Wall clock time and date at job start Wed Apr 1 2020 05:00:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30014 * 127.33799 * 2 1 4 4 O 1.20650 * 112.30131 * 180.29651 * 3 2 1 5 5 C 1.33499 * 113.15682 * 359.71893 * 4 3 2 6 6 C 1.37354 * 106.34021 * 359.97438 * 5 4 3 7 7 C 1.47403 * 128.56427 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00066 * 203.25087 * 7 6 5 9 9 N 1.34784 * 119.99583 * 23.25888 * 7 6 5 10 10 C 1.46921 * 120.62910 * 1.45061 * 9 7 6 11 11 C 1.53200 * 108.77332 * 126.41709 * 10 9 7 12 12 C 1.53042 * 109.31000 * 54.63310 * 11 10 9 13 13 C 1.53045 * 109.53929 * 298.63161 * 12 11 10 14 14 C 1.46924 * 120.62643 * 181.47416 * 9 7 6 15 15 H 1.09001 * 109.58394 * 113.65406 * 14 9 7 16 16 C 1.53000 * 109.58979 * 353.37380 * 14 9 7 17 17 H 1.08998 * 109.49923 * 51.50946 * 16 14 9 18 18 C 1.53038 * 109.52113 * 291.42911 * 16 14 9 19 19 C 1.53044 * 109.53690 * 178.66346 * 18 16 14 20 20 C 1.52767 * 109.38134 * 61.24333 * 19 18 16 21 21 N 1.46931 * 109.00389 * 305.58717 * 20 19 18 22 22 C 1.36939 * 120.63044 * 233.58455 * 21 20 19 23 23 H 1.07998 * 119.99672 * 37.81859 * 22 21 20 24 24 C 1.38804 * 120.00004 * 217.82761 * 22 21 20 25 25 N 1.31628 * 119.99923 * 179.59941 * 24 22 21 26 26 Si 1.86799 * 120.00092 * 359.59110 * 24 22 21 27 27 H 1.48503 * 109.47067 * 275.06843 * 26 24 22 28 28 H 1.48493 * 109.47090 * 35.07000 * 26 24 22 29 29 H 1.48501 * 109.47102 * 155.07128 * 26 24 22 30 30 C 1.46928 * 118.74022 * 53.31213 * 21 20 19 31 31 H 1.08997 * 109.47710 * 270.15222 * 1 2 3 32 32 H 1.09002 * 109.46875 * 30.14827 * 1 2 3 33 33 H 1.09002 * 109.47386 * 150.14644 * 1 2 3 34 34 H 1.07999 * 126.82775 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.58579 * 246.19888 * 10 9 7 36 36 H 1.09001 * 109.59482 * 6.63067 * 10 9 7 37 37 H 1.09001 * 109.49559 * 174.58227 * 11 10 9 38 38 H 1.08992 * 109.49440 * 294.68030 * 11 10 9 39 39 H 1.09000 * 109.46346 * 58.65979 * 12 11 10 40 40 H 1.09004 * 109.45673 * 178.61687 * 12 11 10 41 41 H 1.08999 * 109.49738 * 301.42026 * 13 12 11 42 42 H 1.08996 * 109.49679 * 181.31809 * 13 12 11 43 43 H 1.08996 * 109.46168 * 298.68536 * 18 16 14 44 44 H 1.09003 * 109.46241 * 58.64629 * 18 16 14 45 45 H 1.09002 * 109.49972 * 181.31576 * 19 18 16 46 46 H 1.08996 * 109.49963 * 301.38513 * 19 18 16 47 47 H 1.09002 * 109.50854 * 185.70840 * 20 19 18 48 48 H 1.09000 * 109.43482 * 65.41787 * 20 19 18 49 49 H 0.97000 * 119.99812 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.58812 * 66.42882 * 30 21 20 51 51 H 1.09004 * 109.58508 * 186.85602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0058 5 6 3.6493 -0.6009 -0.0047 6 6 2.3991 -1.1696 0.0036 7 6 2.0399 -2.5992 0.0075 8 8 0.9509 -2.9537 -0.4012 9 7 2.9186 -3.5135 0.4643 10 6 4.2257 -3.0977 0.9909 11 6 4.4033 -3.6892 2.3929 12 6 4.2036 -5.2053 2.3316 13 6 2.7835 -5.5156 1.8528 14 6 2.5877 -4.9449 0.4447 15 1 3.2433 -5.4619 -0.2559 16 6 1.1308 -5.1287 0.0149 17 1 0.9529 -4.5816 -0.9109 18 6 0.2035 -4.5956 1.1095 19 6 -1.2531 -4.7488 0.6656 20 6 -1.5635 -6.2285 0.4468 21 7 -0.5835 -6.7889 -0.4937 22 6 -0.9962 -7.4536 -1.6176 23 1 -1.8618 -7.1070 -2.1626 24 6 -0.3020 -8.5726 -2.0563 25 7 -0.7033 -9.2161 -3.1322 26 14 1.2018 -9.1654 -1.1200 27 1 2.3986 -8.4166 -1.5807 28 1 1.0027 -8.9348 0.3333 29 1 1.3996 -10.6160 -1.3686 30 6 0.8476 -6.6175 -0.2084 31 1 -0.3634 0.0027 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8913 -0.5116 34 1 4.5966 -1.1197 -0.0093 35 1 5.0167 -3.4646 0.3367 36 1 4.2687 -2.0099 1.0451 37 1 5.4070 -3.4688 2.7562 38 1 3.6674 -3.2523 3.0678 39 1 4.9238 -5.6387 1.6375 40 1 4.3537 -5.6317 3.3235 41 1 2.0629 -5.0615 2.5329 42 1 2.6345 -6.5951 1.8317 43 1 0.3645 -5.1596 2.0282 44 1 0.4200 -3.5422 1.2876 45 1 -1.9122 -4.3477 1.4356 46 1 -1.4087 -4.2049 -0.2660 47 1 -2.5670 -6.3328 0.0343 48 1 -1.5004 -6.7569 1.3981 49 1 -0.2180 -9.9979 -3.4389 50 1 1.1112 -7.1781 0.6883 51 1 1.4343 -6.9784 -1.0532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053094068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:46 Heat of formation + Delta-G solvation = 96.412066 kcal Electronic energy + Delta-G solvation = -33484.309691 eV Core-core repulsion = 29389.643652 eV Total energy + Delta-G solvation = -4094.666039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -45.14801 -40.99881 -37.66654 -37.31523 -34.78316 -33.86732 -33.03625 -32.30164 -31.56618 -30.55427 -28.90569 -28.88167 -26.04774 -25.17667 -24.35056 -23.67785 -22.45055 -21.86570 -21.22961 -20.69016 -19.58506 -18.84942 -17.96673 -17.55467 -16.98635 -16.64453 -15.93998 -15.63978 -15.21936 -14.98281 -14.44793 -14.27881 -14.10594 -13.95713 -13.67751 -13.52813 -13.41192 -13.23256 -13.21284 -12.98565 -12.83958 -12.61618 -12.26839 -11.98118 -11.95411 -11.57580 -11.44424 -11.23136 -11.17529 -10.90062 -10.84462 -10.70827 -10.46311 -10.32548 -10.07602 -9.95008 -9.73614 -9.60568 -9.50997 -9.27375 -8.81601 -8.53284 -8.41763 -6.64456 -5.85636 -3.34494 0.84751 1.60879 2.52866 2.95929 3.07135 3.31679 3.45722 3.50215 3.83403 4.05962 4.32105 4.48758 4.56752 4.61014 4.66656 4.74002 4.93046 5.03302 5.08119 5.10751 5.18426 5.32378 5.37284 5.41486 5.43989 5.52158 5.54123 5.55981 5.66695 5.72894 5.74820 5.86059 5.92674 5.94576 6.02312 6.07434 6.21177 6.23669 6.33010 6.42818 6.50022 6.57502 6.61991 6.82122 6.84979 6.97544 7.08981 7.26707 7.40504 7.96748 8.17395 8.21980 8.46851 9.06039 9.80391 10.25661 11.30121 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004041 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.034213 B = 6927.804344 C = 7973.764743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.069 3.931 3 N -0.361 5.361 4 O 0.094 5.906 5 C -0.032 4.032 6 C -0.240 4.240 7 C 0.580 3.420 8 O -0.485 6.485 9 N -0.597 5.597 10 C 0.081 3.919 11 C -0.132 4.132 12 C -0.121 4.121 13 C -0.138 4.138 14 C 0.154 3.846 15 H 0.072 0.928 16 C -0.110 4.110 17 H 0.118 0.882 18 C -0.087 4.087 19 C -0.129 4.129 20 C 0.151 3.849 21 N -0.605 5.605 22 C -0.257 4.257 23 H 0.081 0.919 24 C 0.024 3.976 25 N -0.919 5.919 26 Si 0.899 3.101 27 H -0.290 1.290 28 H -0.264 1.264 29 H -0.308 1.308 30 C 0.123 3.877 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.234 0.766 35 H 0.074 0.926 36 H 0.093 0.907 37 H 0.074 0.926 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.044 0.956 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.017 0.983 49 H 0.261 0.739 50 H 0.026 0.974 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.143 16.889 12.340 24.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.093 4.093 3 N -0.069 5.069 4 O 0.034 5.966 5 C -0.113 4.113 6 C -0.247 4.247 7 C 0.367 3.633 8 O -0.361 6.361 9 N -0.331 5.331 10 C -0.042 4.042 11 C -0.170 4.170 12 C -0.159 4.159 13 C -0.176 4.176 14 C 0.052 3.948 15 H 0.090 0.910 16 C -0.130 4.130 17 H 0.136 0.864 18 C -0.124 4.124 19 C -0.168 4.168 20 C 0.026 3.974 21 N -0.328 5.328 22 C -0.386 4.386 23 H 0.098 0.902 24 C -0.174 4.174 25 N -0.562 5.562 26 Si 0.731 3.269 27 H -0.218 1.218 28 H -0.190 1.190 29 H -0.237 1.237 30 C -0.003 4.003 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.120 0.880 34 H 0.250 0.750 35 H 0.092 0.908 36 H 0.111 0.889 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.076 0.924 45 H 0.062 0.938 46 H 0.082 0.918 47 H 0.077 0.923 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.043 0.957 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 12.359 17.842 11.995 24.799 hybrid contribution 1.189 -1.296 0.405 1.805 sum 13.548 16.546 12.400 24.720 Atomic orbital electron populations 1.20322 0.84799 1.04969 1.03810 1.24875 0.98981 0.86208 0.99219 1.73658 0.89309 1.23695 1.20241 1.84574 1.21592 1.23217 1.67235 1.26960 1.00578 0.83904 0.99907 1.22611 0.92699 0.96237 1.13201 1.16896 0.84493 0.82675 0.79201 1.90919 1.21531 1.78474 1.45134 1.47878 1.16165 1.07045 1.62006 1.22385 0.85375 1.00779 0.95621 1.21890 1.02121 0.96714 0.96312 1.21551 0.97495 0.95260 1.01577 1.22149 0.96691 1.01929 0.96866 1.21486 0.98833 0.77973 0.96521 0.90966 1.22468 0.89757 0.98575 1.02203 0.86430 1.21572 0.95258 0.99385 0.96163 1.21848 0.95730 0.98714 1.00467 1.20850 0.93291 0.91151 0.92139 1.44175 0.99215 1.65041 1.24412 1.18901 1.13885 1.04589 1.01198 0.90163 1.25472 0.99119 0.95437 0.97420 1.69751 1.40790 1.20740 1.24968 0.86810 0.82920 0.75975 0.81145 1.21760 1.18963 1.23695 1.21673 0.87341 0.93090 0.98222 0.89944 0.90378 0.88026 0.75022 0.90785 0.88910 0.90760 0.91425 0.91791 0.91678 0.90613 0.90316 0.94352 0.92439 0.93757 0.91764 0.92348 0.96536 0.92873 0.95674 0.92022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 10.35 36.01 0.37 -0.50 16 2 C 0.07 0.83 7.58 -79.77 -0.60 0.23 16 3 N -0.36 -4.33 12.01 34.78 0.42 -3.91 16 4 O 0.09 0.93 11.06 18.64 0.21 1.14 16 5 C -0.03 -0.26 10.14 30.41 0.31 0.05 16 6 C -0.24 -2.73 6.09 -102.89 -0.63 -3.36 16 7 C 0.58 7.83 6.60 -12.53 -0.08 7.75 16 8 O -0.48 -8.14 9.22 5.27 0.05 -8.09 16 9 N -0.60 -7.04 2.95 -166.49 -0.49 -7.53 16 10 C 0.08 0.61 5.55 -3.71 -0.02 0.59 16 11 C -0.13 -0.96 6.08 -26.61 -0.16 -1.12 16 12 C -0.12 -1.10 5.88 -26.69 -0.16 -1.26 16 13 C -0.14 -1.72 4.65 -26.61 -0.12 -1.84 16 14 C 0.15 2.21 2.64 -67.60 -0.18 2.03 16 15 H 0.07 1.07 8.13 -51.93 -0.42 0.64 16 16 C -0.11 -2.01 1.57 -90.50 -0.14 -2.15 16 17 H 0.12 2.49 5.60 -53.85 -0.30 2.18 16 18 C -0.09 -1.47 3.48 -26.69 -0.09 -1.57 16 19 C -0.13 -2.36 6.01 -26.83 -0.16 -2.52 16 20 C 0.15 3.22 6.49 -3.93 -0.03 3.20 16 21 N -0.60 -15.00 2.76 -172.57 -0.48 -15.48 16 22 C -0.26 -7.47 10.07 -15.06 -0.15 -7.63 16 23 H 0.08 2.53 8.06 -52.49 -0.42 2.10 16 24 C 0.02 0.72 5.47 -17.43 -0.10 0.62 16 25 N -0.92 -28.98 13.97 55.49 0.78 -28.20 16 26 Si 0.90 22.92 24.30 -169.99 -4.13 18.79 16 27 H -0.29 -7.06 6.64 56.52 0.38 -6.68 16 28 H -0.26 -6.47 5.74 56.52 0.32 -6.15 16 29 H -0.31 -8.00 7.11 56.52 0.40 -7.60 16 30 C 0.12 2.70 3.28 -3.71 -0.01 2.69 16 31 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.10 1.24 7.05 -51.93 -0.37 0.87 16 34 H 0.23 0.88 5.84 -52.49 -0.31 0.58 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.52 3.33 -51.93 -0.17 0.35 16 37 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.97 6.02 -51.93 -0.31 0.66 16 42 H 0.08 1.08 6.88 -51.93 -0.36 0.72 16 43 H 0.04 0.63 6.29 -51.93 -0.33 0.31 16 44 H 0.06 0.95 5.32 -51.93 -0.28 0.67 16 45 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 1.29 8.02 -51.93 -0.42 0.87 16 47 H 0.06 1.26 7.93 -51.93 -0.41 0.84 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 50 H 0.03 0.55 5.00 -51.93 -0.26 0.29 16 51 H 0.06 1.49 4.37 -51.93 -0.23 1.26 16 LS Contribution 367.13 15.07 5.53 5.53 Total: -1.00 -34.19 367.13 -7.70 -41.88 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -7.62 Total: 0.66 kcal Atomic # 6 Polarization: -2.83 SS G_CDS: -1.96 Total: -4.79 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.23 Total: -55.13 kcal Atomic # 8 Polarization: -7.21 SS G_CDS: 0.25 Total: -6.95 kcal Atomic # 14 Polarization: 22.92 SS G_CDS: -4.13 Total: 18.79 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -34.19 -7.70 -41.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053094068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.293 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds