Wall clock time and date at job start Wed Apr 1 2020 04:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40369 * 126.43935 * 2 1 4 4 C 1.36549 * 106.70761 * 179.97438 * 3 2 1 5 5 C 1.46657 * 125.98933 * 180.02562 * 4 3 2 6 6 O 1.21693 * 120.00130 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.47024 * 125.65089 * 359.68868 * 7 5 4 9 9 C 1.54339 * 107.26618 * 178.85144 * 8 7 5 10 10 C 1.55154 * 103.02067 * 338.14216 * 9 8 7 11 11 H 1.09007 * 111.03993 * 277.22082 * 10 9 8 12 12 N 1.46897 * 111.00456 * 153.38260 * 10 9 8 13 13 C 1.46901 * 111.00349 * 186.40245 * 12 10 9 14 14 C 1.53232 * 109.34197 * 172.74555 * 13 12 10 15 15 N 1.47073 * 108.52151 * 53.83250 * 14 13 12 16 16 C 1.36935 * 120.88626 * 128.83939 * 15 14 13 17 17 H 1.07995 * 120.00378 * 209.18730 * 16 15 14 18 18 C 1.38816 * 119.99731 * 29.17403 * 16 15 14 19 19 N 1.31617 * 119.99971 * 13.34403 * 18 16 15 20 20 Si 1.86802 * 120.00118 * 193.33290 * 18 16 15 21 21 H 1.48502 * 109.46921 * 60.00358 * 20 18 16 22 22 H 1.48498 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47379 * 300.00728 * 20 18 16 24 24 C 1.47081 * 118.23642 * 308.80996 * 15 14 13 25 25 C 1.46900 * 110.99918 * 62.09891 * 12 10 9 26 26 C 1.47431 * 125.64737 * 180.02562 * 7 5 4 27 27 O 1.34922 * 108.02202 * 359.97438 * 4 3 2 28 28 C 1.33926 * 109.38320 * 0.02562 * 27 4 3 29 29 C 1.50705 * 125.61325 * 179.97438 * 28 27 4 30 30 H 1.08997 * 109.47328 * 270.02794 * 1 2 3 31 31 H 1.08999 * 109.46731 * 30.02445 * 1 2 3 32 32 H 1.08997 * 109.47003 * 150.02459 * 1 2 3 33 33 H 1.07991 * 126.64917 * 359.95869 * 3 2 1 34 34 H 1.08996 * 109.88604 * 298.39791 * 8 7 5 35 35 H 1.09002 * 109.87865 * 59.56535 * 8 7 5 36 36 H 1.09006 * 110.84665 * 219.67550 * 9 8 7 37 37 H 1.09001 * 110.51734 * 96.45640 * 9 8 7 38 38 H 1.09005 * 109.49224 * 292.71159 * 13 12 10 39 39 H 1.09007 * 109.49341 * 52.78379 * 13 12 10 40 40 H 1.09007 * 109.62794 * 294.11870 * 14 13 12 41 41 H 1.09002 * 109.78700 * 173.63584 * 14 13 12 42 42 H 0.97001 * 120.00190 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.62991 * 291.48009 * 24 15 14 44 44 H 1.08997 * 109.78973 * 170.98864 * 24 15 14 45 45 H 1.08989 * 109.49520 * 307.21441 * 25 12 10 46 46 H 1.08996 * 109.49462 * 67.30064 * 25 12 10 47 47 H 1.08999 * 110.36166 * 322.92919 * 26 7 5 48 48 H 1.08996 * 110.36649 * 85.14492 * 26 7 5 49 49 H 1.08997 * 109.47084 * 0.02562 * 29 28 27 50 50 H 1.09004 * 109.47170 * 120.02267 * 29 28 27 51 51 H 1.09004 * 109.46809 * 240.02026 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1293 0.0000 4 6 3.6261 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7471 2.7078 0.0010 7 7 6.0521 0.9093 0.0024 8 6 6.3056 -0.5389 0.0094 9 6 7.8360 -0.7362 -0.0216 10 6 8.3497 0.6057 -0.6070 11 1 8.2909 0.6058 -1.6955 12 7 9.7193 0.8867 -0.1564 13 6 10.1504 2.2242 -0.5845 14 6 11.5047 2.5495 0.0543 15 7 12.4437 1.4627 -0.2620 16 6 13.6751 1.7312 -0.7974 17 1 14.1530 1.0084 -1.4420 18 6 14.3090 2.9327 -0.5119 19 7 13.8654 3.6949 0.4651 20 14 15.7919 3.4676 -1.5141 21 1 15.4039 3.5971 -2.9416 22 1 16.2818 4.7768 -1.0130 23 1 16.8692 2.4537 -1.3840 24 6 12.0252 0.0796 0.0126 25 6 10.6504 -0.1486 -0.6247 26 6 7.3461 1.6157 0.0038 27 8 3.5858 -0.6804 0.0015 28 6 2.3098 -1.0870 0.0010 29 6 1.8456 -2.5207 0.0011 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 2.0266 2.1625 -0.0006 34 1 5.8907 -0.9835 0.9140 35 1 5.8566 -0.9980 -0.8714 36 1 8.1066 -1.5690 -0.6708 37 1 8.2218 -0.8902 0.9861 38 1 10.2458 2.2454 -1.6702 39 1 9.4128 2.9623 -0.2694 40 1 11.3895 2.6310 1.1352 41 1 11.8848 3.4897 -0.3453 42 1 14.3085 4.5343 0.6649 43 1 11.9601 -0.0763 1.0894 44 1 12.7470 -0.6161 -0.4152 45 1 10.2755 -1.1312 -0.3387 46 1 10.7390 -0.0943 -1.7097 47 1 7.2889 2.5132 -0.6121 48 1 7.6367 1.8732 1.0222 49 1 2.7113 -3.1829 0.0022 50 1 1.2440 -2.7078 0.8906 51 1 1.2456 -2.7084 -0.8894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052012995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:41 Heat of formation + Delta-G solvation = 16.853510 kcal Electronic energy + Delta-G solvation = -30827.204112 eV Core-core repulsion = 26729.088155 eV Total energy + Delta-G solvation = -4098.115957 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.04160 -40.10589 -38.46340 -36.84099 -34.83657 -34.13629 -32.39965 -31.61531 -30.77155 -29.75912 -29.16089 -28.74248 -26.85891 -25.67177 -23.93359 -22.91706 -22.51788 -21.75301 -20.95834 -20.40300 -19.40015 -19.15033 -17.59101 -17.16242 -16.82518 -16.29593 -16.05852 -15.48448 -14.95228 -14.63372 -14.40677 -14.10350 -14.04098 -13.92224 -13.63664 -13.47656 -13.45243 -13.39533 -13.30310 -13.15194 -13.05770 -12.81142 -12.69398 -12.63016 -12.34101 -11.91835 -11.72571 -11.44348 -11.19963 -11.00779 -10.90290 -10.73149 -10.45920 -10.43950 -10.27905 -10.03450 -10.01137 -9.74551 -9.59766 -8.93179 -8.61623 -8.50280 -7.90883 -6.62411 -5.77005 -3.21980 0.78935 1.95395 2.28633 2.80463 2.98616 3.38701 3.44462 3.45205 4.09372 4.21176 4.37880 4.44062 4.50304 4.58722 4.59963 4.79964 4.94211 4.97174 4.99985 5.16752 5.22446 5.25246 5.29225 5.35764 5.41374 5.46133 5.46884 5.48454 5.60021 5.68391 5.70565 5.80712 5.83832 5.90841 5.92424 6.00158 6.12289 6.12981 6.16240 6.26295 6.33372 6.52373 6.62382 6.69270 6.92339 7.21606 7.25847 7.55011 7.63853 7.70725 7.81282 7.84628 8.46194 9.22661 9.84838 10.44399 11.31607 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.001972 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.765377 B =14195.865336 C =14885.270022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.194 4.194 3 C -0.116 4.116 4 C -0.070 4.070 5 C 0.615 3.385 6 O -0.521 6.521 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.123 4.123 10 C 0.069 3.931 11 H 0.052 0.948 12 N -0.520 5.520 13 C 0.032 3.968 14 C 0.179 3.821 15 N -0.595 5.595 16 C -0.254 4.254 17 H 0.064 0.936 18 C 0.003 3.997 19 N -0.904 5.904 20 Si 0.904 3.096 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.283 1.283 24 C 0.149 3.851 25 C 0.045 3.955 26 C 0.117 3.883 27 O -0.156 6.156 28 C 0.012 3.988 29 C -0.076 4.076 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.027 0.973 41 H 0.089 0.911 42 H 0.255 0.745 43 H 0.025 0.975 44 H 0.055 0.945 45 H 0.063 0.937 46 H 0.028 0.972 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.079 0.921 50 H 0.088 0.912 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.243 -13.236 -1.016 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.195 4.195 3 C -0.136 4.136 4 C -0.122 4.122 5 C 0.404 3.596 6 O -0.399 6.399 7 N -0.341 5.341 8 C -0.017 4.017 9 C -0.161 4.161 10 C -0.041 4.041 11 H 0.069 0.931 12 N -0.246 5.246 13 C -0.097 4.097 14 C 0.053 3.947 15 N -0.318 5.318 16 C -0.383 4.383 17 H 0.082 0.918 18 C -0.196 4.196 19 N -0.548 5.548 20 Si 0.734 3.266 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.022 3.978 25 C -0.084 4.084 26 C -0.005 4.005 27 O -0.053 6.053 28 C -0.040 4.040 29 C -0.133 4.133 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.100 0.900 37 H 0.109 0.891 38 H 0.045 0.955 39 H 0.081 0.919 40 H 0.045 0.955 41 H 0.107 0.893 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.074 0.926 45 H 0.082 0.918 46 H 0.046 0.954 47 H 0.098 0.902 48 H 0.104 0.896 49 H 0.098 0.902 50 H 0.107 0.893 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.967 -12.575 -0.448 28.855 hybrid contribution 0.661 0.440 -1.377 1.590 sum -25.306 -12.135 -1.825 28.124 Atomic orbital electron populations 1.20174 0.88610 1.02768 1.02246 1.20201 0.97505 0.91754 1.10024 1.21809 0.90445 1.00504 1.00874 1.21893 0.95892 0.80252 1.14184 1.16132 0.80156 0.85965 0.77396 1.90900 1.85409 1.12046 1.51539 1.48291 1.05449 1.08440 1.71903 1.22115 0.96983 0.80493 1.02158 1.22720 0.92493 0.97543 1.03324 1.22741 0.90200 0.94205 0.96920 0.93059 1.62020 0.99315 1.03661 1.59576 1.22972 1.00347 0.88473 0.97900 1.20853 0.84048 0.92931 0.96835 1.44073 1.14345 0.99827 1.73574 1.19123 0.94366 1.02951 1.21900 0.91848 1.25113 0.98017 0.99477 0.96960 1.69978 1.42247 1.13752 1.28840 0.86348 0.82680 0.77750 0.79811 1.21089 1.21593 1.20893 1.20971 0.91489 0.88346 0.96952 1.22636 0.94852 0.93500 0.97438 1.22315 0.80227 0.95334 1.02658 1.84104 1.28500 1.21800 1.70851 1.22619 0.80846 0.97191 1.03370 1.20388 1.02004 0.87035 1.03834 0.91296 0.91295 0.91522 0.82308 0.90916 0.91199 0.90046 0.89103 0.95546 0.91904 0.95468 0.89339 0.93512 0.95668 0.92626 0.91820 0.95398 0.90181 0.89593 0.90185 0.89295 0.89319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.17 36.01 0.37 -0.09 16 2 C -0.19 -1.71 6.14 -104.93 -0.64 -2.35 16 3 C -0.12 -1.28 10.57 -39.39 -0.42 -1.70 16 4 C -0.07 -0.88 6.95 -36.80 -0.26 -1.13 16 5 C 0.62 9.02 7.82 -12.86 -0.10 8.92 16 6 O -0.52 -9.16 17.12 5.20 0.09 -9.08 16 7 N -0.61 -8.13 3.33 -172.04 -0.57 -8.71 16 8 C 0.11 1.12 5.55 -3.06 -0.02 1.10 16 9 C -0.12 -1.34 5.34 -24.89 -0.13 -1.47 16 10 C 0.07 0.96 2.72 -65.56 -0.18 0.78 16 11 H 0.05 0.74 8.14 -51.92 -0.42 0.31 16 12 N -0.52 -8.84 4.53 -223.77 -1.01 -9.85 16 13 C 0.03 0.62 5.48 -3.70 -0.02 0.60 16 14 C 0.18 4.32 5.38 -3.61 -0.02 4.30 16 15 N -0.59 -14.97 3.03 -172.02 -0.52 -15.49 16 16 C -0.25 -6.97 9.63 -15.06 -0.14 -7.11 16 17 H 0.06 1.70 7.86 -52.49 -0.41 1.29 16 18 C 0.00 0.08 5.01 -17.43 -0.09 0.00 16 19 N -0.90 -26.32 11.11 55.49 0.62 -25.70 16 20 Si 0.90 21.76 29.57 -169.99 -5.03 16.73 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.15 3.10 6.69 -3.60 -0.02 3.08 16 25 C 0.05 0.77 5.48 -3.70 -0.02 0.75 16 26 C 0.12 1.67 5.31 -2.51 -0.01 1.65 16 27 O -0.16 -1.67 8.28 4.99 0.04 -1.63 16 28 C 0.01 0.10 7.31 -35.41 -0.26 -0.16 16 29 C -0.08 -0.33 9.92 36.01 0.36 0.03 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.27 7.88 -51.93 -0.41 -0.14 16 33 H 0.16 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.07 0.72 7.80 -51.93 -0.41 0.31 16 35 H 0.07 0.68 7.67 -51.93 -0.40 0.29 16 36 H 0.08 0.77 7.94 -51.93 -0.41 0.35 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 38 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 1.12 6.79 -51.93 -0.35 0.77 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.09 2.37 6.19 -51.93 -0.32 2.05 16 42 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 43 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.06 1.11 7.96 -51.93 -0.41 0.70 16 45 H 0.06 0.90 6.87 -51.93 -0.36 0.55 16 46 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 1.21 7.74 -51.93 -0.40 0.81 16 48 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 49 H 0.08 0.30 8.14 -51.93 -0.42 -0.12 16 50 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 51 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 LS Contribution 402.53 15.07 6.07 6.07 Total: -1.00 -32.48 402.53 -10.45 -42.93 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.51 Total: -2.46 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -1.61 Total: 7.19 kcal Atomic # 7 Polarization: -58.26 SS G_CDS: -1.49 Total: -59.75 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.13 Total: -10.71 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.03 Total: 16.73 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.48 -10.45 -42.93 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052012995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.784 kcal (2) G-P(sol) polarization free energy of solvation -32.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds