Wall clock time and date at job start Wed Apr 1 2020 05:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30008 * 127.33644 * 2 1 4 4 O 1.20663 * 112.30484 * 180.26348 * 3 2 1 5 5 C 1.33485 * 113.15242 * 359.97438 * 4 3 2 6 6 C 1.37359 * 106.34606 * 0.02562 * 5 4 3 7 7 C 1.47398 * 128.56737 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99836 * 218.07459 * 7 6 5 9 9 N 1.34781 * 119.99974 * 38.06953 * 7 6 5 10 10 C 1.46922 * 120.62834 * 4.55524 * 9 7 6 11 11 C 1.53629 * 108.54127 * 126.37025 * 10 9 7 12 12 C 1.53032 * 109.24275 * 54.85354 * 11 10 9 13 13 C 1.53042 * 109.54044 * 298.51026 * 12 11 10 14 14 H 1.08996 * 109.52051 * 301.40400 * 13 12 11 15 15 C 1.53003 * 109.49757 * 181.31537 * 13 12 11 16 16 H 1.08997 * 109.49694 * 300.16513 * 15 13 12 17 17 C 1.53045 * 109.49502 * 60.23136 * 15 13 12 18 18 C 1.53042 * 109.53320 * 181.31561 * 17 15 13 19 19 C 1.53185 * 109.31185 * 298.62967 * 18 17 15 20 20 N 1.46931 * 108.77751 * 54.64002 * 19 18 17 21 21 C 1.36932 * 120.63234 * 126.38638 * 20 19 18 22 22 H 1.07994 * 119.99885 * 331.28644 * 21 20 19 23 23 C 1.38813 * 119.99867 * 151.27903 * 21 20 19 24 24 N 1.31617 * 119.99981 * 158.00255 * 23 21 20 25 25 Si 1.86796 * 120.00233 * 338.00267 * 23 21 20 26 26 H 1.48508 * 109.47213 * 89.63979 * 25 23 21 27 27 H 1.48498 * 109.47524 * 209.64010 * 25 23 21 28 28 H 1.48500 * 109.47394 * 329.64184 * 25 23 21 29 29 C 1.46936 * 118.76038 * 306.41020 * 20 19 18 30 30 C 1.46929 * 120.63009 * 184.83425 * 9 7 6 31 31 H 1.09003 * 109.46676 * 269.67938 * 1 2 3 32 32 H 1.09001 * 109.46939 * 29.68205 * 1 2 3 33 33 H 1.09004 * 109.46768 * 149.68003 * 1 2 3 34 34 H 1.08001 * 126.82900 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.58526 * 246.19928 * 10 9 7 36 36 H 1.09002 * 109.59112 * 6.62572 * 10 9 7 37 37 H 1.09001 * 109.63230 * 294.85934 * 11 10 9 38 38 H 1.09004 * 109.45656 * 174.74121 * 11 10 9 39 39 H 1.08999 * 109.46035 * 178.48982 * 12 11 10 40 40 H 1.09000 * 109.46331 * 58.53511 * 12 11 10 41 41 H 1.08999 * 109.45763 * 301.33412 * 17 15 13 42 42 H 1.09002 * 109.45940 * 61.30578 * 17 15 13 43 43 H 1.08999 * 109.49919 * 58.58561 * 18 17 15 44 44 H 1.09003 * 109.49130 * 178.64852 * 18 17 15 45 45 H 1.08994 * 109.58897 * 174.42807 * 19 18 17 46 46 H 1.09006 * 109.58937 * 294.70673 * 19 18 17 47 47 H 0.96993 * 120.00431 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.56459 * 293.78207 * 29 20 19 49 49 H 1.09005 * 109.61569 * 173.35605 * 29 20 19 50 50 H 1.09001 * 109.58767 * 353.37531 * 30 9 7 51 51 H 1.09000 * 109.58662 * 113.65466 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4609 0.7207 -0.0051 5 6 3.6494 -0.6007 -0.0090 6 6 2.3992 -1.1696 -0.0062 7 6 2.0401 -2.5992 -0.0090 8 8 1.0856 -2.9851 -0.6562 9 7 2.7697 -3.4787 0.7057 10 6 3.8635 -3.0157 1.5705 11 6 3.6385 -3.5741 2.9839 12 6 3.4986 -5.0961 2.9086 13 6 2.2842 -5.4566 2.0498 14 1 1.3879 -5.0109 2.4811 15 6 2.1260 -6.9777 2.0020 16 1 3.0228 -7.4234 1.5718 17 6 1.9186 -7.5144 3.4201 18 6 1.7930 -9.0391 3.3769 19 6 0.5746 -9.4233 2.5316 20 7 0.6964 -8.7903 1.2113 21 6 0.6113 -9.5391 0.0680 22 1 0.9130 -10.5760 0.0780 23 6 0.1371 -8.9654 -1.1037 24 7 0.4426 -9.4982 -2.2678 25 14 -0.9345 -7.4373 -1.0284 26 1 -0.0746 -6.2272 -1.0682 27 1 -1.8609 -7.4245 -2.1890 28 1 -1.7200 -7.4451 0.2318 29 6 0.9118 -7.3385 1.1404 30 6 2.4902 -4.9192 0.6301 31 1 -0.3633 -0.0058 1.0277 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3633 -0.8871 -0.5188 34 1 4.5967 -1.1195 -0.0141 35 1 4.8154 -3.3753 1.1798 36 1 3.8676 -1.9261 1.6029 37 1 2.7298 -3.1456 3.4067 38 1 4.4893 -3.3177 3.6153 39 1 3.3657 -5.4988 3.9127 40 1 4.3977 -5.5219 2.4630 41 1 2.7704 -7.2377 4.0413 42 1 1.0083 -7.0870 3.8407 43 1 2.6926 -9.4659 2.9336 44 1 1.6693 -9.4227 4.3897 45 1 0.5372 -10.5064 2.4155 46 1 -0.3349 -9.0770 3.0228 47 1 0.1116 -9.0972 -3.0866 48 1 0.0298 -6.8199 1.5163 49 1 1.0973 -7.0461 0.1068 50 1 1.5879 -5.0860 0.0418 51 1 3.3313 -5.4305 0.1620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053043128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:18 Heat of formation + Delta-G solvation = 43.261781 kcal Electronic energy + Delta-G solvation = -32319.799335 eV Core-core repulsion = 28222.828527 eV Total energy + Delta-G solvation = -4096.970808 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.21611 -40.39431 -38.56632 -36.96143 -34.79663 -34.15882 -32.80724 -32.17389 -31.94744 -30.64157 -29.11128 -28.56181 -26.44757 -25.20707 -24.20925 -23.70939 -22.08029 -21.76695 -21.44130 -20.24381 -19.63214 -19.31453 -18.08906 -17.74925 -17.04641 -16.69103 -16.23976 -15.43168 -15.30481 -14.79824 -14.59467 -14.37845 -14.09278 -13.80399 -13.61651 -13.58352 -13.53247 -13.35101 -13.06374 -12.99308 -12.85403 -12.75406 -12.62649 -12.23955 -12.00463 -11.63177 -11.54653 -11.43327 -11.08932 -10.93104 -10.62527 -10.56555 -10.47613 -10.35704 -10.20137 -10.16922 -10.05932 -9.86066 -9.77698 -9.52570 -9.38301 -8.74687 -8.50936 -6.90387 -5.92230 -3.27421 0.83383 1.53159 2.46707 2.76938 2.97677 3.43532 3.58598 3.59280 3.76271 4.00399 4.35133 4.48502 4.59214 4.60901 4.70118 4.76727 4.87035 4.96714 5.02530 5.11808 5.22902 5.26517 5.30653 5.34471 5.42547 5.43632 5.44850 5.48442 5.60319 5.62867 5.73759 5.79390 5.87839 5.89977 5.95997 6.02173 6.12910 6.17055 6.25719 6.28703 6.33823 6.42108 6.46113 6.62840 6.70683 6.76766 6.78398 7.03055 7.19993 7.88756 7.98780 8.02323 8.37127 8.99495 9.76861 10.15919 11.23582 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003578 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.031436 B = 7824.643654 C = 9281.810545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.067 3.933 3 N -0.359 5.359 4 O 0.097 5.903 5 C -0.015 4.015 6 C -0.242 4.242 7 C 0.590 3.410 8 O -0.518 6.518 9 N -0.602 5.602 10 C 0.095 3.905 11 C -0.133 4.133 12 C -0.116 4.116 13 C -0.093 4.093 14 H 0.071 0.929 15 C -0.096 4.096 16 H 0.075 0.925 17 C -0.103 4.103 18 C -0.135 4.135 19 C 0.146 3.854 20 N -0.605 5.605 21 C -0.262 4.262 22 H 0.084 0.916 23 C 0.028 3.972 24 N -0.906 5.906 25 Si 0.872 3.128 26 H -0.278 1.278 27 H -0.303 1.303 28 H -0.274 1.274 29 C 0.133 3.867 30 C 0.112 3.888 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.227 0.773 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.053 0.947 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.060 0.940 46 H 0.019 0.981 47 H 0.262 0.738 48 H 0.020 0.980 49 H 0.074 0.926 50 H 0.101 0.899 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.866 17.465 11.724 23.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.096 4.096 3 N -0.066 5.066 4 O 0.037 5.963 5 C -0.097 4.097 6 C -0.249 4.249 7 C 0.377 3.623 8 O -0.394 6.394 9 N -0.336 5.336 10 C -0.027 4.027 11 C -0.171 4.171 12 C -0.153 4.153 13 C -0.113 4.113 14 H 0.090 0.910 15 C -0.117 4.117 16 H 0.093 0.907 17 C -0.141 4.141 18 C -0.174 4.174 19 C 0.020 3.980 20 N -0.328 5.328 21 C -0.391 4.391 22 H 0.101 0.899 23 C -0.171 4.171 24 N -0.549 5.549 25 Si 0.702 3.298 26 H -0.205 1.205 27 H -0.231 1.231 28 H -0.200 1.200 29 C 0.008 3.992 30 C -0.009 4.009 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.115 0.885 34 H 0.243 0.757 35 H 0.093 0.907 36 H 0.101 0.899 37 H 0.085 0.915 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.072 0.928 43 H 0.079 0.921 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.072 0.928 48 H 0.038 0.962 49 H 0.092 0.908 50 H 0.119 0.881 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.126 18.530 11.170 23.482 hybrid contribution -0.541 -0.006 -0.068 0.545 sum 8.586 18.524 11.101 23.240 Atomic orbital electron populations 1.20314 0.84936 1.04896 1.03863 1.24855 0.98935 0.86222 0.99553 1.73664 0.89246 1.23509 1.20199 1.84568 1.21548 1.22990 1.67232 1.26466 1.00192 0.83865 0.99182 1.22359 0.93070 0.95715 1.13789 1.16940 0.82521 0.83128 0.79733 1.90872 1.27270 1.78769 1.42445 1.47989 1.33768 1.07545 1.44248 1.22125 0.89935 0.99834 0.90847 1.21984 1.02433 0.97025 0.95670 1.21643 0.98443 0.94482 1.00752 1.21532 0.98428 0.96715 0.94645 0.91018 1.21677 1.01201 0.91911 0.96933 0.90666 1.21471 1.00454 0.96163 0.95993 1.21998 1.00782 0.95554 0.99080 1.20940 0.93937 0.97173 0.85937 1.44338 1.83766 1.02706 1.02022 1.18883 1.37747 0.96546 0.85886 0.89872 1.25278 0.98828 0.97777 0.95208 1.69846 1.45717 1.42252 0.97055 0.87119 0.82087 0.83842 0.76730 1.20474 1.23098 1.19951 1.21402 0.93644 0.85404 0.98790 1.21931 1.03648 0.77361 0.98000 0.89801 0.90046 0.88524 0.75657 0.90733 0.89872 0.91538 0.90680 0.91032 0.91558 0.92880 0.92839 0.92059 0.92932 0.92106 0.96266 0.92770 0.96173 0.90801 0.88056 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.49 36.01 0.38 -0.49 16 2 C 0.07 0.80 7.59 -79.77 -0.61 0.19 16 3 N -0.36 -4.21 12.01 34.78 0.42 -3.79 16 4 O 0.10 0.94 11.06 18.67 0.21 1.14 16 5 C -0.02 -0.12 9.99 30.41 0.30 0.18 16 6 C -0.24 -2.82 5.62 -102.89 -0.58 -3.40 16 7 C 0.59 8.62 7.66 -12.53 -0.10 8.52 16 8 O -0.52 -9.95 15.83 5.27 0.08 -9.87 16 9 N -0.60 -7.57 2.97 -173.78 -0.52 -8.08 16 10 C 0.10 0.77 5.61 -3.49 -0.02 0.75 16 11 C -0.13 -1.07 6.10 -26.39 -0.16 -1.23 16 12 C -0.12 -1.16 4.86 -26.69 -0.13 -1.29 16 13 C -0.09 -1.28 1.92 -90.50 -0.17 -1.45 16 14 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 15 C -0.10 -1.58 1.92 -90.50 -0.17 -1.76 16 16 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 17 C -0.10 -1.50 4.86 -26.69 -0.13 -1.63 16 18 C -0.14 -2.14 6.08 -26.61 -0.16 -2.30 16 19 C 0.15 2.88 6.52 -3.71 -0.02 2.85 16 20 N -0.61 -14.41 2.74 -172.31 -0.47 -14.88 16 21 C -0.26 -7.39 10.00 -15.06 -0.15 -7.54 16 22 H 0.08 2.49 8.06 -52.49 -0.42 2.07 16 23 C 0.03 0.83 5.18 -17.43 -0.09 0.74 16 24 N -0.91 -28.11 13.97 55.49 0.78 -27.33 16 25 Si 0.87 23.23 24.44 -169.99 -4.15 19.07 16 26 H -0.28 -7.24 6.14 56.52 0.35 -6.89 16 27 H -0.30 -8.26 7.11 56.52 0.40 -7.86 16 28 H -0.27 -7.27 6.98 56.52 0.39 -6.87 16 29 C 0.13 2.87 2.99 -3.71 -0.01 2.86 16 30 C 0.11 1.69 5.20 -3.71 -0.02 1.67 16 31 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.16 7.44 -51.93 -0.39 0.78 16 34 H 0.23 0.83 7.25 -52.49 -0.38 0.45 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.54 4.62 -51.93 -0.24 0.30 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 40 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.65 6.34 -51.93 -0.33 0.32 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 46 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 48 H 0.02 0.45 7.28 -51.93 -0.38 0.08 16 49 H 0.07 1.77 3.45 -51.93 -0.18 1.59 16 50 H 0.10 1.95 5.38 -51.93 -0.28 1.67 16 51 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 384.06 15.07 5.79 5.79 Total: -1.00 -34.82 384.06 -7.74 -42.57 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -8.03 Total: -1.30 kcal Atomic # 6 Polarization: -1.47 SS G_CDS: -1.84 Total: -3.31 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: 0.21 Total: -54.09 kcal Atomic # 8 Polarization: -9.02 SS G_CDS: 0.29 Total: -8.73 kcal Atomic # 14 Polarization: 23.23 SS G_CDS: -4.15 Total: 19.07 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.82 -7.74 -42.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053043128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.828 kcal (2) G-P(sol) polarization free energy of solvation -34.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds