Wall clock time and date at job start Wed Apr 1 2020 04:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35313 * 126.66389 * 2 1 4 4 C 1.42274 * 103.92113 * 180.02562 * 3 2 1 5 5 C 1.48332 * 126.93902 * 179.88591 * 4 3 2 6 6 O 1.21496 * 120.00174 * 5.96464 * 5 4 3 7 7 N 1.34781 * 119.99815 * 185.96793 * 5 4 3 8 8 C 1.46933 * 120.63191 * 355.11339 * 7 5 4 9 9 C 1.53187 * 108.77245 * 126.39464 * 8 7 5 10 10 C 1.53036 * 109.31667 * 54.63749 * 9 8 7 11 11 C 1.53040 * 109.53636 * 298.63500 * 10 9 8 12 12 H 1.09000 * 109.50045 * 301.40986 * 11 10 9 13 13 C 1.53006 * 109.50014 * 181.31394 * 11 10 9 14 14 H 1.08998 * 109.49417 * 299.93862 * 13 11 10 15 15 C 1.53041 * 109.49566 * 59.99672 * 13 11 10 16 16 C 1.53043 * 109.53893 * 181.31843 * 15 13 11 17 17 C 1.53198 * 109.30898 * 298.63747 * 16 15 13 18 18 N 1.46925 * 108.77477 * 54.63463 * 17 16 15 19 19 C 1.36943 * 120.62808 * 126.41408 * 18 17 16 20 20 H 1.07997 * 119.99992 * 338.07930 * 19 18 17 21 21 C 1.38809 * 119.99849 * 158.07621 * 19 18 17 22 22 N 1.31618 * 119.99877 * 154.15011 * 21 19 18 23 23 Si 1.86803 * 120.00373 * 334.15443 * 21 19 18 24 24 H 1.48496 * 109.47144 * 95.12562 * 23 21 19 25 25 H 1.48499 * 109.47235 * 215.12668 * 23 21 19 26 26 H 1.48505 * 109.46818 * 335.12738 * 23 21 19 27 27 C 1.46925 * 118.74107 * 306.38753 * 18 17 16 28 28 C 1.46926 * 120.62946 * 175.11888 * 7 5 4 29 29 N 1.30991 * 106.12341 * 359.62523 * 4 3 2 30 30 O 1.20902 * 111.43734 * 0.24033 * 29 4 3 31 31 H 1.09003 * 109.47127 * 180.32373 * 1 2 3 32 32 H 1.08991 * 109.47550 * 300.32405 * 1 2 3 33 33 H 1.09007 * 109.46631 * 60.32791 * 1 2 3 34 34 H 1.07991 * 128.04357 * 359.94286 * 3 2 1 35 35 H 1.08995 * 109.58345 * 6.60572 * 8 7 5 36 36 H 1.08994 * 109.58715 * 246.18407 * 8 7 5 37 37 H 1.09007 * 109.49990 * 294.68347 * 9 8 7 38 38 H 1.09003 * 109.49679 * 174.59151 * 9 8 7 39 39 H 1.09001 * 109.45894 * 58.65147 * 10 9 8 40 40 H 1.08999 * 109.46491 * 178.62866 * 10 9 8 41 41 H 1.08999 * 109.46310 * 301.33819 * 15 13 11 42 42 H 1.09003 * 109.45929 * 61.31034 * 15 13 11 43 43 H 1.09000 * 109.49563 * 58.58368 * 16 15 13 44 44 H 1.08994 * 109.49912 * 178.68386 * 16 15 13 45 45 H 1.08998 * 109.58212 * 174.41896 * 17 16 15 46 46 H 1.09005 * 109.58467 * 294.84376 * 17 16 15 47 47 H 0.97004 * 120.00282 * 180.02562 * 22 21 19 48 48 H 1.09002 * 109.58468 * 293.82679 * 27 18 17 49 49 H 1.09000 * 109.58689 * 173.40235 * 27 18 17 50 50 H 1.09000 * 109.58559 * 113.81938 * 28 7 5 51 51 H 1.09000 * 109.58548 * 353.39049 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5354 -0.0006 5 6 4.9076 1.2842 -0.0032 6 8 4.9039 2.4944 0.1042 7 7 6.0752 0.6220 -0.1249 8 6 6.1039 -0.8469 -0.1484 9 6 6.8582 -1.3052 -1.4004 10 6 8.2406 -0.6491 -1.4271 11 6 8.0839 0.8721 -1.4874 12 1 7.5136 1.1442 -2.3755 13 6 9.4660 1.5259 -1.5471 14 1 10.0350 1.2555 -0.6576 15 6 10.2073 1.0401 -2.7948 16 6 11.6023 1.6680 -2.8382 17 6 11.4696 3.1922 -2.9173 18 7 10.6350 3.6528 -1.7993 19 6 11.0843 4.6274 -0.9486 20 1 12.1435 4.8167 -0.8556 21 6 10.1783 5.3720 -0.2060 22 7 10.5512 5.9169 0.9326 23 14 8.4297 5.6006 -0.8223 24 1 7.5493 4.5766 -0.2046 25 1 7.9478 6.9557 -0.4528 26 1 8.4022 5.4511 -2.2996 27 6 9.3091 3.0483 -1.6115 28 6 7.3435 1.3552 -0.2364 29 7 3.4761 -0.7658 0.0073 30 8 2.3073 -1.0750 0.0078 31 1 -0.3633 -1.0277 0.0058 32 1 -0.3634 0.5188 0.8870 33 1 -0.3633 0.5088 -0.8930 34 1 2.0302 2.1271 -0.0008 35 1 5.0845 -1.2318 -0.1745 36 1 6.6136 -1.2166 0.7412 37 1 6.2994 -1.0126 -2.2894 38 1 6.9704 -2.3893 -1.3811 39 1 8.7896 -0.9222 -0.5259 40 1 8.7887 -0.9925 -2.3044 41 1 10.2986 -0.0456 -2.7633 42 1 9.6500 1.3320 -3.6850 43 1 12.1515 1.3969 -1.9365 44 1 12.1382 1.3035 -3.7146 45 1 12.4569 3.6489 -2.8487 46 1 11.0011 3.4696 -3.8616 47 1 9.9180 6.4370 1.4518 48 1 8.6645 3.3141 -2.4494 49 1 8.8709 3.4102 -0.6815 50 1 7.9544 1.1650 0.6461 51 1 7.1420 2.4231 -0.3206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053004842.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:30 Heat of formation + Delta-G solvation = 33.863164 kcal Electronic energy + Delta-G solvation = -32131.163363 eV Core-core repulsion = 28033.785000 eV Total energy + Delta-G solvation = -4097.378363 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -46.24505 -41.57944 -40.02507 -38.35119 -35.80312 -35.22770 -34.62076 -33.94540 -33.13147 -32.52008 -30.12945 -28.78900 -27.75688 -26.95228 -25.44735 -24.94089 -23.90683 -23.42300 -22.66974 -21.28406 -20.90814 -20.23567 -18.99909 -18.85490 -18.60309 -18.05779 -17.48125 -17.02287 -16.51650 -16.16292 -15.70429 -15.59256 -15.33242 -15.23076 -15.09725 -14.86947 -14.56944 -14.44070 -14.41092 -14.26784 -13.99797 -13.96099 -13.86413 -13.71498 -13.50405 -13.07994 -12.74259 -12.66855 -12.44169 -12.28400 -12.05679 -12.03866 -11.77825 -11.70606 -11.66646 -11.64035 -11.50132 -11.32291 -11.11586 -11.00917 -10.66293 -10.46233 -9.90306 -9.03332 -8.24782 -5.45848 -0.11062 0.58276 1.23194 1.31237 1.36021 1.48875 1.84272 1.96312 2.32329 2.64143 2.94004 3.30235 3.32318 3.58734 3.64256 3.74687 3.82378 3.92752 3.98940 4.10724 4.13206 4.17684 4.24531 4.25572 4.33434 4.47055 4.51565 4.57732 4.66347 4.69980 4.73789 4.75759 4.76014 4.78784 4.87426 4.93054 4.95934 4.96033 5.03753 5.09949 5.11780 5.22908 5.25089 5.27540 5.33998 5.39644 5.42805 5.61178 5.79657 6.03424 6.05386 6.65563 6.86288 6.96632 7.59727 7.99355 8.94366 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013478 B = 0.003363 C = 0.002832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2076.937826 B = 8323.152287 C = 9883.307667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.001 3.999 3 C -0.209 4.209 4 C -0.037 4.037 5 C 0.580 3.420 6 O -0.571 6.571 7 N -0.591 5.591 8 C 0.069 3.931 9 C -0.123 4.123 10 C -0.109 4.109 11 C -0.082 4.082 12 H 0.065 0.935 13 C -0.086 4.086 14 H 0.065 0.935 15 C -0.098 4.098 16 C -0.126 4.126 17 C 0.137 3.863 18 N -0.621 5.621 19 C -0.239 4.239 20 H 0.064 0.936 21 C -0.026 4.026 22 N -0.946 5.946 23 Si 0.923 3.077 24 H -0.287 1.287 25 H -0.312 1.312 26 H -0.269 1.269 27 C 0.130 3.870 28 C 0.110 3.890 29 N -0.334 5.334 30 O 0.123 5.877 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.110 0.890 34 H 0.184 0.816 35 H 0.131 0.869 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.092 0.908 42 H 0.060 0.940 43 H 0.053 0.947 44 H 0.091 0.909 45 H 0.055 0.945 46 H 0.030 0.970 47 H 0.260 0.740 48 H 0.015 0.985 49 H 0.041 0.959 50 H 0.071 0.929 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.260 -23.234 -6.255 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.063 4.063 3 C -0.232 4.232 4 C -0.194 4.194 5 C 0.367 3.633 6 O -0.449 6.449 7 N -0.323 5.323 8 C -0.053 4.053 9 C -0.161 4.161 10 C -0.146 4.146 11 C -0.102 4.102 12 H 0.084 0.916 13 C -0.107 4.107 14 H 0.084 0.916 15 C -0.135 4.135 16 C -0.165 4.165 17 C 0.013 3.987 18 N -0.345 5.345 19 C -0.369 4.369 20 H 0.082 0.918 21 C -0.221 4.221 22 N -0.593 5.593 23 Si 0.754 3.246 24 H -0.215 1.215 25 H -0.241 1.241 26 H -0.194 1.194 27 C 0.005 3.995 28 C -0.012 4.012 29 N -0.038 5.038 30 O 0.050 5.950 31 H 0.125 0.875 32 H 0.128 0.872 33 H 0.129 0.871 34 H 0.201 0.799 35 H 0.148 0.852 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.072 0.928 44 H 0.109 0.891 45 H 0.074 0.926 46 H 0.048 0.952 47 H 0.069 0.931 48 H 0.033 0.967 49 H 0.059 0.941 50 H 0.089 0.911 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.353 -23.493 -6.091 30.428 hybrid contribution -0.768 2.263 0.360 2.417 sum -19.121 -21.230 -5.731 29.141 Atomic orbital electron populations 1.20709 0.79537 1.06798 1.06042 1.25182 0.97957 0.83571 0.99555 1.22633 0.89084 1.02885 1.08586 1.23264 0.96153 0.90846 1.09141 1.17580 0.82920 0.85996 0.76799 1.90819 1.87079 1.15106 1.51907 1.48141 1.05203 1.09075 1.69864 1.22902 1.05849 0.76470 1.00034 1.21875 0.95451 1.02143 0.96587 1.21643 0.97521 0.91438 1.04007 1.21444 0.94960 0.97799 0.96031 0.91627 1.21515 0.95194 0.93815 1.00168 0.91636 1.21488 0.95157 1.00947 0.95908 1.21912 0.97401 0.94948 1.02197 1.21203 0.94201 0.94784 0.88540 1.44584 1.16312 1.41952 1.31650 1.18945 0.92448 1.10242 1.15252 0.91840 1.25540 1.00054 0.99430 0.97091 1.69982 1.36795 1.39566 1.12953 0.86310 0.83424 0.75477 0.79382 1.21531 1.24119 1.19369 1.21344 0.86612 0.93927 0.97615 1.21799 0.83688 0.96165 0.99560 1.73757 0.97808 1.14274 1.17934 1.84760 1.10994 1.34236 1.65006 0.87544 0.87199 0.87119 0.79861 0.85223 0.90272 0.92183 0.87301 0.90967 0.88761 0.88919 0.92166 0.92848 0.89078 0.92636 0.95189 0.93128 0.96737 0.94074 0.91059 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.22 10.45 71.24 0.74 0.53 16 2 C 0.00 0.01 7.47 25.01 0.19 0.20 16 3 C -0.21 -4.39 10.93 22.60 0.25 -4.14 16 4 C -0.04 -1.02 6.95 42.96 0.30 -0.72 16 5 C 0.58 20.69 7.72 86.93 0.67 21.36 16 6 O -0.57 -25.63 16.39 -3.70 -0.06 -25.69 16 7 N -0.59 -18.83 2.97 -821.76 -2.44 -21.28 16 8 C 0.07 1.56 6.33 86.36 0.55 2.11 16 9 C -0.12 -2.22 6.08 30.67 0.19 -2.04 16 10 C -0.11 -2.23 4.85 30.62 0.15 -2.08 16 11 C -0.08 -2.46 1.92 -10.71 -0.02 -2.48 16 12 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 13 C -0.09 -2.96 1.92 -10.72 -0.02 -2.98 16 14 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 15 C -0.10 -2.66 4.85 30.62 0.15 -2.51 16 16 C -0.13 -3.74 6.08 30.68 0.19 -3.56 16 17 C 0.14 5.37 6.52 86.36 0.56 5.93 16 18 N -0.62 -30.79 2.83 -699.09 -1.98 -32.77 16 19 C -0.24 -14.21 10.05 84.03 0.84 -13.36 16 20 H 0.06 4.00 8.02 -2.91 -0.02 3.98 16 21 C -0.03 -1.63 5.18 84.86 0.44 -1.19 16 22 N -0.95 -62.56 13.97 21.65 0.30 -62.26 16 23 Si 0.92 52.13 24.40 68.60 1.67 53.80 16 24 H -0.29 -16.49 5.88 99.48 0.59 -15.90 16 25 H -0.31 -17.83 7.11 99.48 0.71 -17.13 16 26 H -0.27 -14.70 6.72 99.48 0.67 -14.03 16 27 C 0.13 5.98 3.02 86.36 0.26 6.24 16 28 C 0.11 3.98 5.19 86.36 0.45 4.42 16 29 N -0.33 -7.50 8.51 -49.51 -0.42 -7.93 16 30 O 0.12 2.09 11.18 71.85 0.80 2.90 16 31 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 33 H 0.11 0.06 8.14 -2.38 -0.02 0.05 16 34 H 0.18 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.13 2.86 3.75 -46.55 -0.17 2.68 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 38 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 40 H 0.09 1.57 6.33 -2.39 -0.02 1.55 16 41 H 0.09 1.90 6.33 -2.39 -0.02 1.88 16 42 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 45 H 0.06 2.20 7.90 -2.39 -0.02 2.18 16 46 H 0.03 1.13 8.14 -2.38 -0.02 1.11 16 47 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 48 H 0.01 0.69 7.27 -2.39 -0.02 0.67 16 49 H 0.04 2.17 2.96 -2.39 -0.01 2.16 16 50 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 51 H 0.05 2.47 5.05 -2.39 -0.01 2.46 16 Total: -1.00 -83.10 383.46 4.37 -78.73 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.61 Total: 8.76 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: 5.88 Total: 5.72 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -4.54 Total: -124.23 kcal Atomic # 8 Polarization: -23.53 SS G_CDS: 0.74 Total: -22.79 kcal Atomic # 14 Polarization: 52.13 SS G_CDS: 1.67 Total: 53.80 kcal Total: -83.10 4.37 -78.73 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053004842.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.597 kcal (2) G-P(sol) polarization free energy of solvation -83.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds