 0.38 16 2 C 0.03 0.40 7.31 24.97 0.18 0.59 16 3 C -0.23 -3.44 10.72 22.07 0.24 -3.21 16 4 C -0.09 -1.85 6.20 -19.74 -0.12 -1.97 16 5 C -0.09 -1.78 9.82 71.24 0.70 -1.08 16 6 C -0.12 -2.86 6.95 24.07 0.17 -2.69 16 7 C 0.61 17.53 7.82 86.44 0.68 18.21 16 8 O -0.56 -18.87 14.99 -4.34 -0.07 -18.93 16 9 N -0.61 -15.67 3.33 -816.57 -2.72 -18.39 16 10 C 0.11 2.21 5.54 86.73 0.48 2.69 16 11 C -0.11 -2.38 5.35 31.78 0.17 -2.21 16 12 C 0.07 1.91 2.71 46.30 0.13 2.03 16 13 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 14 N -0.53 -17.37 4.53 -861.96 -3.90 -21.28 16 15 C 0.05 2.00 5.48 86.38 0.47 2.48 16 16 C 0.18 8.93 5.42 86.35 0.47 9.40 16 17 N -0.61 -31.55 3.04 -698.14 -2.12 -33.67 16 18 C -0.26 -14.68 9.63 84.03 0.81 -13.87 16 19 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 20 C -0.05 -2.86 4.93 84.86 0.42 -2.45 16 21 N -0.93 -55.33 11.15 21.65 0.24 -55.08 16 22 Si 0.97 45.09 29.59 68.60 2.03 47.12 16 23 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 24 H -0.29 -13.76 7.11 99.48 0.71 -13.06 16 25 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 26 C 0.15 6.22 6.69 86.35 0.58 6.80 16 27 C 0.05 1.86 5.48 86.38 0.47 2.33 16 28 C 0.12 3.28 5.32 86.85 0.46 3.74 16 29 O -0.16 -3.26 8.28 -5.01 -0.04 -3.30 16 30 H 0.09 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.11 0.14 8.14 -2.39 -0.02 0.12 16 33 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 34 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.54 6.44 -2.39 -0.02 1.52 16 37 H 0.08 1.45 7.69 -2.38 -0.02 1.43 16 38 H 0.08 1.49 7.78 -2.39 -0.02 1.48 16 39 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.10 1.75 7.93 -2.39 -0.02 1.73 16 41 H 0.02 0.76 8.14 -2.38 -0.02 0.74 16 42 H 0.09 2.82 6.87 -2.39 -0.02 2.80 16 43 H 0.00 0.01 8.14 -2.39 -0.02 0.00 16 44 H 0.06 3.20 6.11 -2.39 -0.01 3.18 16 45 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 48 H 0.09 2.64 6.79 -2.39 -0.02 2.63 16 49 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 50 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 51 H 0.07 2.01 7.74 -2.39 -0.02 1.99 16 Total: -1.00 -71.69 399.28 1.38 -70.31 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: 0.91 Total: 12.05 kcal Atomic # 6 Polarization: 14.14 SS G_CDS: 7.04 Total: 21.18 kcal Atomic # 7 Polarization: -119.92 SS G_CDS: -8.50 Total: -128.42 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -0.11 Total: -22.23 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.12 kcal Total: -71.69 1.38 -70.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052007131.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.467 kcal (2) G-P(sol) polarization free energy of solvation -71.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds