Wall clock time and date at job start Wed Apr 1 2020 05:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41261 * 126.70389 * 2 1 4 4 C 1.36825 * 103.84520 * 180.09776 * 3 2 1 5 5 C 1.47509 * 126.94446 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00079 * 352.85237 * 5 4 3 7 7 N 1.34782 * 120.00263 * 172.85058 * 5 4 3 8 8 C 1.46926 * 120.62582 * 353.72456 * 7 5 4 9 9 C 1.53189 * 108.77193 * 233.57933 * 8 7 5 10 10 C 1.53039 * 109.34212 * 305.35222 * 9 8 7 11 11 C 1.53106 * 109.50279 * 61.35193 * 10 9 8 12 12 H 1.08993 * 109.49164 * 58.61335 * 11 10 9 13 13 C 1.53002 * 109.51614 * 178.68517 * 11 10 9 14 14 H 1.08998 * 109.49675 * 59.86172 * 13 11 10 15 15 C 1.53034 * 109.49771 * 179.97438 * 13 11 10 16 16 C 1.53045 * 109.53724 * 181.31357 * 15 13 11 17 17 C 1.53184 * 109.31265 * 298.63452 * 16 15 13 18 18 N 1.46931 * 108.77727 * 54.63686 * 17 16 15 19 19 C 1.36941 * 120.63234 * 126.42972 * 18 17 16 20 20 H 1.08002 * 119.99504 * 214.61308 * 19 18 17 21 21 C 1.38815 * 119.99665 * 34.61909 * 19 18 17 22 22 N 1.31614 * 120.00217 * 5.62252 * 21 19 18 23 23 Si 1.86801 * 119.99439 * 185.62421 * 21 19 18 24 24 H 1.48503 * 109.47207 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47017 * 119.99706 * 23 21 19 26 26 H 1.48497 * 109.47127 * 239.99603 * 23 21 19 27 27 C 1.46935 * 118.76039 * 306.41363 * 18 17 16 28 28 C 1.46928 * 120.63146 * 173.69935 * 7 5 4 29 29 O 1.34636 * 106.11317 * 359.67034 * 4 3 2 30 30 N 1.20888 * 111.46949 * 0.22370 * 29 4 3 31 31 H 1.08996 * 109.47155 * 270.25942 * 1 2 3 32 32 H 1.09004 * 109.46862 * 30.26301 * 1 2 3 33 33 H 1.08996 * 109.46689 * 150.25678 * 1 2 3 34 34 H 1.07999 * 128.07733 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.58412 * 113.79821 * 8 7 5 36 36 H 1.08988 * 109.70453 * 353.44198 * 8 7 5 37 37 H 1.09007 * 109.49785 * 65.32200 * 9 8 7 38 38 H 1.08997 * 109.49592 * 185.38330 * 9 8 7 39 39 H 1.09003 * 109.46077 * 181.39901 * 10 9 8 40 40 H 1.08993 * 109.46135 * 301.35847 * 10 9 8 41 41 H 1.09001 * 109.46296 * 301.33517 * 15 13 11 42 42 H 1.08995 * 109.46426 * 61.29503 * 15 13 11 43 43 H 1.09003 * 109.49586 * 58.58527 * 16 15 13 44 44 H 1.08998 * 109.49605 * 178.64775 * 16 15 13 45 45 H 1.09004 * 109.58715 * 174.42170 * 17 16 15 46 46 H 1.08993 * 109.59461 * 294.84743 * 17 16 15 47 47 H 0.96999 * 119.99790 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.55713 * 293.77973 * 27 18 17 49 49 H 1.09004 * 109.61352 * 173.35812 * 27 18 17 50 50 H 1.09006 * 109.58471 * 246.20601 * 28 7 5 51 51 H 1.09004 * 109.58710 * 6.48514 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0023 5 6 4.8871 1.3430 -0.0038 6 8 4.8868 2.5518 -0.1341 7 7 6.0523 0.6809 0.1393 8 6 6.0640 -0.7584 0.4344 9 6 6.9218 -0.9991 1.6806 10 6 8.3096 -0.3908 1.4659 11 6 8.1783 1.1198 1.2536 12 1 7.6936 1.5681 2.1208 13 6 9.5681 1.7331 1.0716 14 1 10.0534 1.2839 0.2051 15 6 9.4364 3.2429 0.8589 16 6 10.8236 3.8525 0.6441 17 6 11.6808 3.6129 1.8908 18 7 11.6934 2.1738 2.1867 19 6 12.8776 1.5019 2.3333 20 1 12.9617 0.4774 2.0021 21 6 13.9698 2.1377 2.9078 22 7 13.8376 3.3464 3.4117 23 14 15.6270 1.2777 2.9655 24 1 15.5115 -0.0624 2.3362 25 1 16.6301 2.0860 2.2267 26 1 16.0571 1.1262 4.3787 27 6 10.4115 1.4688 2.3228 28 6 7.3348 1.3846 0.0026 29 8 3.4540 -0.7360 0.0040 30 7 2.2848 -1.0433 0.0052 31 1 -0.3633 0.0047 1.0276 32 1 -0.3633 0.8877 -0.5179 33 1 -0.3632 -0.8923 -0.5098 34 1 2.0678 2.1747 -0.0004 35 1 6.4872 -1.3013 -0.4109 36 1 5.0470 -1.1041 0.6185 37 1 6.4489 -0.5308 2.5438 38 1 7.0174 -2.0708 1.8549 39 1 8.9297 -0.5826 2.3416 40 1 8.7720 -0.8419 0.5880 41 1 8.8164 3.4334 -0.0171 42 1 8.9733 3.6942 1.7363 43 1 11.2973 3.3840 -0.2187 44 1 10.7269 4.9239 0.4687 45 1 12.6986 3.9569 1.7061 46 1 11.2572 4.1559 2.7355 47 1 14.6009 3.7907 3.8127 48 1 9.8844 1.8367 3.2032 49 1 10.5914 0.3984 2.4229 50 1 7.8615 1.0165 -0.8780 51 1 7.1553 2.4548 -0.0999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053004303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:12 Heat of formation + Delta-G solvation = 41.472282 kcal Electronic energy + Delta-G solvation = -31368.698759 eV Core-core repulsion = 27271.650352 eV Total energy + Delta-G solvation = -4097.048407 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -45.39877 -40.45879 -38.49306 -36.90526 -35.32616 -34.06341 -32.78214 -32.31637 -31.42677 -30.38160 -29.21004 -28.35291 -26.29824 -25.14721 -24.08870 -23.32382 -23.02520 -21.79857 -21.32978 -20.19943 -19.62750 -19.02382 -18.21121 -17.80673 -16.85157 -16.53845 -16.34047 -15.42920 -14.88475 -14.71595 -14.55586 -14.21008 -13.99994 -13.86853 -13.77947 -13.70497 -13.58520 -13.26612 -13.15045 -13.07475 -13.01566 -12.54256 -12.34240 -12.12060 -11.79981 -11.59264 -11.36271 -11.13097 -10.89675 -10.87240 -10.69845 -10.57714 -10.51265 -10.33708 -10.29008 -10.08851 -10.07641 -10.06158 -9.85004 -9.37246 -9.31580 -8.83983 -8.45001 -6.51664 -5.75539 -3.27347 0.45794 1.65560 2.20742 2.64908 2.84289 3.36886 3.44279 3.46099 3.64186 3.92487 4.39622 4.48774 4.57211 4.68848 4.81452 4.85606 4.89077 4.98024 5.01298 5.14283 5.16004 5.28924 5.36606 5.41402 5.45532 5.53825 5.61240 5.61477 5.68477 5.72797 5.76574 5.83486 5.95509 5.99416 6.10062 6.15247 6.29423 6.32528 6.45480 6.47449 6.53650 6.71828 6.77918 6.89342 6.96705 6.98804 7.07868 7.48683 7.56939 7.77255 7.79276 7.82159 8.53719 9.26961 9.87430 10.47735 11.31903 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.002172 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.366953 B =12886.221929 C =13602.885036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.013 3.987 3 C -0.153 4.153 4 C -0.076 4.076 5 C 0.600 3.400 6 O -0.513 6.513 7 N -0.594 5.594 8 C 0.095 3.905 9 C -0.133 4.133 10 C -0.118 4.118 11 C -0.092 4.092 12 H 0.073 0.927 13 C -0.095 4.095 14 H 0.068 0.932 15 C -0.106 4.106 16 C -0.143 4.143 17 C 0.171 3.829 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.062 0.938 21 C 0.005 3.995 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.277 1.277 25 H -0.290 1.290 26 H -0.290 1.290 27 C 0.155 3.845 28 C 0.115 3.885 29 O 0.114 5.886 30 N -0.351 5.351 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.183 0.817 35 H 0.077 0.923 36 H 0.096 0.904 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.045 0.955 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.046 0.954 45 H 0.085 0.915 46 H 0.016 0.984 47 H 0.253 0.747 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.760 -7.188 -7.495 25.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.145 4.145 3 C -0.175 4.175 4 C -0.142 4.142 5 C 0.385 3.615 6 O -0.389 6.389 7 N -0.326 5.326 8 C -0.028 4.028 9 C -0.171 4.171 10 C -0.156 4.156 11 C -0.112 4.112 12 H 0.092 0.908 13 C -0.116 4.116 14 H 0.086 0.914 15 C -0.143 4.143 16 C -0.182 4.182 17 C 0.046 3.954 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.080 0.920 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.202 1.202 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.028 3.972 28 C -0.006 4.006 29 O 0.045 5.955 30 N -0.055 5.055 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.201 0.799 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.085 0.915 38 H 0.096 0.904 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.103 0.897 46 H 0.034 0.966 47 H 0.063 0.937 48 H 0.033 0.967 49 H 0.072 0.928 50 H 0.092 0.908 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -23.821 -7.748 -7.474 26.141 hybrid contribution 0.822 0.390 0.120 0.917 sum -23.000 -7.358 -7.354 25.243 Atomic orbital electron populations 1.20221 0.85237 1.04164 1.03770 1.23654 0.99382 0.88275 1.03232 1.22887 0.89946 1.01800 1.02899 1.24291 0.97402 0.83877 1.08594 1.16670 0.80953 0.85958 0.77885 1.90880 1.85500 1.12072 1.50458 1.48085 1.05797 1.10325 1.68349 1.22200 1.02130 0.79755 0.98703 1.21928 0.96441 1.01597 0.97166 1.21667 0.95946 0.94927 1.03053 1.21545 0.96448 0.95921 0.97295 0.90848 1.21660 0.93094 0.95431 1.01393 0.91374 1.21493 0.97485 0.95260 1.00081 1.22200 0.96140 0.98345 1.01564 1.20783 0.99111 0.84517 0.91013 1.43979 1.00314 1.05250 1.81921 1.19179 0.88523 0.97309 1.33158 0.92005 1.25275 0.99294 0.97163 0.97595 1.69965 1.29727 1.13476 1.41642 0.86215 0.84118 0.79087 0.77312 1.20234 1.21639 1.21633 1.20937 0.87366 0.96140 0.92708 1.21969 0.81308 0.98667 0.98606 1.85100 1.20934 1.22238 1.67242 1.73720 0.89762 1.24637 1.17408 0.89810 0.89645 0.90235 0.79920 0.90468 0.88674 0.91477 0.90351 0.90427 0.91578 0.93630 0.92833 0.92951 0.93518 0.89670 0.96619 0.93679 0.96732 0.92810 0.90820 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.38 10.47 36.01 0.38 -0.01 16 2 C 0.01 0.11 7.31 -82.16 -0.60 -0.49 16 3 C -0.15 -1.41 10.92 -38.95 -0.43 -1.84 16 4 C -0.08 -0.82 6.91 -36.32 -0.25 -1.07 16 5 C 0.60 7.50 7.68 -12.48 -0.10 7.41 16 6 O -0.51 -7.85 16.34 5.29 0.09 -7.76 16 7 N -0.59 -6.74 2.97 -174.00 -0.52 -7.25 16 8 C 0.09 0.86 6.16 -3.71 -0.02 0.84 16 9 C -0.13 -1.24 6.08 -26.61 -0.16 -1.40 16 10 C -0.12 -1.35 4.87 -26.66 -0.13 -1.48 16 11 C -0.09 -1.21 1.92 -90.47 -0.17 -1.38 16 12 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 13 C -0.09 -1.54 1.92 -90.50 -0.17 -1.72 16 14 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 15 C -0.11 -1.78 4.86 -26.69 -0.13 -1.91 16 16 C -0.14 -2.77 6.08 -26.61 -0.16 -2.93 16 17 C 0.17 4.13 5.22 -3.71 -0.02 4.11 16 18 N -0.59 -14.71 2.98 -172.31 -0.51 -15.22 16 19 C -0.25 -6.84 9.56 -15.06 -0.14 -6.99 16 20 H 0.06 1.65 7.83 -52.49 -0.41 1.24 16 21 C 0.01 0.15 5.14 -17.43 -0.09 0.06 16 22 N -0.90 -26.26 11.02 55.49 0.61 -25.65 16 23 Si 0.90 21.61 29.56 -169.99 -5.02 16.58 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 27 C 0.16 3.14 5.28 -3.71 -0.02 3.12 16 28 C 0.12 1.41 5.20 -3.71 -0.02 1.39 16 29 O 0.11 1.18 7.91 15.57 0.12 1.31 16 30 N -0.35 -3.69 12.04 33.52 0.40 -3.28 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.18 1.36 8.06 -52.49 -0.42 0.94 16 35 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.10 0.83 4.23 -52.78 -0.22 0.61 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.08 0.96 6.50 -51.93 -0.34 0.63 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.05 0.68 6.50 -51.93 -0.34 0.34 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 45 H 0.09 2.30 6.20 -51.93 -0.32 1.98 16 46 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 48 H 0.01 0.31 8.14 -51.92 -0.42 -0.11 16 49 H 0.05 1.06 6.52 -51.93 -0.34 0.72 16 50 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 51 H 0.10 1.35 5.59 -51.93 -0.29 1.06 16 LS Contribution 391.60 15.07 5.90 5.90 Total: -1.00 -31.47 391.60 -9.33 -40.80 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -8.16 Total: -1.14 kcal Atomic # 6 Polarization: -2.03 SS G_CDS: -2.24 Total: -4.28 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.02 Total: -51.41 kcal Atomic # 8 Polarization: -6.67 SS G_CDS: 0.21 Total: -6.46 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.47 -9.33 -40.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053004303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.271 kcal (2) G-P(sol) polarization free energy of solvation -31.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds