Wall clock time and date at job start Wed Apr 1 2020 05:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30008 * 127.33644 * 2 1 4 4 O 1.20663 * 112.30484 * 180.26348 * 3 2 1 5 5 C 1.33485 * 113.15242 * 359.97438 * 4 3 2 6 6 C 1.37359 * 106.34606 * 0.02562 * 5 4 3 7 7 C 1.47398 * 128.56737 * 179.97438 * 6 5 4 8 8 O 1.21605 * 119.99836 * 218.07459 * 7 6 5 9 9 N 1.34781 * 119.99974 * 38.06953 * 7 6 5 10 10 C 1.46922 * 120.62834 * 4.55524 * 9 7 6 11 11 C 1.53629 * 108.54127 * 126.37025 * 10 9 7 12 12 C 1.53032 * 109.24275 * 54.85354 * 11 10 9 13 13 C 1.53042 * 109.54044 * 298.51026 * 12 11 10 14 14 H 1.08996 * 109.52051 * 301.40400 * 13 12 11 15 15 C 1.53003 * 109.49757 * 181.31537 * 13 12 11 16 16 H 1.08997 * 109.49694 * 300.16513 * 15 13 12 17 17 C 1.53045 * 109.49502 * 60.23136 * 15 13 12 18 18 C 1.53042 * 109.53320 * 181.31561 * 17 15 13 19 19 C 1.53185 * 109.31185 * 298.62967 * 18 17 15 20 20 N 1.46931 * 108.77751 * 54.64002 * 19 18 17 21 21 C 1.36932 * 120.63234 * 126.38638 * 20 19 18 22 22 H 1.07994 * 119.99885 * 331.28644 * 21 20 19 23 23 C 1.38813 * 119.99867 * 151.27903 * 21 20 19 24 24 N 1.31617 * 119.99981 * 158.00255 * 23 21 20 25 25 Si 1.86796 * 120.00233 * 338.00267 * 23 21 20 26 26 H 1.48508 * 109.47213 * 89.63979 * 25 23 21 27 27 H 1.48498 * 109.47524 * 209.64010 * 25 23 21 28 28 H 1.48500 * 109.47394 * 329.64184 * 25 23 21 29 29 C 1.46936 * 118.76038 * 306.41020 * 20 19 18 30 30 C 1.46929 * 120.63009 * 184.83425 * 9 7 6 31 31 H 1.09003 * 109.46676 * 269.67938 * 1 2 3 32 32 H 1.09001 * 109.46939 * 29.68205 * 1 2 3 33 33 H 1.09004 * 109.46768 * 149.68003 * 1 2 3 34 34 H 1.08001 * 126.82900 * 179.97438 * 5 4 3 35 35 H 1.09001 * 109.58526 * 246.19928 * 10 9 7 36 36 H 1.09002 * 109.59112 * 6.62572 * 10 9 7 37 37 H 1.09001 * 109.63230 * 294.85934 * 11 10 9 38 38 H 1.09004 * 109.45656 * 174.74121 * 11 10 9 39 39 H 1.08999 * 109.46035 * 178.48982 * 12 11 10 40 40 H 1.09000 * 109.46331 * 58.53511 * 12 11 10 41 41 H 1.08999 * 109.45763 * 301.33412 * 17 15 13 42 42 H 1.09002 * 109.45940 * 61.30578 * 17 15 13 43 43 H 1.08999 * 109.49919 * 58.58561 * 18 17 15 44 44 H 1.09003 * 109.49130 * 178.64852 * 18 17 15 45 45 H 1.08994 * 109.58897 * 174.42807 * 19 18 17 46 46 H 1.09006 * 109.58937 * 294.70673 * 19 18 17 47 47 H 0.96993 * 120.00431 * 180.02562 * 24 23 21 48 48 H 1.08999 * 109.56459 * 293.78207 * 29 20 19 49 49 H 1.09005 * 109.61569 * 173.35605 * 29 20 19 50 50 H 1.09001 * 109.58767 * 353.37531 * 30 9 7 51 51 H 1.09000 * 109.58662 * 113.65466 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4609 0.7207 -0.0051 5 6 3.6494 -0.6007 -0.0090 6 6 2.3992 -1.1696 -0.0062 7 6 2.0401 -2.5992 -0.0090 8 8 1.0856 -2.9851 -0.6562 9 7 2.7697 -3.4787 0.7057 10 6 3.8635 -3.0157 1.5705 11 6 3.6385 -3.5741 2.9839 12 6 3.4986 -5.0961 2.9086 13 6 2.2842 -5.4566 2.0498 14 1 1.3879 -5.0109 2.4811 15 6 2.1260 -6.9777 2.0020 16 1 3.0228 -7.4234 1.5718 17 6 1.9186 -7.5144 3.4201 18 6 1.7930 -9.0391 3.3769 19 6 0.5746 -9.4233 2.5316 20 7 0.6964 -8.7903 1.2113 21 6 0.6113 -9.5391 0.0680 22 1 0.9130 -10.5760 0.0780 23 6 0.1371 -8.9654 -1.1037 24 7 0.4426 -9.4982 -2.2678 25 14 -0.9345 -7.4373 -1.0284 26 1 -0.0746 -6.2272 -1.0682 27 1 -1.8609 -7.4245 -2.1890 28 1 -1.7200 -7.4451 0.2318 29 6 0.9118 -7.3385 1.1404 30 6 2.4902 -4.9192 0.6301 31 1 -0.3633 -0.0058 1.0277 32 1 -0.3633 0.8928 -0.5089 33 1 -0.3633 -0.8871 -0.5188 34 1 4.5967 -1.1195 -0.0141 35 1 4.8154 -3.3753 1.1798 36 1 3.8676 -1.9261 1.6029 37 1 2.7298 -3.1456 3.4067 38 1 4.4893 -3.3177 3.6153 39 1 3.3657 -5.4988 3.9127 40 1 4.3977 -5.5219 2.4630 41 1 2.7704 -7.2377 4.0413 42 1 1.0083 -7.0870 3.8407 43 1 2.6926 -9.4659 2.9336 44 1 1.6693 -9.4227 4.3897 45 1 0.5372 -10.5064 2.4155 46 1 -0.3349 -9.0770 3.0228 47 1 0.1116 -9.0972 -3.0866 48 1 0.0298 -6.8199 1.5163 49 1 1.0973 -7.0461 0.1068 50 1 1.5879 -5.0860 0.0418 51 1 3.3313 -5.4305 0.1620 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053043128.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:01:17 Heat of formation + Delta-G solvation = 20.093835 kcal Electronic energy + Delta-G solvation = -32320.803973 eV Core-core repulsion = 28222.828527 eV Total energy + Delta-G solvation = -4097.975446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -46.04848 -41.45358 -39.91919 -38.20831 -35.75105 -35.49689 -34.38320 -33.13504 -32.99363 -32.45775 -30.12315 -29.65986 -27.62115 -26.85842 -25.25132 -24.89866 -23.63760 -22.76499 -22.27059 -21.47784 -20.86498 -20.50118 -18.94324 -18.81397 -18.59381 -17.90480 -17.42498 -17.05714 -16.43561 -16.09021 -15.69437 -15.47144 -15.36281 -15.19949 -15.12203 -14.73748 -14.48317 -14.40539 -14.32414 -14.20553 -14.01400 -13.82606 -13.78466 -13.64973 -13.56055 -13.17530 -12.71174 -12.47369 -12.39868 -12.35063 -12.06437 -11.95686 -11.79723 -11.65972 -11.59263 -11.44419 -11.36763 -11.08953 -11.03498 -10.99976 -10.68363 -10.64067 -9.74868 -8.91512 -8.24175 -5.51994 0.07068 0.65184 1.24916 1.33052 1.37724 1.53764 1.82198 2.18858 2.33684 2.92108 2.99575 3.23479 3.33534 3.50407 3.71737 3.76168 3.81349 3.88184 4.05860 4.13119 4.17525 4.25971 4.32229 4.32801 4.36746 4.47736 4.50463 4.51990 4.54253 4.64115 4.65061 4.70071 4.75983 4.83176 4.85875 4.95322 5.00884 5.02129 5.03577 5.12441 5.14587 5.17871 5.29744 5.33965 5.42243 5.45269 5.50923 5.64630 5.85660 6.08965 6.22977 6.90331 6.93534 7.13080 7.60677 8.02584 8.95812 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012598 B = 0.003578 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2222.031436 B = 7824.643654 C = 9281.810545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.050 3.950 3 N -0.373 5.373 4 O 0.106 5.894 5 C 0.029 3.971 6 C -0.274 4.274 7 C 0.586 3.414 8 O -0.582 6.582 9 N -0.596 5.596 10 C 0.086 3.914 11 C -0.128 4.128 12 C -0.109 4.109 13 C -0.084 4.084 14 H 0.059 0.941 15 C -0.086 4.086 16 H 0.069 0.931 17 C -0.098 4.098 18 C -0.125 4.125 19 C 0.136 3.864 20 N -0.621 5.621 21 C -0.242 4.242 22 H 0.059 0.941 23 C -0.019 4.019 24 N -0.949 5.949 25 Si 0.927 3.073 26 H -0.281 1.281 27 H -0.312 1.312 28 H -0.273 1.273 29 C 0.132 3.868 30 C 0.113 3.887 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.072 0.928 34 H 0.277 0.723 35 H 0.105 0.895 36 H 0.104 0.896 37 H 0.056 0.944 38 H 0.112 0.888 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.094 0.906 42 H 0.055 0.945 43 H 0.054 0.946 44 H 0.088 0.912 45 H 0.053 0.947 46 H 0.026 0.974 47 H 0.260 0.740 48 H 0.009 0.991 49 H 0.042 0.958 50 H 0.048 0.952 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.175 19.560 15.383 28.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.112 4.112 3 N -0.080 5.080 4 O 0.046 5.954 5 C -0.053 4.053 6 C -0.282 4.282 7 C 0.375 3.625 8 O -0.463 6.463 9 N -0.327 5.327 10 C -0.034 4.034 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.104 4.104 14 H 0.078 0.922 15 C -0.107 4.107 16 H 0.087 0.913 17 C -0.135 4.135 18 C -0.164 4.164 19 C 0.011 3.989 20 N -0.346 5.346 21 C -0.372 4.372 22 H 0.076 0.924 23 C -0.215 4.215 24 N -0.595 5.595 25 Si 0.757 3.243 26 H -0.208 1.208 27 H -0.241 1.241 28 H -0.198 1.198 29 C 0.007 3.993 30 C -0.009 4.009 31 H 0.114 0.886 32 H 0.112 0.888 33 H 0.091 0.909 34 H 0.292 0.708 35 H 0.123 0.877 36 H 0.122 0.878 37 H 0.074 0.926 38 H 0.131 0.869 39 H 0.105 0.895 40 H 0.096 0.904 41 H 0.112 0.888 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.106 0.894 45 H 0.071 0.929 46 H 0.044 0.956 47 H 0.070 0.930 48 H 0.027 0.973 49 H 0.060 0.940 50 H 0.066 0.934 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 12.470 20.659 14.917 28.369 hybrid contribution -1.515 -0.720 -1.155 2.037 sum 10.954 19.939 13.762 26.589 Atomic orbital electron populations 1.20289 0.84919 1.04275 1.04442 1.25066 0.99515 0.86668 0.99956 1.73670 0.89845 1.23577 1.20932 1.84557 1.20670 1.23695 1.66501 1.27223 1.00441 0.82792 0.94816 1.22088 0.94777 0.93979 1.17341 1.17366 0.81773 0.84435 0.78931 1.90838 1.30204 1.79985 1.45272 1.48071 1.34408 1.06123 1.44138 1.22574 0.89290 1.01286 0.90269 1.21990 1.03593 0.95141 0.95871 1.21629 0.96367 0.96305 1.00351 1.21434 1.00285 0.94271 0.94362 0.92243 1.21519 0.97789 0.94120 0.97267 0.91290 1.21484 1.02332 0.94949 0.94756 1.21900 0.98008 0.96650 0.99852 1.21199 0.96493 0.96638 0.84541 1.44554 1.84143 1.03487 1.02374 1.18893 1.35167 0.95856 0.87307 0.92362 1.25693 1.00502 1.00083 0.95180 1.69931 1.47870 1.44156 0.97559 0.86245 0.80454 0.81557 0.76009 1.20791 1.24111 1.19789 1.21361 0.95737 0.83857 0.98329 1.21694 1.01355 0.79457 0.98407 0.88637 0.88820 0.90903 0.70810 0.87731 0.87770 0.92565 0.86947 0.89545 0.90393 0.88816 0.92600 0.92679 0.89377 0.92851 0.95593 0.93050 0.97299 0.93977 0.93365 0.90373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.78 10.49 71.24 0.75 -1.03 16 2 C 0.05 1.17 7.59 45.16 0.34 1.51 16 3 N -0.37 -8.11 12.01 -44.77 -0.54 -8.65 16 4 O 0.11 1.70 11.06 77.05 0.85 2.56 16 5 C 0.03 0.35 9.99 67.61 0.68 1.03 16 6 C -0.27 -6.03 5.62 -18.74 -0.11 -6.14 16 7 C 0.59 17.31 7.66 86.65 0.66 17.98 16 8 O -0.58 -24.07 15.83 -4.05 -0.06 -24.13 16 9 N -0.60 -14.23 2.97 -821.96 -2.44 -16.67 16 10 C 0.09 1.01 5.61 86.51 0.49 1.49 16 11 C -0.13 -1.41 6.10 30.82 0.19 -1.22 16 12 C -0.11 -1.68 4.86 30.62 0.15 -1.53 16 13 C -0.08 -2.15 1.92 -10.71 -0.02 -2.17 16 14 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 15 C -0.09 -2.72 1.92 -10.71 -0.02 -2.74 16 16 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 17 C -0.10 -2.49 4.86 30.62 0.15 -2.34 16 18 C -0.13 -3.58 6.08 30.67 0.19 -3.39 16 19 C 0.14 5.24 6.52 86.36 0.56 5.80 16 20 N -0.62 -30.06 2.74 -699.08 -1.92 -31.98 16 21 C -0.24 -14.15 10.00 84.03 0.84 -13.31 16 22 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 23 C -0.02 -1.17 5.18 84.86 0.44 -0.73 16 24 N -0.95 -61.63 13.97 21.65 0.30 -61.33 16 25 Si 0.93 51.21 24.44 68.60 1.68 52.89 16 26 H -0.28 -15.54 6.14 99.48 0.61 -14.93 16 27 H -0.31 -17.53 7.11 99.48 0.71 -16.82 16 28 H -0.27 -14.73 6.98 99.48 0.69 -14.04 16 29 C 0.13 5.82 2.99 86.36 0.26 6.08 16 30 C 0.11 3.45 5.20 86.36 0.45 3.90 16 31 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.07 1.93 7.44 -2.39 -0.02 1.92 16 34 H 0.28 0.31 7.25 -2.91 -0.02 0.29 16 35 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.10 0.79 4.62 -2.39 -0.01 0.78 16 37 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 39 H 0.09 1.13 6.34 -2.39 -0.02 1.12 16 40 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.09 1.73 6.34 -2.39 -0.02 1.71 16 42 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 44 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 45 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 46 H 0.03 0.98 8.14 -2.38 -0.02 0.96 16 47 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 48 H 0.01 0.42 7.28 -2.39 -0.02 0.40 16 49 H 0.04 2.13 3.45 -2.38 -0.01 2.12 16 50 H 0.05 2.00 5.38 -2.39 -0.01 1.99 16 51 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -84.51 384.06 4.69 -79.82 By element: Atomic # 1 Polarization: 3.49 SS G_CDS: 0.83 Total: 4.31 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: 5.99 Total: 3.17 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -4.59 Total: -118.62 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: 0.79 Total: -21.57 kcal Atomic # 14 Polarization: 51.21 SS G_CDS: 1.68 Total: 52.89 kcal Total: -84.51 4.69 -79.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053043128.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.910 kcal (2) G-P(sol) polarization free energy of solvation -84.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds