Wall clock time and date at job start Wed Apr 1 2020 04:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40369 * 126.43935 * 2 1 4 4 C 1.36549 * 106.70761 * 179.97438 * 3 2 1 5 5 C 1.46657 * 125.98933 * 180.02562 * 4 3 2 6 6 O 1.21693 * 120.00130 * 359.97438 * 5 4 3 7 7 N 1.34772 * 119.99803 * 179.97438 * 5 4 3 8 8 C 1.47024 * 125.65089 * 359.68868 * 7 5 4 9 9 C 1.54339 * 107.26618 * 178.85144 * 8 7 5 10 10 C 1.55154 * 103.02067 * 338.14216 * 9 8 7 11 11 H 1.09007 * 111.03993 * 277.22082 * 10 9 8 12 12 N 1.46897 * 111.00456 * 153.38260 * 10 9 8 13 13 C 1.46901 * 111.00349 * 186.40245 * 12 10 9 14 14 C 1.53232 * 109.34197 * 172.74555 * 13 12 10 15 15 N 1.47073 * 108.52151 * 53.83250 * 14 13 12 16 16 C 1.36935 * 120.88626 * 128.83939 * 15 14 13 17 17 H 1.07995 * 120.00378 * 209.18730 * 16 15 14 18 18 C 1.38816 * 119.99731 * 29.17403 * 16 15 14 19 19 N 1.31617 * 119.99971 * 13.34403 * 18 16 15 20 20 Si 1.86802 * 120.00118 * 193.33290 * 18 16 15 21 21 H 1.48502 * 109.46921 * 60.00358 * 20 18 16 22 22 H 1.48498 * 109.47184 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47379 * 300.00728 * 20 18 16 24 24 C 1.47081 * 118.23642 * 308.80996 * 15 14 13 25 25 C 1.46900 * 110.99918 * 62.09891 * 12 10 9 26 26 C 1.47431 * 125.64737 * 180.02562 * 7 5 4 27 27 O 1.34922 * 108.02202 * 359.97438 * 4 3 2 28 28 C 1.33926 * 109.38320 * 0.02562 * 27 4 3 29 29 C 1.50705 * 125.61325 * 179.97438 * 28 27 4 30 30 H 1.08997 * 109.47328 * 270.02794 * 1 2 3 31 31 H 1.08999 * 109.46731 * 30.02445 * 1 2 3 32 32 H 1.08997 * 109.47003 * 150.02459 * 1 2 3 33 33 H 1.07991 * 126.64917 * 359.95869 * 3 2 1 34 34 H 1.08996 * 109.88604 * 298.39791 * 8 7 5 35 35 H 1.09002 * 109.87865 * 59.56535 * 8 7 5 36 36 H 1.09006 * 110.84665 * 219.67550 * 9 8 7 37 37 H 1.09001 * 110.51734 * 96.45640 * 9 8 7 38 38 H 1.09005 * 109.49224 * 292.71159 * 13 12 10 39 39 H 1.09007 * 109.49341 * 52.78379 * 13 12 10 40 40 H 1.09007 * 109.62794 * 294.11870 * 14 13 12 41 41 H 1.09002 * 109.78700 * 173.63584 * 14 13 12 42 42 H 0.97001 * 120.00190 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.62991 * 291.48009 * 24 15 14 44 44 H 1.08997 * 109.78973 * 170.98864 * 24 15 14 45 45 H 1.08989 * 109.49520 * 307.21441 * 25 12 10 46 46 H 1.08996 * 109.49462 * 67.30064 * 25 12 10 47 47 H 1.08999 * 110.36166 * 322.92919 * 26 7 5 48 48 H 1.08996 * 110.36649 * 85.14492 * 26 7 5 49 49 H 1.08997 * 109.47084 * 0.02562 * 29 28 27 50 50 H 1.09004 * 109.47170 * 120.02267 * 29 28 27 51 51 H 1.09004 * 109.46809 * 240.02026 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1293 0.0000 4 6 3.6261 0.6682 0.0006 5 6 4.8379 1.4942 0.0013 6 8 4.7471 2.7078 0.0010 7 7 6.0521 0.9093 0.0024 8 6 6.3056 -0.5389 0.0094 9 6 7.8360 -0.7362 -0.0216 10 6 8.3497 0.6057 -0.6070 11 1 8.2909 0.6058 -1.6955 12 7 9.7193 0.8867 -0.1564 13 6 10.1504 2.2242 -0.5845 14 6 11.5047 2.5495 0.0543 15 7 12.4437 1.4627 -0.2620 16 6 13.6751 1.7312 -0.7974 17 1 14.1530 1.0084 -1.4420 18 6 14.3090 2.9327 -0.5119 19 7 13.8654 3.6949 0.4651 20 14 15.7919 3.4676 -1.5141 21 1 15.4039 3.5971 -2.9416 22 1 16.2818 4.7768 -1.0130 23 1 16.8692 2.4537 -1.3840 24 6 12.0252 0.0796 0.0126 25 6 10.6504 -0.1486 -0.6247 26 6 7.3461 1.6157 0.0038 27 8 3.5858 -0.6804 0.0015 28 6 2.3098 -1.0870 0.0010 29 6 1.8456 -2.5207 0.0011 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5134 33 1 2.0266 2.1625 -0.0006 34 1 5.8907 -0.9835 0.9140 35 1 5.8566 -0.9980 -0.8714 36 1 8.1066 -1.5690 -0.6708 37 1 8.2218 -0.8902 0.9861 38 1 10.2458 2.2454 -1.6702 39 1 9.4128 2.9623 -0.2694 40 1 11.3895 2.6310 1.1352 41 1 11.8848 3.4897 -0.3453 42 1 14.3085 4.5343 0.6649 43 1 11.9601 -0.0763 1.0894 44 1 12.7470 -0.6161 -0.4152 45 1 10.2755 -1.1312 -0.3387 46 1 10.7390 -0.0943 -1.7097 47 1 7.2889 2.5132 -0.6121 48 1 7.6367 1.8732 1.0222 49 1 2.7113 -3.1829 0.0022 50 1 1.2440 -2.7078 0.8906 51 1 1.2456 -2.7084 -0.8894 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052012995.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:40 Heat of formation + Delta-G solvation = -3.706926 kcal Electronic energy + Delta-G solvation = -30828.095680 eV Core-core repulsion = 26729.088155 eV Total energy + Delta-G solvation = -4099.007524 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -43.79378 -41.21649 -39.82249 -38.21907 -35.92518 -35.37560 -33.46172 -32.97873 -32.13814 -31.32489 -30.05832 -29.55109 -28.13017 -26.90799 -25.16632 -24.56636 -23.87722 -22.66997 -21.80349 -21.63987 -20.82460 -20.28263 -18.83141 -18.51532 -17.86518 -17.49475 -17.04850 -16.78727 -16.35003 -16.00222 -15.70032 -15.48831 -15.30327 -15.20006 -14.93825 -14.64779 -14.51761 -14.32506 -14.11235 -13.96274 -13.91428 -13.71481 -13.61916 -13.56777 -13.17485 -13.12034 -13.03780 -12.68271 -12.60022 -12.51998 -12.41940 -12.27338 -12.02981 -11.94350 -11.79534 -11.58378 -11.44824 -11.36610 -10.77833 -10.58903 -9.95173 -9.36646 -9.33715 -8.64773 -7.87196 -5.35539 -0.07378 1.24316 1.41372 1.46064 1.48366 1.55186 1.89353 1.97527 2.50215 2.91761 3.21790 3.28990 3.56407 3.59430 3.69460 3.77832 3.85046 4.01657 4.15630 4.23581 4.28195 4.32971 4.36281 4.44875 4.50266 4.55905 4.61053 4.67666 4.69764 4.72565 4.74041 4.74914 4.82001 4.88878 4.89130 4.92780 5.02518 5.05221 5.06624 5.08758 5.15573 5.18854 5.22625 5.37997 5.56330 5.61268 5.68540 5.86386 6.10915 6.19003 6.25773 6.38808 6.77080 7.13798 7.84012 8.38970 9.19230 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029915 B = 0.001972 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.765377 B =14195.865336 C =14885.270022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.206 4.206 3 C -0.119 4.119 4 C -0.102 4.102 5 C 0.610 3.390 6 O -0.566 6.566 7 N -0.609 5.609 8 C 0.109 3.891 9 C -0.111 4.111 10 C 0.074 3.926 11 H 0.055 0.945 12 N -0.526 5.526 13 C 0.050 3.950 14 C 0.188 3.812 15 N -0.614 5.614 16 C -0.264 4.264 17 H 0.068 0.932 18 C -0.052 4.052 19 N -0.937 5.937 20 Si 0.970 3.030 21 H -0.279 1.279 22 H -0.295 1.295 23 H -0.273 1.273 24 C 0.143 3.857 25 C 0.057 3.943 26 C 0.119 3.881 27 O -0.160 6.160 28 C 0.023 3.977 29 C -0.077 4.077 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.020 0.980 39 H 0.073 0.927 40 H -0.001 1.001 41 H 0.054 0.946 42 H 0.250 0.750 43 H 0.018 0.982 44 H 0.063 0.937 45 H 0.105 0.895 46 H 0.024 0.976 47 H 0.063 0.937 48 H 0.074 0.926 49 H 0.088 0.912 50 H 0.108 0.892 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.281 -16.806 -1.934 32.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.207 4.207 3 C -0.140 4.140 4 C -0.153 4.153 5 C 0.401 3.599 6 O -0.448 6.448 7 N -0.340 5.340 8 C -0.013 4.013 9 C -0.149 4.149 10 C -0.036 4.036 11 H 0.072 0.928 12 N -0.251 5.251 13 C -0.080 4.080 14 C 0.062 3.938 15 N -0.338 5.338 16 C -0.394 4.394 17 H 0.086 0.914 18 C -0.248 4.248 19 N -0.583 5.583 20 Si 0.798 3.202 21 H -0.205 1.205 22 H -0.221 1.221 23 H -0.199 1.199 24 C 0.018 3.982 25 C -0.071 4.071 26 C -0.004 4.004 27 O -0.056 6.056 28 C -0.030 4.030 29 C -0.133 4.133 30 H 0.096 0.904 31 H 0.087 0.913 32 H 0.107 0.893 33 H 0.173 0.827 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.127 0.873 37 H 0.109 0.891 38 H 0.038 0.962 39 H 0.091 0.909 40 H 0.017 0.983 41 H 0.072 0.928 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.081 0.919 45 H 0.123 0.877 46 H 0.043 0.957 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.107 0.893 50 H 0.127 0.873 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -28.017 -16.214 -1.372 32.399 hybrid contribution 1.188 1.450 -1.046 2.147 sum -26.829 -14.763 -2.419 30.718 Atomic orbital electron populations 1.20266 0.86304 1.03897 1.03158 1.20573 0.99092 0.90868 1.10166 1.22055 0.90749 1.01313 0.99858 1.21453 0.95155 0.81153 1.17564 1.16450 0.81018 0.85796 0.76666 1.90857 1.86201 1.13956 1.53784 1.48354 1.04705 1.09662 1.71298 1.22260 0.96906 0.78705 1.03459 1.22727 0.92227 0.96291 1.03653 1.22715 0.87816 0.95941 0.97102 0.92757 1.61922 1.00941 1.02351 1.59898 1.22589 0.97913 0.90647 0.96809 1.20561 0.86313 0.91793 0.95125 1.44357 1.14068 1.01688 1.73727 1.19489 0.95126 1.03079 1.21676 0.91402 1.25901 1.00998 0.99756 0.98119 1.70156 1.43661 1.13919 1.30564 0.85306 0.79555 0.77016 0.78330 1.20481 1.22132 1.19891 1.21156 0.94011 0.86139 0.96911 1.22496 0.92730 0.95173 0.96745 1.22163 0.81268 0.95341 1.01651 1.84077 1.29838 1.20634 1.71074 1.23537 0.79863 0.99048 1.00503 1.20664 1.02828 0.84081 1.05693 0.90418 0.91308 0.89315 0.82681 0.89724 0.89752 0.87282 0.89088 0.96203 0.90874 0.98332 0.92770 0.94117 0.96441 0.91878 0.87716 0.95744 0.91803 0.90824 0.89324 0.87337 0.87251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 10.17 71.24 0.72 0.04 16 2 C -0.21 -3.22 6.14 -20.06 -0.12 -3.35 16 3 C -0.12 -2.61 10.57 22.39 0.24 -2.38 16 4 C -0.10 -2.52 6.95 24.07 0.17 -2.35 16 5 C 0.61 18.34 7.82 86.44 0.68 19.02 16 6 O -0.57 -21.06 17.12 -4.32 -0.07 -21.14 16 7 N -0.61 -16.06 3.33 -816.44 -2.72 -18.77 16 8 C 0.11 2.03 5.55 86.73 0.48 2.51 16 9 C -0.11 -2.06 5.34 31.79 0.17 -1.89 16 10 C 0.07 1.92 2.72 46.31 0.13 2.04 16 11 H 0.05 1.44 8.14 -2.38 -0.02 1.42 16 12 N -0.53 -17.35 4.53 -861.87 -3.90 -21.25 16 13 C 0.05 1.97 5.48 86.38 0.47 2.44 16 14 C 0.19 9.45 5.38 86.35 0.46 9.92 16 15 N -0.61 -31.47 3.03 -698.14 -2.11 -33.58 16 16 C -0.26 -14.66 9.63 84.03 0.81 -13.85 16 17 H 0.07 3.64 7.86 -2.91 -0.02 3.61 16 18 C -0.05 -2.98 5.01 84.86 0.42 -2.55 16 19 N -0.94 -56.64 11.11 21.65 0.24 -56.40 16 20 Si 0.97 45.48 29.57 68.60 2.03 47.51 16 21 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 22 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 C 0.14 5.87 6.69 86.35 0.58 6.45 16 25 C 0.06 1.83 5.48 86.39 0.47 2.30 16 26 C 0.12 3.41 5.31 86.86 0.46 3.87 16 27 O -0.16 -3.11 8.28 -5.07 -0.04 -3.15 16 28 C 0.02 0.32 7.31 24.97 0.18 0.51 16 29 C -0.08 -0.34 9.92 71.24 0.71 0.37 16 30 H 0.08 0.54 8.14 -2.39 -0.02 0.53 16 31 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.09 0.37 7.88 -2.39 -0.02 0.35 16 33 H 0.16 3.36 8.06 -2.92 -0.02 3.34 16 34 H 0.08 1.43 7.80 -2.39 -0.02 1.41 16 35 H 0.08 1.38 7.67 -2.39 -0.02 1.36 16 36 H 0.11 1.50 7.94 -2.38 -0.02 1.48 16 37 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.07 2.71 6.79 -2.38 -0.02 2.69 16 40 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 41 H 0.05 3.07 6.19 -2.39 -0.01 3.05 16 42 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 43 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 44 H 0.06 2.45 7.96 -2.39 -0.02 2.43 16 45 H 0.10 2.53 6.87 -2.39 -0.02 2.51 16 46 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 47 H 0.06 2.02 7.74 -2.39 -0.02 2.01 16 48 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 49 H 0.09 0.29 8.14 -2.39 -0.02 0.27 16 50 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 51 H 0.11 0.11 8.14 -2.38 -0.02 0.09 16 Total: -1.00 -74.50 402.53 1.36 -73.13 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.91 Total: 10.55 kcal Atomic # 6 Polarization: 16.07 SS G_CDS: 7.03 Total: 23.11 kcal Atomic # 7 Polarization: -121.51 SS G_CDS: -8.49 Total: -130.00 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.12 Total: -24.29 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -74.50 1.36 -73.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052012995.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.427 kcal (2) G-P(sol) polarization free energy of solvation -74.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds