Wall clock time and date at job start Wed Apr 1 2020 05:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.41261 * 126.70389 * 2 1 4 4 C 1.36825 * 103.84520 * 180.09776 * 3 2 1 5 5 C 1.47509 * 126.94446 * 179.97438 * 4 3 2 6 6 O 1.21588 * 120.00079 * 352.85237 * 5 4 3 7 7 N 1.34782 * 120.00263 * 172.85058 * 5 4 3 8 8 C 1.46926 * 120.62582 * 353.72456 * 7 5 4 9 9 C 1.53189 * 108.77193 * 233.57933 * 8 7 5 10 10 C 1.53039 * 109.34212 * 305.35222 * 9 8 7 11 11 C 1.53106 * 109.50279 * 61.35193 * 10 9 8 12 12 H 1.08993 * 109.49164 * 58.61335 * 11 10 9 13 13 C 1.53002 * 109.51614 * 178.68517 * 11 10 9 14 14 H 1.08998 * 109.49675 * 59.86172 * 13 11 10 15 15 C 1.53034 * 109.49771 * 179.97438 * 13 11 10 16 16 C 1.53045 * 109.53724 * 181.31357 * 15 13 11 17 17 C 1.53184 * 109.31265 * 298.63452 * 16 15 13 18 18 N 1.46931 * 108.77727 * 54.63686 * 17 16 15 19 19 C 1.36941 * 120.63234 * 126.42972 * 18 17 16 20 20 H 1.08002 * 119.99504 * 214.61308 * 19 18 17 21 21 C 1.38815 * 119.99665 * 34.61909 * 19 18 17 22 22 N 1.31614 * 120.00217 * 5.62252 * 21 19 18 23 23 Si 1.86801 * 119.99439 * 185.62421 * 21 19 18 24 24 H 1.48503 * 109.47207 * 0.02562 * 23 21 19 25 25 H 1.48500 * 109.47017 * 119.99706 * 23 21 19 26 26 H 1.48497 * 109.47127 * 239.99603 * 23 21 19 27 27 C 1.46935 * 118.76039 * 306.41363 * 18 17 16 28 28 C 1.46928 * 120.63146 * 173.69935 * 7 5 4 29 29 O 1.34636 * 106.11317 * 359.67034 * 4 3 2 30 30 N 1.20888 * 111.46949 * 0.22370 * 29 4 3 31 31 H 1.08996 * 109.47155 * 270.25942 * 1 2 3 32 32 H 1.09004 * 109.46862 * 30.26301 * 1 2 3 33 33 H 1.08996 * 109.46689 * 150.25678 * 1 2 3 34 34 H 1.07999 * 128.07733 * 359.97438 * 3 2 1 35 35 H 1.09006 * 109.58412 * 113.79821 * 8 7 5 36 36 H 1.08988 * 109.70453 * 353.44198 * 8 7 5 37 37 H 1.09007 * 109.49785 * 65.32200 * 9 8 7 38 38 H 1.08997 * 109.49592 * 185.38330 * 9 8 7 39 39 H 1.09003 * 109.46077 * 181.39901 * 10 9 8 40 40 H 1.08993 * 109.46135 * 301.35847 * 10 9 8 41 41 H 1.09001 * 109.46296 * 301.33517 * 15 13 11 42 42 H 1.08995 * 109.46426 * 61.29503 * 15 13 11 43 43 H 1.09003 * 109.49586 * 58.58527 * 16 15 13 44 44 H 1.08998 * 109.49605 * 178.64775 * 16 15 13 45 45 H 1.09004 * 109.58715 * 174.42170 * 17 16 15 46 46 H 1.08993 * 109.59461 * 294.84743 * 17 16 15 47 47 H 0.96999 * 119.99790 * 180.02562 * 22 21 19 48 48 H 1.09008 * 109.55713 * 293.77973 * 27 18 17 49 49 H 1.09004 * 109.61352 * 173.35812 * 27 18 17 50 50 H 1.09006 * 109.58471 * 246.20601 * 28 7 5 51 51 H 1.09004 * 109.58710 * 6.48514 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3513 1.1325 0.0000 4 6 3.6121 0.6010 -0.0023 5 6 4.8871 1.3430 -0.0038 6 8 4.8868 2.5518 -0.1341 7 7 6.0523 0.6809 0.1393 8 6 6.0640 -0.7584 0.4344 9 6 6.9218 -0.9991 1.6806 10 6 8.3096 -0.3908 1.4659 11 6 8.1783 1.1198 1.2536 12 1 7.6936 1.5681 2.1208 13 6 9.5681 1.7331 1.0716 14 1 10.0534 1.2839 0.2051 15 6 9.4364 3.2429 0.8589 16 6 10.8236 3.8525 0.6441 17 6 11.6808 3.6129 1.8908 18 7 11.6934 2.1738 2.1867 19 6 12.8776 1.5019 2.3333 20 1 12.9617 0.4774 2.0021 21 6 13.9698 2.1377 2.9078 22 7 13.8376 3.3464 3.4117 23 14 15.6270 1.2777 2.9655 24 1 15.5115 -0.0624 2.3362 25 1 16.6301 2.0860 2.2267 26 1 16.0571 1.1262 4.3787 27 6 10.4115 1.4688 2.3228 28 6 7.3348 1.3846 0.0026 29 8 3.4540 -0.7360 0.0040 30 7 2.2848 -1.0433 0.0052 31 1 -0.3633 0.0047 1.0276 32 1 -0.3633 0.8877 -0.5179 33 1 -0.3632 -0.8923 -0.5098 34 1 2.0678 2.1747 -0.0004 35 1 6.4872 -1.3013 -0.4109 36 1 5.0470 -1.1041 0.6185 37 1 6.4489 -0.5308 2.5438 38 1 7.0174 -2.0708 1.8549 39 1 8.9297 -0.5826 2.3416 40 1 8.7720 -0.8419 0.5880 41 1 8.8164 3.4334 -0.0171 42 1 8.9733 3.6942 1.7363 43 1 11.2973 3.3840 -0.2187 44 1 10.7269 4.9239 0.4687 45 1 12.6986 3.9569 1.7061 46 1 11.2572 4.1559 2.7355 47 1 14.6009 3.7907 3.8127 48 1 9.8844 1.8367 3.2032 49 1 10.5914 0.3984 2.4229 50 1 7.8615 1.0165 -0.8780 51 1 7.1553 2.4548 -0.0999 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053004303.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:11 Heat of formation + Delta-G solvation = 24.184661 kcal Electronic energy + Delta-G solvation = -31369.448406 eV Core-core repulsion = 27271.650352 eV Total energy + Delta-G solvation = -4097.798054 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.11724 -41.43475 -39.78511 -38.19330 -36.05458 -35.49155 -34.12328 -33.12874 -32.71182 -32.17182 -29.90739 -29.52334 -27.47405 -26.82138 -25.13920 -24.39373 -23.95127 -23.16920 -22.66480 -21.26974 -20.65009 -20.45355 -18.95424 -18.73623 -18.51703 -17.63502 -17.19839 -16.86562 -16.38036 -15.82224 -15.71177 -15.39059 -15.17684 -14.91844 -14.82615 -14.79637 -14.42864 -14.27860 -14.21655 -14.11869 -14.01957 -13.74283 -13.69253 -13.52203 -13.00934 -12.89445 -12.74432 -12.43803 -12.39548 -12.26745 -11.98282 -11.90641 -11.82618 -11.70169 -11.59659 -11.46535 -11.38227 -11.13228 -10.96395 -10.85588 -10.76726 -10.54717 -9.78395 -8.54267 -7.84332 -5.39921 -0.33990 0.98295 1.37229 1.46363 1.47322 1.58045 1.76509 2.01722 2.50869 3.04718 3.18396 3.31290 3.61047 3.67945 3.81822 3.86871 3.89101 3.97411 4.05240 4.18396 4.24945 4.30821 4.36001 4.40403 4.55008 4.59814 4.66355 4.69888 4.73227 4.76536 4.78807 4.86334 4.87292 4.90651 4.95003 5.00464 5.06187 5.12481 5.14759 5.19749 5.27946 5.37867 5.39157 5.41231 5.47072 5.55404 5.61946 5.69764 5.82537 6.08523 6.45708 6.68787 7.02982 7.19057 7.88352 8.43266 9.20853 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.027221 B = 0.002172 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.366953 B =12886.221929 C =13602.885036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.017 3.983 3 C -0.148 4.148 4 C -0.091 4.091 5 C 0.600 3.400 6 O -0.548 6.548 7 N -0.592 5.592 8 C 0.094 3.906 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.081 4.081 12 H 0.060 0.940 13 C -0.080 4.080 14 H 0.069 0.931 15 C -0.101 4.101 16 C -0.132 4.132 17 C 0.177 3.823 18 N -0.611 5.611 19 C -0.259 4.259 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.938 5.938 23 Si 0.969 3.031 24 H -0.263 1.263 25 H -0.291 1.291 26 H -0.292 1.292 27 C 0.154 3.846 28 C 0.120 3.880 29 O 0.111 5.889 30 N -0.370 5.370 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.083 0.917 34 H 0.198 0.802 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.059 0.941 38 H 0.101 0.899 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.073 0.927 42 H 0.045 0.955 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.050 0.950 46 H -0.012 1.012 47 H 0.249 0.751 48 H 0.002 0.998 49 H 0.058 0.942 50 H 0.089 0.911 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.718 -8.993 -8.853 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.141 4.141 3 C -0.170 4.170 4 C -0.156 4.156 5 C 0.386 3.614 6 O -0.427 6.427 7 N -0.322 5.322 8 C -0.027 4.027 9 C -0.164 4.164 10 C -0.154 4.154 11 C -0.101 4.101 12 H 0.079 0.921 13 C -0.101 4.101 14 H 0.088 0.912 15 C -0.138 4.138 16 C -0.171 4.171 17 C 0.051 3.949 18 N -0.334 5.334 19 C -0.390 4.390 20 H 0.084 0.916 21 C -0.247 4.247 22 N -0.584 5.584 23 Si 0.797 3.203 24 H -0.187 1.187 25 H -0.218 1.218 26 H -0.219 1.219 27 C 0.029 3.971 28 C -0.001 4.001 29 O 0.043 5.957 30 N -0.076 5.076 31 H 0.115 0.885 32 H 0.124 0.876 33 H 0.102 0.898 34 H 0.215 0.785 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.077 0.923 38 H 0.119 0.881 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.068 0.932 46 H 0.007 0.993 47 H 0.058 0.942 48 H 0.020 0.980 49 H 0.077 0.923 50 H 0.107 0.893 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -25.796 -9.598 -8.842 28.909 hybrid contribution 1.356 0.942 0.579 1.750 sum -24.439 -8.655 -8.263 27.211 Atomic orbital electron populations 1.20420 0.82682 1.05406 1.04970 1.24213 1.00895 0.87419 1.01580 1.23210 0.89532 1.02759 1.01541 1.24082 0.97118 0.84340 1.10104 1.16842 0.81620 0.85653 0.77274 1.90855 1.86115 1.13521 1.52236 1.48137 1.05204 1.11164 1.67733 1.22363 1.02651 0.78453 0.99245 1.21886 0.94850 1.02740 0.96951 1.21641 0.97258 0.93597 1.02925 1.21376 0.94313 0.96978 0.97441 0.92128 1.21439 0.94257 0.95379 0.99021 0.91213 1.21465 0.96079 0.95330 1.00968 1.22035 0.96632 0.99733 0.98745 1.20571 0.97859 0.84206 0.92215 1.44257 1.01356 1.05532 1.82302 1.19526 0.89598 0.97539 1.32309 0.91574 1.26059 1.02881 0.97887 0.97852 1.70147 1.30368 1.14943 1.42943 0.85174 0.79686 0.78522 0.76899 1.18697 1.21828 1.21943 1.21062 0.85957 0.95827 0.94246 1.21825 0.81703 0.98208 0.98375 1.85078 1.21080 1.21835 1.67706 1.73708 0.90011 1.25461 1.18429 0.88516 0.87640 0.89773 0.78450 0.88633 0.88079 0.92262 0.88086 0.91684 0.90579 0.90820 0.93654 0.92895 0.91928 0.93170 0.99344 0.94208 0.98049 0.92331 0.89318 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.56 10.47 71.24 0.75 0.19 16 2 C 0.02 0.26 7.31 43.56 0.32 0.58 16 3 C -0.15 -2.47 10.92 22.68 0.25 -2.23 16 4 C -0.09 -1.83 6.91 24.38 0.17 -1.66 16 5 C 0.60 14.36 7.68 86.69 0.67 15.03 16 6 O -0.55 -16.49 16.34 -3.99 -0.07 -16.56 16 7 N -0.59 -12.43 2.97 -822.69 -2.45 -14.87 16 8 C 0.09 1.49 6.16 86.36 0.53 2.03 16 9 C -0.13 -2.05 6.08 30.67 0.19 -1.87 16 10 C -0.12 -2.44 4.87 30.64 0.15 -2.29 16 11 C -0.08 -2.02 1.92 -10.69 -0.02 -2.04 16 12 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 13 C -0.08 -2.54 1.92 -10.72 -0.02 -2.56 16 14 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.10 -3.31 4.86 30.62 0.15 -3.16 16 16 C -0.13 -5.10 6.08 30.67 0.19 -4.91 16 17 C 0.18 8.84 5.22 86.36 0.45 9.29 16 18 N -0.61 -31.00 2.98 -699.06 -2.08 -33.09 16 19 C -0.26 -14.28 9.56 84.03 0.80 -13.48 16 20 H 0.07 3.52 7.83 -2.91 -0.02 3.50 16 21 C -0.05 -2.91 5.14 84.86 0.44 -2.48 16 22 N -0.94 -56.45 11.02 21.65 0.24 -56.22 16 23 Si 0.97 45.04 29.56 68.60 2.03 47.07 16 24 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 27 C 0.15 6.29 5.28 86.36 0.46 6.75 16 28 C 0.12 2.72 5.20 86.36 0.45 3.17 16 29 O 0.11 2.12 7.91 65.88 0.52 2.64 16 30 N -0.37 -7.13 12.04 -48.86 -0.59 -7.72 16 31 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.10 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.20 2.56 8.06 -2.91 -0.02 2.54 16 35 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.10 1.55 4.23 -15.80 -0.07 1.49 16 37 H 0.06 1.08 8.14 -2.38 -0.02 1.06 16 38 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.06 1.54 6.50 -2.39 -0.02 1.52 16 40 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.07 2.06 6.50 -2.39 -0.02 2.04 16 42 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 43 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 44 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 45 H 0.05 2.83 6.20 -2.38 -0.01 2.82 16 46 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 47 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 48 H 0.00 0.07 8.14 -2.38 -0.02 0.05 16 49 H 0.06 2.30 6.52 -2.38 -0.02 2.28 16 50 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 51 H 0.08 2.20 5.59 -2.38 -0.01 2.19 16 Total: -1.00 -70.14 391.60 4.38 -65.76 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: 0.87 Total: 12.61 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: 5.90 Total: 0.36 kcal Atomic # 7 Polarization: -107.01 SS G_CDS: -4.88 Total: -111.89 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: 0.46 Total: -13.91 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -70.14 4.38 -65.76 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053004303.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.947 kcal (2) G-P(sol) polarization free energy of solvation -70.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds