Wall clock time and date at job start Wed Apr 1 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41377 * 126.57803 * 2 1 4 4 C 1.34516 * 106.84148 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41915 * 0.02562 * 4 3 2 6 6 C 1.34304 * 109.47518 * 359.77019 * 5 4 3 7 7 C 1.50699 * 125.78669 * 180.24013 * 6 5 4 8 8 C 1.50701 * 109.47138 * 270.15947 * 7 6 5 9 9 O 1.21287 * 119.99781 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00233 * 180.02562 * 8 7 6 11 11 C 1.47024 * 125.64789 * 359.69147 * 10 8 7 12 12 C 1.54316 * 107.27336 * 180.97207 * 11 10 8 13 13 C 1.55151 * 102.86569 * 22.52587 * 12 11 10 14 14 H 1.09000 * 111.00878 * 82.37916 * 13 12 11 15 15 N 1.46900 * 111.03618 * 206.21742 * 13 12 11 16 16 C 1.46905 * 110.99891 * 296.23263 * 15 13 12 17 17 C 1.53240 * 109.34071 * 172.74527 * 16 15 13 18 18 N 1.47086 * 108.51826 * 53.83573 * 17 16 15 19 19 C 1.36934 * 120.88191 * 128.79790 * 18 17 16 20 20 H 1.08001 * 119.99377 * 208.80829 * 19 18 17 21 21 C 1.38807 * 120.00111 * 28.79650 * 19 18 17 22 22 N 1.31619 * 120.00191 * 14.68330 * 21 19 18 23 23 Si 1.86806 * 120.00189 * 194.67698 * 21 19 18 24 24 H 1.48495 * 109.46718 * 60.00221 * 23 21 19 25 25 H 1.48493 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46975 * 300.00318 * 23 21 19 27 27 C 1.47075 * 118.23484 * 308.81152 * 18 17 16 28 28 C 1.46901 * 111.00302 * 171.93644 * 15 13 12 29 29 C 1.47427 * 125.64916 * 180.02562 * 10 8 7 30 30 H 1.09002 * 109.46924 * 90.02588 * 1 2 3 31 31 H 1.09003 * 109.47159 * 330.02383 * 1 2 3 32 32 H 1.09001 * 109.47217 * 210.02495 * 1 2 3 33 33 H 1.08005 * 126.58371 * 0.02562 * 3 2 1 34 34 H 1.07999 * 125.78749 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47625 * 30.15748 * 7 6 5 36 36 H 1.09001 * 109.47191 * 150.16239 * 7 6 5 37 37 H 1.09004 * 109.88100 * 300.51378 * 11 10 8 38 38 H 1.08995 * 109.88170 * 61.67952 * 11 10 8 39 39 H 1.08999 * 110.92149 * 264.10850 * 12 11 10 40 40 H 1.08998 * 110.74275 * 140.85824 * 12 11 10 41 41 H 1.08994 * 109.49668 * 292.70902 * 16 15 13 42 42 H 1.09001 * 109.49001 * 52.78817 * 16 15 13 43 43 H 1.08994 * 109.62992 * 294.12786 * 17 16 15 44 44 H 1.08992 * 109.62782 * 173.54358 * 17 16 15 45 45 H 0.96997 * 119.99996 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.63496 * 291.47787 * 27 18 17 47 47 H 1.09003 * 109.62897 * 170.90018 * 27 18 17 48 48 H 1.09004 * 109.48939 * 307.21506 * 28 15 13 49 49 H 1.09007 * 109.49236 * 67.25890 * 28 15 13 50 50 H 1.08995 * 110.36682 * 274.67286 * 29 10 8 51 51 H 1.09001 * 110.36699 * 36.99443 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3086 -1.0801 0.0047 7 6 1.8523 -2.5164 0.0111 8 6 1.7008 -3.0016 -1.4076 9 8 1.9395 -2.2545 -2.3328 10 7 1.2991 -4.2654 -1.6483 11 6 0.9830 -5.2734 -0.6258 12 6 0.5952 -6.5708 -1.3660 13 6 1.2681 -6.3919 -2.7524 14 1 2.3202 -6.6745 -2.7155 15 7 0.5568 -7.1555 -3.7863 16 6 0.6264 -8.5979 -3.5169 17 6 -0.2735 -9.3434 -4.5083 18 7 0.1057 -8.9466 -5.8729 19 6 0.3719 -9.8887 -6.8304 20 1 1.0620 -9.6653 -7.6305 21 6 -0.2452 -11.1307 -6.7725 22 7 -1.2865 -11.3123 -5.9882 23 14 0.4021 -12.5445 -7.8077 24 1 1.8115 -12.8264 -7.4345 25 1 -0.4254 -13.7538 -7.5671 26 1 0.3346 -12.1770 -9.2450 27 6 0.1918 -7.5112 -6.1816 28 6 1.0732 -6.8379 -5.1244 29 6 1.1107 -4.8680 -2.9805 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3634 -0.8898 0.5142 33 1 2.0367 2.1691 0.0004 34 1 4.5060 1.2924 0.0011 35 1 2.5901 -3.1298 0.5280 36 1 0.8938 -2.5908 0.5248 37 1 1.8557 -5.4499 0.0030 38 1 0.1465 -4.9328 -0.0157 39 1 -0.4869 -6.6510 -1.4699 40 1 0.9974 -7.4436 -0.8517 41 1 1.6549 -8.9401 -3.6310 42 1 0.2879 -8.7946 -2.4996 43 1 -1.3154 -9.0800 -4.3266 44 1 -0.1384 -10.4183 -4.3886 45 1 -1.7174 -12.1804 -5.9475 46 1 -0.8054 -7.0717 -6.1608 47 1 0.6345 -7.3748 -7.1683 48 1 1.0590 -5.7581 -5.2728 49 1 2.0959 -7.2041 -5.2159 50 1 0.1146 -4.6426 -3.3614 51 1 1.8726 -4.5071 -3.6714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052079098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:51 Heat of formation + Delta-G solvation = 19.613113 kcal Electronic energy + Delta-G solvation = -30711.503997 eV Core-core repulsion = 26613.507705 eV Total energy + Delta-G solvation = -4097.996292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.82114 -40.26230 -38.52912 -36.82380 -34.51752 -34.19998 -32.52149 -31.62146 -30.39544 -30.19219 -29.23765 -28.34884 -26.57283 -25.65690 -23.78453 -22.84754 -22.22476 -21.68921 -20.54837 -20.17361 -19.21649 -19.15263 -17.55528 -17.22618 -17.08651 -16.33098 -16.10706 -15.60189 -15.12030 -14.76621 -14.57286 -14.26017 -14.10878 -13.96455 -13.73049 -13.47902 -13.38473 -13.35654 -13.17884 -12.95825 -12.87274 -12.75888 -12.62068 -12.40211 -12.20155 -11.88284 -11.70920 -11.32824 -11.22368 -11.04305 -10.91757 -10.74440 -10.47418 -10.30738 -10.12473 -10.05496 -9.80687 -9.75541 -9.61688 -8.81933 -8.57898 -8.52037 -7.92385 -6.64659 -5.79137 -3.22793 1.46230 2.32230 2.41089 2.64497 2.94338 3.37606 3.43093 3.44236 4.17549 4.20755 4.30890 4.49031 4.54223 4.61724 4.66182 4.69152 4.79200 4.93559 4.95170 5.18195 5.21779 5.26323 5.37425 5.39218 5.41894 5.44677 5.53521 5.60119 5.69494 5.78601 5.80047 5.81998 5.86596 5.92588 5.95354 6.02817 6.13007 6.15397 6.23532 6.31634 6.33450 6.51536 6.67297 6.92324 6.92674 7.20689 7.29546 7.53739 7.60691 7.67093 7.79864 7.94943 8.44016 9.20928 9.83268 10.42765 11.29691 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.001861 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.417686 B =15041.541642 C =15270.767264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.163 4.163 3 C -0.211 4.211 4 C -0.036 4.036 5 O -0.172 6.172 6 C 0.001 3.999 7 C -0.055 4.055 8 C 0.529 3.471 9 O -0.529 6.529 10 N -0.617 5.617 11 C 0.100 3.900 12 C -0.123 4.123 13 C 0.068 3.932 14 H 0.050 0.950 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.253 4.253 20 H 0.064 0.936 21 C 0.003 3.997 22 N -0.904 5.904 23 Si 0.904 3.096 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.283 1.283 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.117 3.883 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.062 0.938 33 H 0.147 0.853 34 H 0.202 0.798 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.072 0.928 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.081 0.919 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.547 19.247 18.039 26.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.165 4.165 3 C -0.230 4.230 4 C -0.104 4.104 5 O -0.068 6.068 6 C -0.049 4.049 7 C -0.095 4.095 8 C 0.317 3.683 9 O -0.404 6.404 10 N -0.353 5.353 11 C -0.024 4.024 12 C -0.161 4.161 13 C -0.042 4.042 14 H 0.068 0.932 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.054 3.946 18 N -0.318 5.318 19 C -0.382 4.382 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.006 4.006 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.165 0.835 34 H 0.219 0.781 35 H 0.128 0.872 36 H 0.140 0.860 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.047 0.953 50 H 0.100 0.900 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 5.340 19.498 17.560 26.778 hybrid contribution 1.141 -0.828 -0.505 1.497 sum 6.481 18.670 17.055 26.104 Atomic orbital electron populations 1.20199 0.89260 1.02238 1.02380 1.20167 0.97070 0.92026 1.07212 1.21677 0.92606 0.99731 1.08989 1.23951 0.99751 0.80511 1.06150 1.83981 1.28575 1.22863 1.71336 1.21218 0.81279 0.94898 1.07535 1.20023 1.04045 0.89661 0.95732 1.19992 0.77038 0.80351 0.90937 1.90759 1.49730 1.54044 1.45901 1.48428 1.67098 1.10977 1.08763 1.22131 1.00380 0.88587 0.91260 1.22688 1.02851 0.95858 0.94712 1.22748 0.96129 0.92644 0.92646 0.93190 1.62032 1.54023 1.07408 1.01105 1.22924 0.99818 0.86224 1.00315 1.20843 0.93962 0.98217 0.81618 1.44088 1.80832 0.99598 1.07325 1.19135 1.19304 0.93535 1.06265 0.91820 1.25084 0.95752 0.99483 0.99275 1.69993 1.20151 1.23068 1.41636 0.86355 0.78211 0.81924 0.80161 1.21102 1.21604 1.20879 1.20977 0.96293 0.85926 0.94558 1.22683 0.97474 0.99100 0.89564 1.22246 1.02568 0.91763 0.83994 0.91182 0.91521 0.91876 0.83511 0.78113 0.87182 0.86042 0.91290 0.90976 0.89004 0.90018 0.95671 0.91905 0.95477 0.89496 0.93563 0.95587 0.92580 0.91850 0.95321 0.90041 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.18 36.01 0.37 -0.33 16 2 C -0.16 -1.73 6.16 -104.74 -0.65 -2.38 16 3 C -0.21 -2.01 10.87 -39.70 -0.43 -2.44 16 4 C -0.04 -0.33 12.09 29.42 0.36 0.02 16 5 O -0.17 -2.02 10.65 5.71 0.06 -1.95 16 6 C 0.00 0.01 5.81 -35.63 -0.21 -0.20 16 7 C -0.06 -0.48 5.22 -29.03 -0.15 -0.64 16 8 C 0.53 6.57 7.84 -10.99 -0.09 6.49 16 9 O -0.53 -8.91 16.29 5.55 0.09 -8.82 16 10 N -0.62 -6.97 3.33 -170.54 -0.57 -7.54 16 11 C 0.10 0.81 6.48 -3.07 -0.02 0.79 16 12 C -0.12 -1.24 5.44 -24.90 -0.14 -1.38 16 13 C 0.07 0.90 2.71 -65.58 -0.18 0.72 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 15 N -0.52 -8.64 4.53 -223.79 -1.01 -9.65 16 16 C 0.04 0.66 5.49 -3.70 -0.02 0.64 16 17 C 0.18 4.20 5.39 -3.60 -0.02 4.18 16 18 N -0.60 -14.88 3.03 -172.02 -0.52 -15.40 16 19 C -0.25 -6.91 9.62 -15.06 -0.14 -7.06 16 20 H 0.06 1.71 7.87 -52.49 -0.41 1.30 16 21 C 0.00 0.07 4.98 -17.43 -0.09 -0.01 16 22 N -0.90 -25.94 11.17 55.49 0.62 -25.32 16 23 Si 0.90 21.56 29.58 -169.99 -5.03 16.54 16 24 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 26 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 27 C 0.15 3.15 6.69 -3.61 -0.02 3.13 16 28 C 0.04 0.72 5.46 -3.70 -0.02 0.70 16 29 C 0.12 1.53 5.23 -2.54 -0.01 1.52 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.43 7.14 -51.93 -0.37 0.06 16 33 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.20 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.12 0.73 7.14 -51.93 -0.37 0.36 16 37 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.74 7.94 -51.93 -0.41 0.33 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 1.00 6.93 -51.93 -0.36 0.64 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.26 6.21 -51.93 -0.32 1.93 16 45 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.15 7.95 -51.93 -0.41 0.74 16 48 H 0.06 0.99 6.73 -51.93 -0.35 0.64 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 51 H 0.07 1.08 7.74 -51.93 -0.40 0.68 16 LS Contribution 403.35 15.07 6.08 6.08 Total: -1.00 -33.87 403.35 -10.21 -44.08 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -8.47 Total: -1.76 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.46 Total: 3.76 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -1.48 Total: -57.92 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: 0.15 Total: -10.78 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.87 -10.21 -44.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052079098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.697 kcal (2) G-P(sol) polarization free energy of solvation -33.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.084 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds