Wall clock time and date at job start Wed Apr 1 2020 04:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41377 * 126.57803 * 2 1 4 4 C 1.34516 * 106.84148 * 179.97438 * 3 2 1 5 5 O 1.34302 * 108.41915 * 0.02562 * 4 3 2 6 6 C 1.34304 * 109.47518 * 359.77019 * 5 4 3 7 7 C 1.50699 * 125.78669 * 180.24013 * 6 5 4 8 8 C 1.50701 * 109.47138 * 270.15947 * 7 6 5 9 9 O 1.21287 * 119.99781 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00233 * 180.02562 * 8 7 6 11 11 C 1.47024 * 125.64789 * 359.69147 * 10 8 7 12 12 C 1.54316 * 107.27336 * 180.97207 * 11 10 8 13 13 C 1.55151 * 102.86569 * 22.52587 * 12 11 10 14 14 H 1.09000 * 111.00878 * 82.37916 * 13 12 11 15 15 N 1.46900 * 111.03618 * 206.21742 * 13 12 11 16 16 C 1.46905 * 110.99891 * 296.23263 * 15 13 12 17 17 C 1.53240 * 109.34071 * 172.74527 * 16 15 13 18 18 N 1.47086 * 108.51826 * 53.83573 * 17 16 15 19 19 C 1.36934 * 120.88191 * 128.79790 * 18 17 16 20 20 H 1.08001 * 119.99377 * 208.80829 * 19 18 17 21 21 C 1.38807 * 120.00111 * 28.79650 * 19 18 17 22 22 N 1.31619 * 120.00191 * 14.68330 * 21 19 18 23 23 Si 1.86806 * 120.00189 * 194.67698 * 21 19 18 24 24 H 1.48495 * 109.46718 * 60.00221 * 23 21 19 25 25 H 1.48493 * 109.47365 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46975 * 300.00318 * 23 21 19 27 27 C 1.47075 * 118.23484 * 308.81152 * 18 17 16 28 28 C 1.46901 * 111.00302 * 171.93644 * 15 13 12 29 29 C 1.47427 * 125.64916 * 180.02562 * 10 8 7 30 30 H 1.09002 * 109.46924 * 90.02588 * 1 2 3 31 31 H 1.09003 * 109.47159 * 330.02383 * 1 2 3 32 32 H 1.09001 * 109.47217 * 210.02495 * 1 2 3 33 33 H 1.08005 * 126.58371 * 0.02562 * 3 2 1 34 34 H 1.07999 * 125.78749 * 180.02562 * 4 3 2 35 35 H 1.08996 * 109.47625 * 30.15748 * 7 6 5 36 36 H 1.09001 * 109.47191 * 150.16239 * 7 6 5 37 37 H 1.09004 * 109.88100 * 300.51378 * 11 10 8 38 38 H 1.08995 * 109.88170 * 61.67952 * 11 10 8 39 39 H 1.08999 * 110.92149 * 264.10850 * 12 11 10 40 40 H 1.08998 * 110.74275 * 140.85824 * 12 11 10 41 41 H 1.08994 * 109.49668 * 292.70902 * 16 15 13 42 42 H 1.09001 * 109.49001 * 52.78817 * 16 15 13 43 43 H 1.08994 * 109.62992 * 294.12786 * 17 16 15 44 44 H 1.08992 * 109.62782 * 173.54358 * 17 16 15 45 45 H 0.96997 * 119.99996 * 180.02562 * 22 21 19 46 46 H 1.09002 * 109.63496 * 291.47787 * 27 18 17 47 47 H 1.09003 * 109.62897 * 170.90018 * 27 18 17 48 48 H 1.09004 * 109.48939 * 307.21506 * 28 15 13 49 49 H 1.09007 * 109.49236 * 67.25890 * 28 15 13 50 50 H 1.08995 * 110.36682 * 274.67286 * 29 10 8 51 51 H 1.09001 * 110.36699 * 36.99443 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3495 1.1353 0.0000 4 6 3.6157 0.6811 0.0006 5 8 3.5848 -0.6616 0.0004 6 6 2.3086 -1.0801 0.0047 7 6 1.8523 -2.5164 0.0111 8 6 1.7008 -3.0016 -1.4076 9 8 1.9395 -2.2545 -2.3328 10 7 1.2991 -4.2654 -1.6483 11 6 0.9830 -5.2734 -0.6258 12 6 0.5952 -6.5708 -1.3660 13 6 1.2681 -6.3919 -2.7524 14 1 2.3202 -6.6745 -2.7155 15 7 0.5568 -7.1555 -3.7863 16 6 0.6264 -8.5979 -3.5169 17 6 -0.2735 -9.3434 -4.5083 18 7 0.1057 -8.9466 -5.8729 19 6 0.3719 -9.8887 -6.8304 20 1 1.0620 -9.6653 -7.6305 21 6 -0.2452 -11.1307 -6.7725 22 7 -1.2865 -11.3123 -5.9882 23 14 0.4021 -12.5445 -7.8077 24 1 1.8115 -12.8264 -7.4345 25 1 -0.4254 -13.7538 -7.5671 26 1 0.3346 -12.1770 -9.2450 27 6 0.1918 -7.5112 -6.1816 28 6 1.0732 -6.8379 -5.1244 29 6 1.1107 -4.8680 -2.9805 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 0.8902 0.5135 32 1 -0.3634 -0.8898 0.5142 33 1 2.0367 2.1691 0.0004 34 1 4.5060 1.2924 0.0011 35 1 2.5901 -3.1298 0.5280 36 1 0.8938 -2.5908 0.5248 37 1 1.8557 -5.4499 0.0030 38 1 0.1465 -4.9328 -0.0157 39 1 -0.4869 -6.6510 -1.4699 40 1 0.9974 -7.4436 -0.8517 41 1 1.6549 -8.9401 -3.6310 42 1 0.2879 -8.7946 -2.4996 43 1 -1.3154 -9.0800 -4.3266 44 1 -0.1384 -10.4183 -4.3886 45 1 -1.7174 -12.1804 -5.9475 46 1 -0.8054 -7.0717 -6.1608 47 1 0.6345 -7.3748 -7.1683 48 1 1.0590 -5.7581 -5.2728 49 1 2.0959 -7.2041 -5.2159 50 1 0.1146 -4.6426 -3.3614 51 1 1.8726 -4.5071 -3.6714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052079098.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:50 Heat of formation + Delta-G solvation = -2.385282 kcal Electronic energy + Delta-G solvation = -30712.457919 eV Core-core repulsion = 26613.507705 eV Total energy + Delta-G solvation = -4098.950214 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -43.53265 -41.23407 -39.82206 -38.11577 -35.82317 -35.22886 -33.57380 -33.03094 -31.82894 -31.52094 -30.07301 -29.39683 -27.86427 -26.80551 -25.08072 -24.45816 -23.55564 -22.40895 -21.64115 -21.04182 -20.80206 -20.01178 -18.83054 -18.38650 -17.94556 -17.57854 -16.92939 -16.84151 -16.46637 -16.07553 -15.62658 -15.50773 -15.33843 -15.27120 -15.07374 -14.95709 -14.54502 -14.43167 -14.01745 -13.99607 -13.73123 -13.65802 -13.60089 -13.36943 -13.29270 -12.95834 -12.92399 -12.67854 -12.56337 -12.51767 -12.34167 -12.19519 -12.02429 -11.87966 -11.79546 -11.44739 -11.37312 -11.09399 -10.58570 -10.51559 -9.72251 -9.32815 -9.29175 -8.65310 -7.87652 -5.34864 0.72963 1.46875 1.48306 1.52289 1.55558 1.60051 1.89199 2.20543 2.50364 2.95849 3.28072 3.33011 3.60758 3.67083 3.70888 3.85964 3.99116 4.05049 4.08390 4.19745 4.24066 4.31984 4.36185 4.37774 4.39369 4.55580 4.59292 4.64304 4.65993 4.68576 4.80645 4.81379 4.86144 4.87873 4.91655 4.95365 5.01977 5.04512 5.15473 5.18711 5.19976 5.28567 5.32690 5.37134 5.61170 5.67528 5.70839 6.12483 6.21633 6.23956 6.38570 6.45007 7.04900 7.14382 7.83543 8.38463 9.18744 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.031333 B = 0.001861 C = 0.001833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.417686 B =15041.541642 C =15270.767264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.180 4.180 3 C -0.229 4.229 4 C -0.041 4.041 5 O -0.193 6.193 6 C -0.025 4.025 7 C -0.046 4.046 8 C 0.526 3.474 9 O -0.584 6.584 10 N -0.615 5.615 11 C 0.100 3.900 12 C -0.118 4.118 13 C 0.070 3.930 14 H 0.050 0.950 15 N -0.526 5.526 16 C 0.055 3.945 17 C 0.186 3.814 18 N -0.614 5.614 19 C -0.267 4.267 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.291 1.291 26 H -0.278 1.278 27 C 0.146 3.854 28 C 0.054 3.946 29 C 0.121 3.879 30 H 0.055 0.945 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.165 0.835 34 H 0.235 0.765 35 H 0.136 0.864 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.017 0.983 47 H 0.056 0.944 48 H 0.084 0.916 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.339 19.895 20.408 29.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.181 4.181 3 C -0.247 4.247 4 C -0.107 4.107 5 O -0.090 6.090 6 C -0.075 4.075 7 C -0.085 4.085 8 C 0.316 3.684 9 O -0.464 6.464 10 N -0.349 5.349 11 C -0.022 4.022 12 C -0.156 4.156 13 C -0.040 4.040 14 H 0.068 0.932 15 N -0.251 5.251 16 C -0.074 4.074 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.397 4.397 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.203 1.203 27 C 0.020 3.980 28 C -0.075 4.075 29 C -0.002 4.002 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.183 0.817 34 H 0.251 0.749 35 H 0.153 0.847 36 H 0.171 0.829 37 H 0.115 0.885 38 H 0.120 0.880 39 H 0.104 0.896 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.111 0.889 43 H 0.020 0.980 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.035 0.965 47 H 0.075 0.925 48 H 0.102 0.898 49 H 0.040 0.960 50 H 0.088 0.912 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.134 20.152 19.963 29.022 hybrid contribution 0.873 -0.933 -1.277 1.807 sum 7.008 19.219 18.686 27.706 Atomic orbital electron populations 1.20246 0.88043 1.03838 1.01871 1.20611 0.98255 0.92445 1.06835 1.22052 0.92855 1.00591 1.09251 1.24695 1.01095 0.80016 1.04934 1.83966 1.29214 1.24038 1.71784 1.21699 0.81237 0.96170 1.08348 1.20135 1.06357 0.88719 0.93308 1.20673 0.75847 0.79964 0.91965 1.90733 1.52233 1.55566 1.47837 1.48490 1.66420 1.11318 1.08666 1.22385 1.02831 0.86491 0.90483 1.22712 1.02247 0.97887 0.92762 1.22757 0.96090 0.91887 0.93228 0.93192 1.61941 1.55009 1.06638 1.01517 1.22583 0.97986 0.86748 1.00098 1.20635 0.93703 0.97192 0.82459 1.44375 1.80968 1.00802 1.07714 1.19444 1.19111 0.94464 1.06686 0.91945 1.25833 0.96059 1.01723 1.00768 1.70152 1.21299 1.23267 1.43159 0.85327 0.77614 0.78672 0.78706 1.20442 1.21744 1.20338 1.21086 0.96548 0.84303 0.96086 1.22456 0.95955 0.99738 0.89381 1.22022 1.01265 0.91824 0.85132 0.92605 0.90135 0.90176 0.81746 0.74910 0.84660 0.82870 0.88459 0.87984 0.89604 0.88236 0.96414 0.88898 0.98043 0.92529 0.93960 0.96543 0.92543 0.89782 0.96009 0.91199 0.92509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.26 10.18 71.24 0.73 -0.53 16 2 C -0.18 -3.60 6.16 -19.94 -0.12 -3.72 16 3 C -0.23 -4.11 10.87 22.19 0.24 -3.86 16 4 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 5 O -0.19 -4.35 10.65 -2.49 -0.03 -4.38 16 6 C -0.02 -0.52 5.81 24.83 0.14 -0.37 16 7 C -0.05 -0.68 5.22 29.10 0.15 -0.53 16 8 C 0.53 12.20 7.84 87.66 0.69 12.89 16 9 O -0.58 -19.77 16.29 -3.05 -0.05 -19.82 16 10 N -0.62 -12.43 3.33 -811.84 -2.70 -15.13 16 11 C 0.10 1.19 6.48 86.73 0.56 1.75 16 12 C -0.12 -1.97 5.44 31.78 0.17 -1.80 16 13 C 0.07 1.69 2.71 46.30 0.13 1.82 16 14 H 0.05 1.26 8.14 -2.39 -0.02 1.25 16 15 N -0.53 -16.97 4.53 -861.93 -3.90 -20.87 16 16 C 0.05 1.97 5.49 86.38 0.47 2.44 16 17 C 0.19 8.90 5.39 86.35 0.47 9.36 16 18 N -0.61 -31.47 3.03 -698.15 -2.11 -33.58 16 19 C -0.27 -14.89 9.62 84.03 0.81 -14.08 16 20 H 0.06 3.41 7.87 -2.91 -0.02 3.39 16 21 C -0.05 -2.70 4.98 84.86 0.42 -2.28 16 22 N -0.93 -54.93 11.17 21.65 0.24 -54.69 16 23 Si 0.97 44.89 29.58 68.60 2.03 46.92 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 26 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 27 C 0.15 6.27 6.69 86.35 0.58 6.85 16 28 C 0.05 1.89 5.46 86.38 0.47 2.37 16 29 C 0.12 3.04 5.23 86.85 0.45 3.50 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.08 0.89 7.14 -2.39 -0.02 0.87 16 33 H 0.16 2.15 8.06 -2.91 -0.02 2.13 16 34 H 0.23 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.14 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.15 1.19 7.14 -2.39 -0.02 1.18 16 37 H 0.10 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.36 7.94 -2.39 -0.02 1.34 16 41 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 42 H 0.09 2.77 6.93 -2.39 -0.02 2.75 16 43 H 0.00 0.08 8.14 -2.39 -0.02 0.06 16 44 H 0.06 3.03 6.21 -2.39 -0.01 3.02 16 45 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 48 H 0.08 2.60 6.73 -2.38 -0.02 2.58 16 49 H 0.02 0.79 8.14 -2.38 -0.02 0.78 16 50 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.06 1.63 7.74 -2.39 -0.02 1.61 16 Total: -1.00 -77.41 403.35 1.56 -75.86 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: 0.91 Total: 11.78 kcal Atomic # 6 Polarization: 6.74 SS G_CDS: 7.17 Total: 13.91 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -8.48 Total: -124.27 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.08 Total: -24.20 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 2.03 Total: 46.92 kcal Total: -77.41 1.56 -75.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052079098.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.474 kcal (2) G-P(sol) polarization free energy of solvation -77.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds