Wall clock time and date at job start Wed Apr 1 2020 05:00:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33445 * 2 1 4 4 O 1.20660 * 112.30479 * 179.97438 * 3 2 1 5 5 C 1.33490 * 113.15474 * 359.71594 * 4 3 2 6 6 C 1.37365 * 106.33878 * 0.45353 * 5 4 3 7 7 C 1.47403 * 128.56065 * 179.86197 * 6 5 4 8 8 O 1.21607 * 119.99788 * 149.66954 * 7 6 5 9 9 N 1.34780 * 119.99740 * 329.66207 * 7 6 5 10 10 C 1.46952 * 120.65630 * 354.86031 * 9 7 6 11 11 C 1.53194 * 108.89108 * 233.53227 * 10 9 7 12 12 C 1.53039 * 109.31211 * 305.44243 * 11 10 9 13 13 C 1.53049 * 109.53595 * 61.36332 * 12 11 10 14 14 C 1.46929 * 120.62588 * 175.04279 * 9 7 6 15 15 H 1.09004 * 109.58188 * 246.32258 * 14 9 7 16 16 C 1.53002 * 109.58792 * 6.60520 * 14 9 7 17 17 H 1.08993 * 109.52335 * 307.46930 * 16 14 9 18 18 C 1.53042 * 109.49342 * 67.55041 * 16 14 9 19 19 C 1.53049 * 109.52192 * 181.30714 * 18 16 14 20 20 C 1.53192 * 109.31349 * 298.63944 * 19 18 16 21 21 N 1.46929 * 108.77087 * 54.63851 * 20 19 18 22 22 C 1.36940 * 120.62835 * 126.41672 * 21 20 19 23 23 H 1.08004 * 119.99415 * 210.83024 * 22 21 20 24 24 C 1.38807 * 120.00347 * 30.82996 * 22 21 20 25 25 N 1.31618 * 120.00092 * 15.27428 * 24 22 21 26 26 Si 1.86803 * 120.00093 * 195.28266 * 24 22 21 27 27 H 1.48496 * 109.47098 * 89.99470 * 26 24 22 28 28 H 1.48503 * 109.47003 * 209.99739 * 26 24 22 29 29 H 1.48498 * 109.46802 * 329.99611 * 26 24 22 30 30 C 1.46923 * 118.73844 * 306.38389 * 21 20 19 31 31 H 1.09001 * 109.47351 * 270.04148 * 1 2 3 32 32 H 1.08994 * 109.47592 * 30.04746 * 1 2 3 33 33 H 1.08997 * 109.47061 * 150.04806 * 1 2 3 34 34 H 1.07996 * 126.82799 * 180.30839 * 5 4 3 35 35 H 1.09003 * 109.46929 * 113.74773 * 10 9 7 36 36 H 1.09001 * 109.71526 * 353.46824 * 10 9 7 37 37 H 1.09001 * 109.49965 * 185.49146 * 11 10 9 38 38 H 1.08998 * 109.52533 * 65.41120 * 11 10 9 39 39 H 1.08994 * 109.46258 * 301.34758 * 12 11 10 40 40 H 1.08995 * 109.46048 * 181.38084 * 12 11 10 41 41 H 1.08997 * 109.49478 * 178.68009 * 13 12 11 42 42 H 1.09001 * 109.49195 * 58.58517 * 13 12 11 43 43 H 1.09003 * 109.46186 * 61.29782 * 18 16 14 44 44 H 1.08993 * 109.45875 * 301.31902 * 18 16 14 45 45 H 1.08993 * 109.49394 * 58.59181 * 19 18 16 46 46 H 1.09001 * 109.49480 * 178.65399 * 19 18 16 47 47 H 1.08998 * 109.58226 * 174.41994 * 20 19 18 48 48 H 1.08998 * 109.58831 * 294.71038 * 20 19 18 49 49 H 0.96994 * 120.00369 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.58336 * 173.40068 * 30 21 20 51 51 H 1.08993 * 109.59322 * 293.82760 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 0.0005 5 6 3.6494 -0.6006 0.0070 6 6 2.3991 -1.1695 0.0006 7 6 2.0401 -2.5991 0.0010 8 8 1.0073 -2.9665 0.5274 9 7 2.8566 -3.4991 -0.5822 10 6 4.0499 -3.0609 -1.3194 11 6 4.0160 -3.6696 -2.7248 12 6 3.8677 -5.1888 -2.6150 13 6 2.5509 -5.5249 -1.9110 14 6 2.5683 -4.9372 -0.4964 15 1 3.3403 -5.4300 0.0945 16 6 1.2042 -5.1485 0.1635 17 1 1.1697 -4.6084 1.1096 18 6 0.1027 -4.6275 -0.7625 19 6 -1.2597 -4.8087 -0.0891 20 6 -1.5055 -6.2994 0.1641 21 7 -0.3760 -6.8410 0.9320 22 6 -0.5894 -7.5183 2.1030 23 1 0.1497 -7.4827 2.8897 24 6 -1.7554 -8.2505 2.2787 25 7 -2.5091 -8.5469 1.2412 26 14 -2.2551 -8.8152 3.9878 27 1 -3.1058 -7.7770 4.6231 28 1 -3.0173 -10.0856 3.8863 29 1 -1.0394 -9.0318 4.8127 30 6 0.9865 -6.6428 0.4194 31 1 -0.3634 0.0007 1.0277 32 1 -0.3634 0.8895 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 4.5967 -1.1193 0.0134 35 1 4.9445 -3.3989 -0.7963 36 1 4.0584 -1.9734 -1.3923 37 1 4.9427 -3.4313 -3.2470 38 1 3.1709 -3.2606 -3.2786 39 1 4.7004 -5.5944 -2.0404 40 1 3.8679 -5.6268 -3.6130 41 1 2.4349 -6.6072 -1.8540 42 1 1.7194 -5.0984 -2.4720 43 1 0.1218 -5.1849 -1.6991 44 1 0.2694 -3.5698 -0.9659 45 1 -1.2709 -4.2719 0.8593 46 1 -2.0418 -4.4158 -0.7389 47 1 -2.4275 -6.4265 0.7314 48 1 -1.5872 -6.8233 -0.7883 49 1 -3.3241 -9.0582 1.3641 50 1 1.7088 -6.9965 1.1553 51 1 1.1106 -7.1950 -0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053094066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:40 Heat of formation + Delta-G solvation = 83.634474 kcal Electronic energy + Delta-G solvation = -33128.759412 eV Core-core repulsion = 29033.539295 eV Total energy + Delta-G solvation = -4095.220117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.10799 -40.91324 -37.50888 -37.05214 -34.73369 -33.77847 -33.01984 -32.01286 -31.30298 -30.23472 -28.87410 -28.48515 -25.87542 -25.13161 -24.24157 -23.57467 -21.97464 -21.69626 -21.21306 -20.66951 -19.46508 -18.58536 -17.92769 -17.54138 -16.71479 -16.51044 -15.91488 -15.55808 -14.95481 -14.64017 -14.46804 -14.30701 -14.02675 -13.79704 -13.62576 -13.44247 -13.29614 -13.20811 -12.99434 -12.77195 -12.66122 -12.48249 -12.11273 -11.88444 -11.62226 -11.45579 -11.23161 -11.05874 -10.97115 -10.81878 -10.67896 -10.54868 -10.47278 -10.17842 -10.05874 -9.92245 -9.85945 -9.53270 -9.38163 -9.11641 -8.76489 -8.38551 -8.30825 -6.46902 -5.67588 -3.12152 0.91879 1.64867 2.59350 2.95670 3.11098 3.43881 3.50277 3.51394 3.87511 4.10414 4.42702 4.53605 4.58721 4.66798 4.74068 4.81880 5.00799 5.09475 5.16232 5.19309 5.36092 5.42537 5.44392 5.47195 5.49586 5.56685 5.59755 5.74005 5.79321 5.85946 5.92734 5.99289 6.00502 6.04041 6.11220 6.28390 6.37972 6.46087 6.58630 6.69681 6.72082 6.86053 6.99543 7.08399 7.19257 7.33159 7.42555 7.60348 7.82915 7.90601 8.00018 8.25647 8.58882 9.34077 9.97584 10.56652 11.40316 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.003496 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.325217 B = 8007.387176 C = 9206.738320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.067 3.933 3 N -0.362 5.362 4 O 0.094 5.906 5 C -0.026 4.026 6 C -0.239 4.239 7 C 0.573 3.427 8 O -0.477 6.477 9 N -0.599 5.599 10 C 0.093 3.907 11 C -0.133 4.133 12 C -0.120 4.120 13 C -0.137 4.137 14 C 0.157 3.843 15 H 0.071 0.929 16 C -0.103 4.103 17 H 0.104 0.896 18 C -0.086 4.086 19 C -0.134 4.134 20 C 0.174 3.826 21 N -0.587 5.587 22 C -0.249 4.249 23 H 0.061 0.939 24 C 0.004 3.996 25 N -0.903 5.903 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.280 1.280 30 C 0.150 3.850 31 H 0.088 0.912 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.226 0.774 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.081 0.919 42 H 0.074 0.926 43 H 0.034 0.966 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.037 0.963 47 H 0.077 0.923 48 H 0.012 0.988 49 H 0.252 0.748 50 H 0.046 0.954 51 H 0.013 0.987 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.818 15.148 -8.845 23.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.095 4.095 3 N -0.069 5.069 4 O 0.034 5.966 5 C -0.108 4.108 6 C -0.246 4.246 7 C 0.360 3.640 8 O -0.352 6.352 9 N -0.333 5.333 10 C -0.030 4.030 11 C -0.171 4.171 12 C -0.158 4.158 13 C -0.175 4.175 14 C 0.055 3.945 15 H 0.089 0.911 16 C -0.123 4.123 17 H 0.122 0.878 18 C -0.123 4.123 19 C -0.173 4.173 20 C 0.048 3.952 21 N -0.309 5.309 22 C -0.379 4.379 23 H 0.079 0.921 24 C -0.195 4.195 25 N -0.547 5.547 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.205 1.205 30 C 0.023 3.977 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.243 0.757 35 H 0.089 0.911 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.053 0.947 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.055 0.945 47 H 0.096 0.904 48 H 0.030 0.970 49 H 0.062 0.938 50 H 0.064 0.936 51 H 0.031 0.969 Dipole moment (debyes) X Y Z Total from point charges 14.911 16.133 -8.543 23.571 hybrid contribution -0.144 -1.238 0.747 1.453 sum 14.767 14.895 -7.796 22.376 Atomic orbital electron populations 1.20228 0.84819 1.03990 1.04259 1.24873 0.98950 0.86316 0.99367 1.73658 0.89273 1.23641 1.20372 1.84558 1.21590 1.23142 1.67348 1.26582 1.00362 0.83899 0.99951 1.22625 0.92697 0.96266 1.12998 1.16882 0.83820 0.82693 0.80615 1.90999 1.23098 1.77947 1.43113 1.47882 1.25485 1.06933 1.53012 1.22087 0.87993 1.00094 0.92826 1.21891 1.02381 0.96740 0.96108 1.21545 0.98294 0.95070 1.00875 1.22135 0.97544 1.01940 0.95865 1.21447 0.99229 0.77573 0.96245 0.91136 1.22303 0.90397 0.98767 1.00789 0.87791 1.21675 0.95244 0.99082 0.96324 1.22074 0.95313 1.00439 0.99495 1.20713 0.92246 0.87710 0.94512 1.43899 0.99624 1.62689 1.24698 1.19161 1.04630 1.22625 0.91457 0.92085 1.25075 0.99895 0.97612 0.96908 1.70033 1.15658 1.41226 1.27816 0.86324 0.78390 0.77725 0.84527 1.21506 1.21837 1.20495 1.21012 0.88561 0.91848 0.96296 0.89373 0.90521 0.89125 0.75745 0.91107 0.89677 0.90907 0.91490 0.91896 0.91796 0.90068 0.90752 0.94724 0.92395 0.92515 0.94477 0.90448 0.96954 0.93809 0.93566 0.96906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.83 10.28 36.00 0.37 -0.46 16 2 C 0.07 0.82 7.58 -79.77 -0.60 0.21 16 3 N -0.36 -4.38 12.01 34.78 0.42 -3.96 16 4 O 0.09 0.94 11.06 18.66 0.21 1.14 16 5 C -0.03 -0.21 9.99 30.41 0.30 0.09 16 6 C -0.24 -2.73 5.84 -102.89 -0.60 -3.33 16 7 C 0.57 7.76 6.67 -12.53 -0.08 7.67 16 8 O -0.48 -8.19 9.83 5.27 0.05 -8.13 16 9 N -0.60 -6.89 2.95 -166.46 -0.49 -7.38 16 10 C 0.09 0.69 5.42 -3.70 -0.02 0.67 16 11 C -0.13 -0.99 6.08 -26.61 -0.16 -1.15 16 12 C -0.12 -1.06 5.88 -26.69 -0.16 -1.21 16 13 C -0.14 -1.65 4.66 -26.61 -0.12 -1.78 16 14 C 0.16 2.12 2.64 -67.60 -0.18 1.94 16 15 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 16 C -0.10 -1.84 1.57 -90.51 -0.14 -1.99 16 17 H 0.10 2.17 5.81 -52.35 -0.30 1.86 16 18 C -0.09 -1.59 3.48 -26.68 -0.09 -1.68 16 19 C -0.13 -2.85 6.00 -26.61 -0.16 -3.01 16 20 C 0.17 4.40 5.27 -3.71 -0.02 4.38 16 21 N -0.59 -15.32 2.98 -172.34 -0.51 -15.83 16 22 C -0.25 -7.09 9.56 -15.06 -0.14 -7.23 16 23 H 0.06 1.72 7.88 -52.48 -0.41 1.31 16 24 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 25 N -0.90 -27.02 11.30 55.49 0.63 -26.39 16 26 Si 0.90 22.38 29.58 -169.99 -5.03 17.35 16 27 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 30 C 0.15 3.21 5.69 -3.73 -0.02 3.19 16 31 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.09 1.07 8.04 -51.93 -0.42 0.65 16 34 H 0.23 0.86 6.63 -52.49 -0.35 0.52 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.52 4.20 -51.93 -0.22 0.30 16 37 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.08 1.06 6.84 -51.93 -0.36 0.70 16 42 H 0.07 1.00 6.03 -51.93 -0.31 0.68 16 43 H 0.03 0.63 6.29 -51.93 -0.33 0.31 16 44 H 0.06 1.03 5.09 -51.91 -0.26 0.77 16 45 H 0.06 1.29 7.97 -51.93 -0.41 0.88 16 46 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 2.19 6.22 -51.93 -0.32 1.87 16 48 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 50 H 0.05 0.98 7.93 -51.93 -0.41 0.57 16 51 H 0.01 0.28 6.60 -51.93 -0.34 -0.06 16 LS Contribution 377.85 15.07 5.69 5.69 Total: -1.00 -33.31 377.85 -8.77 -42.09 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -7.81 Total: -0.91 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -1.92 Total: -3.66 kcal Atomic # 7 Polarization: -53.61 SS G_CDS: 0.04 Total: -53.57 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: 0.26 Total: -6.99 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.03 Total: 17.35 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.31 -8.77 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053094066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.722 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds