Wall clock time and date at job start Wed Apr 1 2020 04:23:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35313 * 126.66389 * 2 1 4 4 C 1.42274 * 103.92113 * 180.02562 * 3 2 1 5 5 C 1.48332 * 126.93902 * 179.88591 * 4 3 2 6 6 O 1.21496 * 120.00174 * 5.96464 * 5 4 3 7 7 N 1.34781 * 119.99815 * 185.96793 * 5 4 3 8 8 C 1.46933 * 120.63191 * 355.11339 * 7 5 4 9 9 C 1.53187 * 108.77245 * 126.39464 * 8 7 5 10 10 C 1.53036 * 109.31667 * 54.63749 * 9 8 7 11 11 C 1.53040 * 109.53636 * 298.63500 * 10 9 8 12 12 H 1.09000 * 109.50045 * 301.40986 * 11 10 9 13 13 C 1.53006 * 109.50014 * 181.31394 * 11 10 9 14 14 H 1.08998 * 109.49417 * 299.93862 * 13 11 10 15 15 C 1.53041 * 109.49566 * 59.99672 * 13 11 10 16 16 C 1.53043 * 109.53893 * 181.31843 * 15 13 11 17 17 C 1.53198 * 109.30898 * 298.63747 * 16 15 13 18 18 N 1.46925 * 108.77477 * 54.63463 * 17 16 15 19 19 C 1.36943 * 120.62808 * 126.41408 * 18 17 16 20 20 H 1.07997 * 119.99992 * 338.07930 * 19 18 17 21 21 C 1.38809 * 119.99849 * 158.07621 * 19 18 17 22 22 N 1.31618 * 119.99877 * 154.15011 * 21 19 18 23 23 Si 1.86803 * 120.00373 * 334.15443 * 21 19 18 24 24 H 1.48496 * 109.47144 * 95.12562 * 23 21 19 25 25 H 1.48499 * 109.47235 * 215.12668 * 23 21 19 26 26 H 1.48505 * 109.46818 * 335.12738 * 23 21 19 27 27 C 1.46925 * 118.74107 * 306.38753 * 18 17 16 28 28 C 1.46926 * 120.62946 * 175.11888 * 7 5 4 29 29 N 1.30991 * 106.12341 * 359.62523 * 4 3 2 30 30 O 1.20902 * 111.43734 * 0.24033 * 29 4 3 31 31 H 1.09003 * 109.47127 * 180.32373 * 1 2 3 32 32 H 1.08991 * 109.47550 * 300.32405 * 1 2 3 33 33 H 1.09007 * 109.46631 * 60.32791 * 1 2 3 34 34 H 1.07991 * 128.04357 * 359.94286 * 3 2 1 35 35 H 1.08995 * 109.58345 * 6.60572 * 8 7 5 36 36 H 1.08994 * 109.58715 * 246.18407 * 8 7 5 37 37 H 1.09007 * 109.49990 * 294.68347 * 9 8 7 38 38 H 1.09003 * 109.49679 * 174.59151 * 9 8 7 39 39 H 1.09001 * 109.45894 * 58.65147 * 10 9 8 40 40 H 1.08999 * 109.46491 * 178.62866 * 10 9 8 41 41 H 1.08999 * 109.46310 * 301.33819 * 15 13 11 42 42 H 1.09003 * 109.45929 * 61.31034 * 15 13 11 43 43 H 1.09000 * 109.49563 * 58.58368 * 16 15 13 44 44 H 1.08994 * 109.49912 * 178.68386 * 16 15 13 45 45 H 1.08998 * 109.58212 * 174.41896 * 17 16 15 46 46 H 1.09005 * 109.58467 * 294.84376 * 17 16 15 47 47 H 0.97004 * 120.00282 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58468 * 293.82679 * 27 18 17 49 49 H 1.09000 * 109.58689 * 173.40235 * 27 18 17 50 50 H 1.09000 * 109.58559 * 113.81938 * 28 7 5 51 51 H 1.09000 * 109.58548 * 353.39049 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9076 1.2842 -0.0032 6 8 4.9039 2.4944 0.1042 7 7 6.0752 0.6220 -0.1249 8 6 6.1039 -0.8469 -0.1484 9 6 6.8582 -1.3052 -1.4004 10 6 8.2406 -0.6491 -1.4271 11 6 8.0839 0.8721 -1.4874 12 1 7.5136 1.1442 -2.3755 13 6 9.4660 1.5259 -1.5471 14 1 10.0350 1.2555 -0.6576 15 6 10.2073 1.0401 -2.7948 16 6 11.6023 1.6680 -2.8382 17 6 11.4696 3.1922 -2.9173 18 7 10.6350 3.6528 -1.7993 19 6 11.0843 4.6274 -0.9486 20 1 12.1435 4.8167 -0.8556 21 6 10.1783 5.3720 -0.2060 22 7 10.5512 5.9169 0.9326 23 14 8.4297 5.6006 -0.8223 24 1 7.5493 4.5766 -0.2046 25 1 7.9478 6.9557 -0.4528 26 1 8.4022 5.4511 -2.2996 27 6 9.3091 3.0483 -1.6115 28 6 7.3435 1.3552 -0.2364 29 7 3.4761 -0.7658 0.0073 30 8 2.3073 -1.0750 0.0078 31 1 -0.3633 -1.0277 0.0058 32 1 -0.3634 0.5188 0.8870 33 1 -0.3633 0.5088 -0.8930 34 1 2.0302 2.1271 -0.0008 35 1 5.0845 -1.2318 -0.1745 36 1 6.6136 -1.2166 0.7412 37 1 6.2994 -1.0126 -2.2894 38 1 6.9704 -2.3893 -1.3811 39 1 8.7896 -0.9222 -0.5259 40 1 8.7887 -0.9925 -2.3044 41 1 10.2986 -0.0456 -2.7633 42 1 9.6500 1.3320 -3.6850 43 1 12.1515 1.3969 -1.9365 44 1 12.1382 1.3035 -3.7146 45 1 12.4569 3.6489 -2.8487 46 1 11.0011 3.4696 -3.8616 47 1 9.9180 6.4370 1.4518 48 1 8.6645 3.3141 -2.4494 49 1 8.8709 3.4102 -0.6815 50 1 7.9544 1.1650 0.6461 51 1 7.1420 2.4231 -0.3206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053004842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:32 Heat of formation + Delta-G solvation = 56.499073 kcal Electronic energy + Delta-G solvation = -32130.181797 eV Core-core repulsion = 28033.785000 eV Total energy + Delta-G solvation = -4096.396796 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.37678 -40.31802 -38.55642 -36.93915 -34.53506 -34.22885 -33.42427 -32.45788 -31.96000 -30.60805 -28.77241 -28.19782 -26.44777 -25.20332 -24.25755 -23.59836 -22.82194 -21.96817 -21.44604 -19.97373 -19.42558 -19.11970 -18.13778 -17.66598 -17.08785 -16.66016 -16.00511 -15.29001 -15.24827 -14.67657 -14.62526 -14.20159 -14.12825 -13.90728 -13.77268 -13.73335 -13.61817 -13.49131 -13.21637 -12.95044 -12.86622 -12.71521 -12.57281 -12.22045 -11.96553 -11.84575 -11.41558 -11.29600 -10.95935 -10.72267 -10.68899 -10.53931 -10.50579 -10.38982 -10.31482 -10.06565 -10.00991 -9.76801 -9.72485 -9.52950 -9.27456 -8.67128 -8.49200 -6.96454 -5.89145 -3.17308 0.82697 1.39389 2.51761 2.77882 3.03532 3.46339 3.61447 3.61610 3.65394 4.10800 4.56722 4.59406 4.63050 4.76914 4.81298 4.84780 4.90407 4.93307 5.02368 5.04855 5.14705 5.29186 5.33824 5.37907 5.47035 5.50688 5.54060 5.61419 5.66307 5.69192 5.83342 5.83682 5.87799 5.99017 6.03875 6.08726 6.16611 6.20458 6.30073 6.35524 6.36974 6.44788 6.54335 6.66140 6.70393 6.78385 6.81116 7.06327 7.23857 7.70362 7.98483 8.00788 8.37250 9.00911 9.80363 10.17053 11.26156 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.003363 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.937826 B = 8323.152287 C = 9883.307667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.029 4.029 3 C -0.185 4.185 4 C -0.009 4.009 5 C 0.589 3.411 6 O -0.516 6.516 7 N -0.593 5.593 8 C 0.075 3.925 9 C -0.130 4.130 10 C -0.116 4.116 11 C -0.093 4.093 12 H 0.071 0.929 13 C -0.096 4.096 14 H 0.076 0.924 15 C -0.103 4.103 16 C -0.135 4.135 17 C 0.147 3.853 18 N -0.605 5.605 19 C -0.260 4.260 20 H 0.087 0.913 21 C 0.024 3.976 22 N -0.903 5.903 23 Si 0.867 3.133 24 H -0.279 1.279 25 H -0.303 1.303 26 H -0.273 1.273 27 C 0.132 3.868 28 C 0.110 3.890 29 N -0.331 5.331 30 O 0.108 5.892 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.093 0.907 34 H 0.181 0.819 35 H 0.125 0.875 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.074 0.926 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.061 0.939 46 H 0.020 0.980 47 H 0.262 0.738 48 H 0.022 0.978 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.574 -18.856 -4.214 26.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.093 4.093 3 C -0.208 4.208 4 C -0.168 4.168 5 C 0.374 3.626 6 O -0.389 6.389 7 N -0.326 5.326 8 C -0.048 4.048 9 C -0.169 4.169 10 C -0.154 4.154 11 C -0.113 4.113 12 H 0.089 0.911 13 C -0.117 4.117 14 H 0.094 0.906 15 C -0.141 4.141 16 C -0.174 4.174 17 C 0.021 3.979 18 N -0.328 5.328 19 C -0.388 4.388 20 H 0.104 0.896 21 C -0.175 4.175 22 N -0.546 5.546 23 Si 0.697 3.303 24 H -0.207 1.207 25 H -0.232 1.232 26 H -0.199 1.199 27 C 0.007 3.993 28 C -0.012 4.012 29 N -0.038 5.038 30 O 0.039 5.961 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.199 0.801 35 H 0.141 0.859 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.084 0.916 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.072 0.928 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.038 0.962 47 H 0.072 0.928 48 H 0.040 0.960 49 H 0.092 0.908 50 H 0.094 0.906 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -16.692 -19.042 -3.996 25.636 hybrid contribution -1.263 0.958 -0.265 1.607 sum -17.955 -18.085 -4.262 25.838 Atomic orbital electron populations 1.20392 0.83373 1.04894 1.04502 1.24480 0.96470 0.85381 1.02934 1.22456 0.89686 1.01724 1.06916 1.23591 0.96838 0.89961 1.06360 1.17050 0.81521 0.86278 0.77770 1.90865 1.86104 1.12726 1.49244 1.48002 1.06172 1.07610 1.70767 1.22612 1.04783 0.78916 0.98497 1.21885 0.96784 1.00319 0.97871 1.21660 0.96262 0.94829 1.02617 1.21536 0.97010 0.95082 0.97667 0.91088 1.21672 0.93471 0.97629 0.98935 0.90601 1.21471 0.96382 0.98778 0.97445 1.22004 0.96298 0.98313 1.00824 1.20920 0.95262 0.91803 0.89866 1.44367 1.15215 1.42506 1.30721 1.18911 0.93487 1.10463 1.15936 0.89576 1.25114 0.97428 0.98364 0.96595 1.69901 1.35787 1.37362 1.11554 0.87211 0.86548 0.76619 0.79914 1.20685 1.23171 1.19859 1.21372 0.87943 0.90346 0.99667 1.21989 0.82494 0.98274 0.98403 1.73824 0.96653 1.15339 1.17937 1.84788 1.11452 1.33806 1.66057 0.89633 0.88838 0.88858 0.80149 0.85859 0.91271 0.91847 0.90745 0.91609 0.91076 0.92815 0.92833 0.91995 0.92888 0.92091 0.96239 0.92845 0.96038 0.90820 0.90621 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.25 10.45 36.01 0.38 0.12 16 2 C -0.03 -0.24 7.47 -35.35 -0.26 -0.50 16 3 C -0.19 -1.98 10.93 -39.07 -0.43 -2.41 16 4 C -0.01 -0.12 6.95 -82.52 -0.57 -0.69 16 5 C 0.59 9.97 7.72 -12.10 -0.09 9.88 16 6 O -0.52 -10.68 16.39 5.37 0.09 -10.59 16 7 N -0.59 -9.24 2.97 -173.70 -0.52 -9.75 16 8 C 0.07 0.91 6.33 -3.71 -0.02 0.89 16 9 C -0.13 -1.41 6.08 -26.62 -0.16 -1.58 16 10 C -0.12 -1.40 4.85 -26.69 -0.13 -1.53 16 11 C -0.09 -1.43 1.92 -90.50 -0.17 -1.61 16 12 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 13 C -0.10 -1.70 1.92 -90.50 -0.17 -1.88 16 14 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 15 C -0.10 -1.60 4.85 -26.69 -0.13 -1.73 16 16 C -0.14 -2.23 6.08 -26.61 -0.16 -2.40 16 17 C 0.15 2.98 6.52 -3.71 -0.02 2.96 16 18 N -0.61 -14.83 2.83 -172.32 -0.49 -15.32 16 19 C -0.26 -7.47 10.05 -15.06 -0.15 -7.62 16 20 H 0.09 2.61 8.02 -52.49 -0.42 2.19 16 21 C 0.02 0.71 5.18 -17.43 -0.09 0.62 16 22 N -0.90 -28.48 13.97 55.49 0.78 -27.71 16 23 Si 0.87 23.63 24.40 -169.99 -4.15 19.48 16 24 H -0.28 -7.53 5.88 56.52 0.33 -7.20 16 25 H -0.30 -8.44 7.11 56.52 0.40 -8.04 16 26 H -0.27 -7.37 6.72 56.52 0.38 -6.99 16 27 C 0.13 2.99 3.02 -3.71 -0.01 2.98 16 28 C 0.11 1.90 5.19 -3.71 -0.02 1.88 16 29 N -0.33 -3.95 8.51 33.30 0.28 -3.66 16 30 O 0.11 1.06 11.18 17.23 0.19 1.25 16 31 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.09 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.09 0.21 8.14 -51.92 -0.42 -0.21 16 34 H 0.18 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.12 1.47 3.75 -74.30 -0.28 1.19 16 36 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.79 6.33 -51.93 -0.33 0.47 16 41 H 0.05 0.71 6.33 -51.93 -0.33 0.38 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.06 1.22 7.90 -51.93 -0.41 0.81 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 47 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 48 H 0.02 0.50 7.27 -51.93 -0.38 0.12 16 49 H 0.07 1.85 2.96 -51.93 -0.15 1.69 16 50 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 51 H 0.10 2.12 5.05 -51.93 -0.26 1.85 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -34.92 383.46 -8.40 -43.32 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -8.13 Total: -0.17 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: -2.23 Total: -2.62 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 0.05 Total: -56.44 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.28 Total: -9.35 kcal Atomic # 14 Polarization: 23.63 SS G_CDS: -4.15 Total: 19.48 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.92 -8.40 -43.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053004842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.819 kcal (2) G-P(sol) polarization free energy of solvation -34.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds