Wall clock time and date at job start Wed Apr 1 2020 05:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30007 * 127.33745 * 2 1 4 4 O 1.20662 * 112.30627 * 179.97438 * 3 2 1 5 5 C 1.33495 * 113.15401 * 359.71664 * 4 3 2 6 6 C 1.37359 * 106.33924 * 0.44959 * 5 4 3 7 7 C 1.47403 * 128.56520 * 179.85501 * 6 5 4 8 8 O 1.21603 * 120.00361 * 143.29964 * 7 6 5 9 9 N 1.34777 * 119.99553 * 323.29726 * 7 6 5 10 10 C 1.46926 * 120.63510 * 357.72407 * 9 7 6 11 11 C 1.53193 * 108.77326 * 233.62592 * 10 9 7 12 12 C 1.53037 * 109.31405 * 305.36136 * 11 10 9 13 13 C 1.53040 * 109.53753 * 61.36605 * 12 11 10 14 14 C 1.46928 * 120.62939 * 177.73844 * 9 7 6 15 15 H 1.08999 * 109.70644 * 246.23168 * 14 9 7 16 16 C 1.53007 * 109.58561 * 6.58877 * 14 9 7 17 17 H 1.09008 * 109.49286 * 308.30345 * 16 14 9 18 18 C 1.53033 * 109.49822 * 188.21017 * 16 14 9 19 19 C 1.53044 * 109.53879 * 178.68197 * 18 16 14 20 20 C 1.53188 * 109.31073 * 61.36419 * 19 18 16 21 21 N 1.46929 * 108.77394 * 305.36361 * 20 19 18 22 22 C 1.36938 * 120.62864 * 233.63390 * 21 20 19 23 23 H 1.07999 * 119.99680 * 152.06767 * 22 21 20 24 24 C 1.38817 * 120.00265 * 332.06377 * 22 21 20 25 25 N 1.31620 * 119.99622 * 342.93795 * 24 22 21 26 26 Si 1.86802 * 120.00022 * 162.94461 * 24 22 21 27 27 H 1.48497 * 109.46970 * 89.99880 * 26 24 22 28 28 H 1.48496 * 109.46782 * 210.00016 * 26 24 22 29 29 H 1.48501 * 109.47020 * 329.99854 * 26 24 22 30 30 C 1.46921 * 118.74030 * 53.61054 * 21 20 19 31 31 H 1.09008 * 109.47089 * 270.04052 * 1 2 3 32 32 H 1.08994 * 109.47470 * 30.03950 * 1 2 3 33 33 H 1.09004 * 109.47480 * 150.04296 * 1 2 3 34 34 H 1.07995 * 126.83124 * 180.31453 * 5 4 3 35 35 H 1.09005 * 109.59003 * 113.83963 * 10 9 7 36 36 H 1.08998 * 109.58667 * 353.41324 * 10 9 7 37 37 H 1.09004 * 109.49418 * 185.40920 * 11 10 9 38 38 H 1.09000 * 109.52515 * 65.33434 * 11 10 9 39 39 H 1.09002 * 109.46051 * 301.34703 * 12 11 10 40 40 H 1.09001 * 109.46171 * 181.38565 * 12 11 10 41 41 H 1.09001 * 109.49956 * 178.68273 * 13 12 11 42 42 H 1.09007 * 109.49518 * 58.58487 * 13 12 11 43 43 H 1.09003 * 109.46666 * 58.65832 * 18 16 14 44 44 H 1.09007 * 109.46068 * 298.70069 * 18 16 14 45 45 H 1.08997 * 109.49543 * 301.40872 * 19 18 16 46 46 H 1.09002 * 109.49642 * 181.31418 * 19 18 16 47 47 H 1.08995 * 109.59428 * 65.15109 * 20 19 18 48 48 H 1.09002 * 109.58417 * 185.43691 * 20 19 18 49 49 H 0.96998 * 119.99553 * 179.97438 * 25 24 22 50 50 H 1.09007 * 109.58250 * 66.18043 * 30 21 20 51 51 H 1.08997 * 109.58819 * 186.60052 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4608 0.7207 0.0005 5 6 3.6494 -0.6008 0.0070 6 6 2.3991 -1.1696 0.0007 7 6 2.0400 -2.5993 0.0009 8 8 1.0693 -2.9823 0.6253 9 7 2.7875 -3.4819 -0.6909 10 6 3.9336 -3.0279 -1.4903 11 6 3.7764 -3.5537 -2.9205 12 6 3.5978 -5.0732 -2.8844 13 6 2.3307 -5.4211 -2.0999 14 6 2.4715 -4.9165 -0.6604 15 1 3.2735 -5.4589 -0.1599 16 6 1.1569 -5.1362 0.0910 17 1 1.2029 -4.6361 1.0584 18 6 0.9328 -6.6355 0.3005 19 6 -0.3654 -6.8549 1.0807 20 6 -1.5421 -6.2983 0.2731 21 7 -1.2666 -4.8933 -0.0571 22 6 -2.1705 -3.9131 0.2547 23 1 -1.8310 -2.9048 0.4402 24 6 -3.5231 -4.2155 0.3324 25 7 -3.9814 -5.3252 -0.2070 26 14 -4.6928 -3.0474 1.2024 27 1 -5.2233 -2.0609 0.2274 28 1 -5.8183 -3.8191 1.7879 29 1 -3.9666 -2.3337 2.2833 30 6 -0.0025 -4.5601 -0.7278 31 1 -0.3634 0.0007 1.0277 32 1 -0.3634 0.8896 -0.5144 33 1 -0.3634 -0.8904 -0.5132 34 1 4.5966 -1.1195 0.0135 35 1 4.8567 -3.4146 -1.0582 36 1 3.9619 -1.9383 -1.5025 37 1 4.6663 -3.3055 -3.4992 38 1 2.9023 -3.0954 -3.3831 39 1 4.4614 -5.5289 -2.4000 40 1 3.5104 -5.4528 -3.9024 41 1 2.1914 -6.5021 -2.0945 42 1 1.4698 -4.9452 -2.5697 43 1 1.7687 -7.0528 0.8619 44 1 0.8625 -7.1310 -0.6679 45 1 -0.3055 -6.3390 2.0390 46 1 -0.5124 -7.9216 1.2498 47 1 -1.6595 -6.8732 -0.6455 48 1 -2.4552 -6.3645 0.8647 49 1 -4.9264 -5.5366 -0.1524 50 1 0.0057 -4.9934 -1.7280 51 1 0.1007 -3.4771 -0.7957 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053094065.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:36 Heat of formation + Delta-G solvation = 63.311953 kcal Electronic energy + Delta-G solvation = -33675.690550 eV Core-core repulsion = 29579.589182 eV Total energy + Delta-G solvation = -4096.101368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.95630 -41.92943 -38.83678 -38.24638 -35.73010 -35.16067 -34.17212 -33.22048 -32.39888 -32.15142 -29.77964 -29.67133 -27.18156 -26.85327 -25.05660 -24.70592 -23.75896 -22.71255 -22.29132 -21.67993 -20.62853 -19.93349 -18.79978 -18.60767 -18.36909 -17.54481 -16.97911 -16.79122 -16.39152 -15.77646 -15.72591 -15.56252 -15.14185 -15.00166 -14.86205 -14.65880 -14.35821 -14.24387 -14.10796 -14.01997 -13.92655 -13.83584 -13.54633 -13.25298 -13.00087 -12.86933 -12.68095 -12.35542 -12.29416 -12.13511 -12.01360 -11.92849 -11.74332 -11.60362 -11.53849 -11.37022 -11.08932 -10.95554 -10.80270 -10.48140 -10.47675 -9.95011 -9.36083 -8.52314 -7.80709 -5.21831 0.22731 0.75573 1.40387 1.42237 1.52857 1.73222 2.10180 2.33627 2.53056 3.01959 3.31410 3.34924 3.58127 3.82982 3.90404 3.93655 4.00388 4.06905 4.17245 4.23262 4.30669 4.33992 4.38930 4.42729 4.51139 4.58377 4.61228 4.65995 4.70409 4.72275 4.82377 4.87594 4.97124 5.02516 5.03406 5.07787 5.08681 5.15547 5.20605 5.28938 5.31348 5.46786 5.49875 5.53348 5.58964 5.61125 5.70610 5.78541 6.00995 6.46314 6.50407 7.22438 7.23506 7.32238 7.99895 8.49837 9.25290 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009466 B = 0.005162 C = 0.003649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2957.210094 B = 5423.395730 C = 7671.640816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.044 3.956 3 N -0.377 5.377 4 O 0.105 5.895 5 C 0.017 3.983 6 C -0.267 4.267 7 C 0.567 3.433 8 O -0.520 6.520 9 N -0.596 5.596 10 C 0.090 3.910 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.137 4.137 14 C 0.165 3.835 15 H 0.098 0.902 16 C -0.099 4.099 17 H 0.087 0.913 18 C -0.102 4.102 19 C -0.130 4.130 20 C 0.176 3.824 21 N -0.602 5.602 22 C -0.232 4.232 23 H 0.054 0.946 24 C -0.058 4.058 25 N -0.940 5.940 26 Si 0.956 3.044 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.277 1.277 30 C 0.172 3.828 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.065 0.935 34 H 0.280 0.720 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.041 0.959 39 H 0.086 0.914 40 H 0.067 0.933 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.076 0.924 44 H 0.054 0.946 45 H 0.039 0.961 46 H 0.066 0.934 47 H -0.009 1.009 48 H 0.046 0.954 49 H 0.246 0.754 50 H -0.010 1.010 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.579 3.705 -3.864 26.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.117 4.117 3 N -0.083 5.083 4 O 0.044 5.956 5 C -0.064 4.064 6 C -0.274 4.274 7 C 0.355 3.645 8 O -0.398 6.398 9 N -0.330 5.330 10 C -0.031 4.031 11 C -0.171 4.171 12 C -0.150 4.150 13 C -0.175 4.175 14 C 0.062 3.938 15 H 0.115 0.885 16 C -0.119 4.119 17 H 0.105 0.895 18 C -0.140 4.140 19 C -0.169 4.169 20 C 0.050 3.950 21 N -0.324 5.324 22 C -0.363 4.363 23 H 0.071 0.929 24 C -0.252 4.252 25 N -0.588 5.588 26 Si 0.785 3.215 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 C 0.048 3.952 31 H 0.097 0.903 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.295 0.705 35 H 0.128 0.872 36 H 0.115 0.885 37 H 0.124 0.876 38 H 0.060 0.940 39 H 0.105 0.895 40 H 0.086 0.914 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.094 0.906 44 H 0.073 0.927 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.009 0.991 48 H 0.064 0.936 49 H 0.055 0.945 50 H 0.007 0.993 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 24.718 4.790 -3.550 25.427 hybrid contribution -1.921 -0.454 0.327 2.001 sum 22.796 4.335 -3.223 23.428 Atomic orbital electron populations 1.20098 0.85841 1.03514 1.03596 1.24922 0.98914 0.87418 1.00418 1.73645 0.89972 1.23665 1.21061 1.84525 1.20449 1.24113 1.66526 1.27260 1.00501 0.82637 0.96035 1.22430 0.94152 0.95046 1.15784 1.17288 0.82631 0.83851 0.80748 1.91040 1.27184 1.77785 1.43756 1.47941 1.30946 1.06591 1.47479 1.22401 0.88387 1.01238 0.91086 1.21919 1.02864 0.96011 0.96344 1.21506 0.97023 0.96042 1.00391 1.22097 0.99070 1.01393 0.94970 1.21306 0.96667 0.79500 0.96279 0.88473 1.22122 0.93525 0.95024 1.01207 0.89538 1.21534 0.96706 0.96140 0.99659 1.21978 0.96824 0.99495 0.98596 1.20557 0.95689 0.83946 0.94816 1.44191 1.17632 1.03092 1.67522 1.19369 0.87124 0.91550 1.38304 0.92853 1.25659 0.98176 0.99489 1.01892 1.70190 1.12920 1.27715 1.47942 0.85434 0.78727 0.78587 0.78778 1.21055 1.21712 1.20249 1.21332 0.85161 0.97695 0.91030 0.90296 0.89209 0.91559 0.70512 0.87185 0.88523 0.87630 0.93991 0.89521 0.91384 0.90517 0.93825 0.90552 0.92685 0.94216 0.91512 0.99143 0.93553 0.94490 0.99251 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.33 10.49 71.23 0.75 -1.58 16 2 C 0.04 1.31 7.59 45.16 0.34 1.65 16 3 N -0.38 -10.09 12.01 -44.78 -0.54 -10.63 16 4 O 0.11 2.07 11.06 76.96 0.85 2.92 16 5 C 0.02 0.25 9.97 67.61 0.67 0.92 16 6 C -0.27 -6.72 5.72 -18.74 -0.11 -6.83 16 7 C 0.57 17.02 6.71 86.66 0.58 17.60 16 8 O -0.52 -21.27 10.43 -4.04 -0.04 -21.31 16 9 N -0.60 -13.37 2.95 -798.89 -2.35 -15.73 16 10 C 0.09 1.05 5.59 86.36 0.48 1.53 16 11 C -0.13 -1.68 6.08 30.67 0.19 -1.49 16 12 C -0.11 -1.60 5.88 30.62 0.18 -1.42 16 13 C -0.14 -3.15 4.65 30.67 0.14 -3.00 16 14 C 0.17 4.08 2.64 44.98 0.12 4.20 16 15 H 0.10 1.89 8.13 -2.39 -0.02 1.88 16 16 C -0.10 -3.55 1.57 -10.72 -0.02 -3.56 16 17 H 0.09 3.64 5.65 -28.48 -0.16 3.48 16 18 C -0.10 -3.44 4.96 30.62 0.15 -3.29 16 19 C -0.13 -5.34 6.08 30.67 0.19 -5.16 16 20 C 0.18 9.30 5.30 86.36 0.46 9.76 16 21 N -0.60 -33.26 2.99 -699.11 -2.09 -35.36 16 22 C -0.23 -14.08 9.58 84.03 0.81 -13.27 16 23 H 0.05 3.28 7.89 -2.91 -0.02 3.26 16 24 C -0.06 -3.53 4.92 84.86 0.42 -3.11 16 25 N -0.94 -59.47 11.19 21.65 0.24 -59.22 16 26 Si 0.96 48.75 29.59 68.60 2.03 50.78 16 27 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 28 H -0.29 -14.67 7.11 99.48 0.71 -13.97 16 29 H -0.28 -13.83 7.11 99.48 0.71 -13.12 16 30 C 0.17 7.91 4.41 86.36 0.38 8.30 16 31 H 0.08 2.59 8.14 -2.38 -0.02 2.57 16 32 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 34 H 0.28 0.64 7.01 -2.91 -0.02 0.62 16 35 H 0.11 0.52 8.14 -2.38 -0.02 0.51 16 36 H 0.10 0.90 4.32 -2.39 -0.01 0.89 16 37 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.08 1.72 7.01 -2.39 -0.02 1.71 16 42 H 0.04 1.32 5.88 -2.38 -0.01 1.31 16 43 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.80 6.90 -2.38 -0.02 1.78 16 45 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 46 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 47 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 48 H 0.05 2.77 6.05 -2.39 -0.01 2.75 16 49 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 50 H -0.01 -0.47 5.90 -2.38 -0.01 -0.49 16 51 H 0.05 2.55 4.92 -3.69 -0.02 2.54 16 Total: -1.00 -81.63 379.36 4.62 -77.01 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.79 Total: 10.30 kcal Atomic # 6 Polarization: -4.49 SS G_CDS: 5.73 Total: 1.24 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -4.74 Total: -120.94 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.81 Total: -18.39 kcal Atomic # 14 Polarization: 48.75 SS G_CDS: 2.03 Total: 50.78 kcal Total: -81.63 4.62 -77.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053094065.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.322 kcal (2) G-P(sol) polarization free energy of solvation -81.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds