Wall clock time and date at job start Wed Apr 1 2020 05:00:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.30016 * 127.33445 * 2 1 4 4 O 1.20660 * 112.30479 * 179.97438 * 3 2 1 5 5 C 1.33490 * 113.15474 * 359.71594 * 4 3 2 6 6 C 1.37365 * 106.33878 * 0.45353 * 5 4 3 7 7 C 1.47403 * 128.56065 * 179.86197 * 6 5 4 8 8 O 1.21607 * 119.99788 * 149.66954 * 7 6 5 9 9 N 1.34780 * 119.99740 * 329.66207 * 7 6 5 10 10 C 1.46952 * 120.65630 * 354.86031 * 9 7 6 11 11 C 1.53194 * 108.89108 * 233.53227 * 10 9 7 12 12 C 1.53039 * 109.31211 * 305.44243 * 11 10 9 13 13 C 1.53049 * 109.53595 * 61.36332 * 12 11 10 14 14 C 1.46929 * 120.62588 * 175.04279 * 9 7 6 15 15 H 1.09004 * 109.58188 * 246.32258 * 14 9 7 16 16 C 1.53002 * 109.58792 * 6.60520 * 14 9 7 17 17 H 1.08993 * 109.52335 * 307.46930 * 16 14 9 18 18 C 1.53042 * 109.49342 * 67.55041 * 16 14 9 19 19 C 1.53049 * 109.52192 * 181.30714 * 18 16 14 20 20 C 1.53192 * 109.31349 * 298.63944 * 19 18 16 21 21 N 1.46929 * 108.77087 * 54.63851 * 20 19 18 22 22 C 1.36940 * 120.62835 * 126.41672 * 21 20 19 23 23 H 1.08004 * 119.99415 * 210.83024 * 22 21 20 24 24 C 1.38807 * 120.00347 * 30.82996 * 22 21 20 25 25 N 1.31618 * 120.00092 * 15.27428 * 24 22 21 26 26 Si 1.86803 * 120.00093 * 195.28266 * 24 22 21 27 27 H 1.48496 * 109.47098 * 89.99470 * 26 24 22 28 28 H 1.48503 * 109.47003 * 209.99739 * 26 24 22 29 29 H 1.48498 * 109.46802 * 329.99611 * 26 24 22 30 30 C 1.46923 * 118.73844 * 306.38389 * 21 20 19 31 31 H 1.09001 * 109.47351 * 270.04148 * 1 2 3 32 32 H 1.08994 * 109.47592 * 30.04746 * 1 2 3 33 33 H 1.08997 * 109.47061 * 150.04806 * 1 2 3 34 34 H 1.07996 * 126.82799 * 180.30839 * 5 4 3 35 35 H 1.09003 * 109.46929 * 113.74773 * 10 9 7 36 36 H 1.09001 * 109.71526 * 353.46824 * 10 9 7 37 37 H 1.09001 * 109.49965 * 185.49146 * 11 10 9 38 38 H 1.08998 * 109.52533 * 65.41120 * 11 10 9 39 39 H 1.08994 * 109.46258 * 301.34758 * 12 11 10 40 40 H 1.08995 * 109.46048 * 181.38084 * 12 11 10 41 41 H 1.08997 * 109.49478 * 178.68009 * 13 12 11 42 42 H 1.09001 * 109.49195 * 58.58517 * 13 12 11 43 43 H 1.09003 * 109.46186 * 61.29782 * 18 16 14 44 44 H 1.08993 * 109.45875 * 301.31902 * 18 16 14 45 45 H 1.08993 * 109.49394 * 58.59181 * 19 18 16 46 46 H 1.09001 * 109.49480 * 178.65399 * 19 18 16 47 47 H 1.08998 * 109.58226 * 174.41994 * 20 19 18 48 48 H 1.08998 * 109.58831 * 294.71038 * 20 19 18 49 49 H 0.96994 * 120.00369 * 180.02562 * 25 24 22 50 50 H 1.09006 * 109.58336 * 173.40068 * 30 21 20 51 51 H 1.08993 * 109.59322 * 293.82760 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7209 0.0005 5 6 3.6494 -0.6006 0.0070 6 6 2.3991 -1.1695 0.0006 7 6 2.0401 -2.5991 0.0010 8 8 1.0073 -2.9665 0.5274 9 7 2.8566 -3.4991 -0.5822 10 6 4.0499 -3.0609 -1.3194 11 6 4.0160 -3.6696 -2.7248 12 6 3.8677 -5.1888 -2.6150 13 6 2.5509 -5.5249 -1.9110 14 6 2.5683 -4.9372 -0.4964 15 1 3.3403 -5.4300 0.0945 16 6 1.2042 -5.1485 0.1635 17 1 1.1697 -4.6084 1.1096 18 6 0.1027 -4.6275 -0.7625 19 6 -1.2597 -4.8087 -0.0891 20 6 -1.5055 -6.2994 0.1641 21 7 -0.3760 -6.8410 0.9320 22 6 -0.5894 -7.5183 2.1030 23 1 0.1497 -7.4827 2.8897 24 6 -1.7554 -8.2505 2.2787 25 7 -2.5091 -8.5469 1.2412 26 14 -2.2551 -8.8152 3.9878 27 1 -3.1058 -7.7770 4.6231 28 1 -3.0173 -10.0856 3.8863 29 1 -1.0394 -9.0318 4.8127 30 6 0.9865 -6.6428 0.4194 31 1 -0.3634 0.0007 1.0277 32 1 -0.3634 0.8895 -0.5145 33 1 -0.3633 -0.8904 -0.5131 34 1 4.5967 -1.1193 0.0134 35 1 4.9445 -3.3989 -0.7963 36 1 4.0584 -1.9734 -1.3923 37 1 4.9427 -3.4313 -3.2470 38 1 3.1709 -3.2606 -3.2786 39 1 4.7004 -5.5944 -2.0404 40 1 3.8679 -5.6268 -3.6130 41 1 2.4349 -6.6072 -1.8540 42 1 1.7194 -5.0984 -2.4720 43 1 0.1218 -5.1849 -1.6991 44 1 0.2694 -3.5698 -0.9659 45 1 -1.2709 -4.2719 0.8593 46 1 -2.0418 -4.4158 -0.7389 47 1 -2.4275 -6.4265 0.7314 48 1 -1.5872 -6.8233 -0.7883 49 1 -3.3241 -9.0582 1.3641 50 1 1.7088 -6.9965 1.1553 51 1 1.1106 -7.1950 -0.5120 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053094066.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:39 Heat of formation + Delta-G solvation = 63.613767 kcal Electronic energy + Delta-G solvation = -33129.627575 eV Core-core repulsion = 29033.539295 eV Total energy + Delta-G solvation = -4096.088280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.94702 -41.99276 -38.87737 -38.26694 -35.78600 -35.12723 -34.12897 -33.26680 -32.44463 -32.18916 -29.76528 -29.73915 -27.20772 -26.86280 -25.06734 -24.74384 -23.75981 -22.77616 -22.31651 -21.64711 -20.74953 -19.88386 -18.77896 -18.62082 -18.33665 -17.62138 -17.11974 -16.69104 -16.51934 -15.88310 -15.73033 -15.43229 -15.29309 -15.04841 -14.84346 -14.47059 -14.42825 -14.32760 -14.18095 -14.09454 -13.93251 -13.68426 -13.48876 -13.12018 -13.05490 -12.91969 -12.71007 -12.37137 -12.25017 -12.22903 -12.07128 -11.92628 -11.88785 -11.57780 -11.51124 -11.30716 -11.05582 -10.95023 -10.83611 -10.56323 -10.50279 -9.97607 -9.39933 -8.58565 -7.86051 -5.34680 0.17543 0.76402 1.43237 1.45930 1.54325 1.73940 2.08048 2.30842 2.50294 3.03501 3.27440 3.33788 3.55426 3.79341 3.88683 3.90175 3.94731 4.05410 4.12802 4.27797 4.30163 4.38198 4.41730 4.44669 4.53973 4.57176 4.61498 4.65730 4.71864 4.74286 4.82010 4.85253 4.92606 4.93672 4.99450 5.10298 5.11563 5.16708 5.19055 5.25930 5.30410 5.43249 5.48367 5.54463 5.56385 5.59077 5.66838 5.72037 5.96278 6.40440 6.47699 7.15938 7.21075 7.26983 7.88042 8.42182 9.19538 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013265 B = 0.003496 C = 0.003041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.325217 B = 8007.387176 C = 9206.738320 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.049 3.951 3 N -0.379 5.379 4 O 0.101 5.899 5 C 0.015 3.985 6 C -0.268 4.268 7 C 0.572 3.428 8 O -0.527 6.527 9 N -0.594 5.594 10 C 0.086 3.914 11 C -0.129 4.129 12 C -0.115 4.115 13 C -0.134 4.134 14 C 0.165 3.835 15 H 0.083 0.917 16 C -0.087 4.087 17 H 0.079 0.921 18 C -0.072 4.072 19 C -0.122 4.122 20 C 0.184 3.816 21 N -0.607 5.607 22 C -0.264 4.264 23 H 0.061 0.939 24 C -0.049 4.049 25 N -0.935 5.935 26 Si 0.966 3.034 27 H -0.288 1.288 28 H -0.291 1.291 29 H -0.267 1.267 30 C 0.148 3.852 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.275 0.725 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.052 0.948 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.034 0.966 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.050 0.950 47 H 0.041 0.959 48 H -0.008 1.008 49 H 0.249 0.751 50 H 0.045 0.955 51 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.590 16.525 -9.446 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.113 4.113 3 N -0.087 5.087 4 O 0.041 5.959 5 C -0.067 4.067 6 C -0.275 4.275 7 C 0.361 3.639 8 O -0.406 6.406 9 N -0.327 5.327 10 C -0.035 4.035 11 C -0.167 4.167 12 C -0.152 4.152 13 C -0.172 4.172 14 C 0.061 3.939 15 H 0.101 0.899 16 C -0.107 4.107 17 H 0.097 0.903 18 C -0.109 4.109 19 C -0.161 4.161 20 C 0.058 3.942 21 N -0.330 5.330 22 C -0.394 4.394 23 H 0.078 0.922 24 C -0.244 4.244 25 N -0.581 5.581 26 Si 0.794 3.206 27 H -0.215 1.215 28 H -0.217 1.217 29 H -0.191 1.191 30 C 0.022 3.978 31 H 0.101 0.899 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.291 0.709 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.089 0.911 41 H 0.085 0.915 42 H 0.075 0.925 43 H 0.052 0.948 44 H 0.089 0.911 45 H 0.056 0.944 46 H 0.069 0.931 47 H 0.059 0.941 48 H 0.011 0.989 49 H 0.058 0.942 50 H 0.063 0.937 51 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges 18.744 17.540 -9.173 27.260 hybrid contribution -1.240 -1.648 0.901 2.250 sum 17.505 15.892 -8.272 25.047 Atomic orbital electron populations 1.20173 0.85016 1.03971 1.03919 1.25055 0.99387 0.86961 0.99886 1.73664 0.89940 1.23911 1.21161 1.84542 1.20681 1.24043 1.66679 1.27344 1.00781 0.82772 0.95792 1.22395 0.94083 0.94940 1.16088 1.17180 0.83339 0.83675 0.79751 1.90978 1.25291 1.78840 1.45474 1.47926 1.26447 1.05592 1.52692 1.22481 0.87025 1.01324 0.92678 1.21895 1.03468 0.95244 0.96134 1.21521 0.96312 0.96490 1.00921 1.22067 0.99359 1.00749 0.95039 1.21193 0.96450 0.79406 0.96807 0.89917 1.21984 0.93293 0.95224 1.00166 0.90309 1.21567 0.93533 0.99905 0.95863 1.21899 0.97888 0.97078 0.99234 1.20474 0.90984 0.90007 0.92692 1.44159 1.01458 1.62847 1.24517 1.19474 1.04915 1.22520 0.92504 0.92178 1.25854 0.99929 0.98083 1.00542 1.70186 1.15909 1.42130 1.29835 0.85283 0.78183 0.76949 0.80150 1.21498 1.21718 1.19132 1.21177 0.86158 0.94524 0.95945 0.89920 0.89150 0.90450 0.70946 0.87907 0.87862 0.87654 0.92924 0.90395 0.91120 0.91514 0.92460 0.94768 0.91129 0.94370 0.93112 0.94079 0.98949 0.94162 0.93676 0.96750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.65 10.28 71.23 0.73 -0.92 16 2 C 0.05 1.14 7.58 45.15 0.34 1.49 16 3 N -0.38 -8.51 12.01 -44.78 -0.54 -9.04 16 4 O 0.10 1.68 11.06 77.01 0.85 2.53 16 5 C 0.01 0.17 9.99 67.61 0.68 0.85 16 6 C -0.27 -5.56 5.84 -18.74 -0.11 -5.67 16 7 C 0.57 14.75 6.67 86.66 0.58 15.33 16 8 O -0.53 -18.41 9.83 -4.05 -0.04 -18.45 16 9 N -0.59 -12.10 2.95 -798.81 -2.36 -14.46 16 10 C 0.09 0.85 5.42 86.36 0.47 1.32 16 11 C -0.13 -1.33 6.08 30.67 0.19 -1.14 16 12 C -0.11 -1.61 5.88 30.62 0.18 -1.43 16 13 C -0.13 -3.03 4.66 30.67 0.14 -2.89 16 14 C 0.16 4.18 2.64 44.97 0.12 4.30 16 15 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 16 C -0.09 -3.17 1.57 -10.72 -0.02 -3.18 16 17 H 0.08 3.38 5.81 -14.09 -0.08 3.30 16 18 C -0.07 -2.71 3.48 30.62 0.11 -2.60 16 19 C -0.12 -5.44 6.00 30.68 0.18 -5.25 16 20 C 0.18 9.87 5.27 86.36 0.46 10.33 16 21 N -0.61 -33.05 2.98 -699.15 -2.08 -35.13 16 22 C -0.26 -15.52 9.56 84.03 0.80 -14.72 16 23 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 24 C -0.05 -2.87 4.94 84.86 0.42 -2.45 16 25 N -0.93 -58.16 11.30 21.65 0.24 -57.92 16 26 Si 0.97 47.14 29.58 68.60 2.03 49.17 16 27 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 28 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 29 H -0.27 -12.33 7.11 99.48 0.71 -11.63 16 30 C 0.15 6.50 5.69 86.35 0.49 6.99 16 31 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.08 1.92 8.04 -2.39 -0.02 1.90 16 34 H 0.28 0.26 6.63 -2.91 -0.02 0.25 16 35 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.10 0.66 4.20 -2.39 -0.01 0.65 16 37 H 0.11 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 39 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.07 1.69 6.84 -2.39 -0.02 1.68 16 42 H 0.06 1.49 6.03 -2.39 -0.01 1.48 16 43 H 0.03 1.28 6.29 -2.39 -0.02 1.26 16 44 H 0.07 2.55 5.09 -7.14 -0.04 2.51 16 45 H 0.04 1.83 7.97 -2.39 -0.02 1.81 16 46 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.04 2.47 6.22 -2.39 -0.01 2.45 16 48 H -0.01 -0.43 8.14 -2.39 -0.02 -0.44 16 49 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 50 H 0.04 1.95 7.93 -2.38 -0.02 1.93 16 51 H 0.01 0.64 6.60 -2.39 -0.02 0.62 16 Total: -1.00 -77.88 377.85 4.72 -73.16 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: 0.85 Total: 9.79 kcal Atomic # 6 Polarization: -5.40 SS G_CDS: 5.76 Total: 0.35 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -4.73 Total: -116.55 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: 0.81 Total: -15.92 kcal Atomic # 14 Polarization: 47.14 SS G_CDS: 2.03 Total: 49.17 kcal Total: -77.88 4.72 -73.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053094066.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.773 kcal (2) G-P(sol) polarization free energy of solvation -77.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds