Wall clock time and date at job start Wed Apr 1 2020 05:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30014 * 127.33799 * 2 1 4 4 O 1.20650 * 112.30131 * 180.29651 * 3 2 1 5 5 C 1.33499 * 113.15682 * 359.71893 * 4 3 2 6 6 C 1.37354 * 106.34021 * 359.97438 * 5 4 3 7 7 C 1.47403 * 128.56427 * 179.97438 * 6 5 4 8 8 O 1.21606 * 120.00066 * 203.25087 * 7 6 5 9 9 N 1.34784 * 119.99583 * 23.25888 * 7 6 5 10 10 C 1.46921 * 120.62910 * 1.45061 * 9 7 6 11 11 C 1.53200 * 108.77332 * 126.41709 * 10 9 7 12 12 C 1.53042 * 109.31000 * 54.63310 * 11 10 9 13 13 C 1.53045 * 109.53929 * 298.63161 * 12 11 10 14 14 C 1.46924 * 120.62643 * 181.47416 * 9 7 6 15 15 H 1.09001 * 109.58394 * 113.65406 * 14 9 7 16 16 C 1.53000 * 109.58979 * 353.37380 * 14 9 7 17 17 H 1.08998 * 109.49923 * 51.50946 * 16 14 9 18 18 C 1.53038 * 109.52113 * 291.42911 * 16 14 9 19 19 C 1.53044 * 109.53690 * 178.66346 * 18 16 14 20 20 C 1.52767 * 109.38134 * 61.24333 * 19 18 16 21 21 N 1.46931 * 109.00389 * 305.58717 * 20 19 18 22 22 C 1.36939 * 120.63044 * 233.58455 * 21 20 19 23 23 H 1.07998 * 119.99672 * 37.81859 * 22 21 20 24 24 C 1.38804 * 120.00004 * 217.82761 * 22 21 20 25 25 N 1.31628 * 119.99923 * 179.59941 * 24 22 21 26 26 Si 1.86799 * 120.00092 * 359.59110 * 24 22 21 27 27 H 1.48503 * 109.47067 * 275.06843 * 26 24 22 28 28 H 1.48493 * 109.47090 * 35.07000 * 26 24 22 29 29 H 1.48501 * 109.47102 * 155.07128 * 26 24 22 30 30 C 1.46928 * 118.74022 * 53.31213 * 21 20 19 31 31 H 1.08997 * 109.47710 * 270.15222 * 1 2 3 32 32 H 1.09002 * 109.46875 * 30.14827 * 1 2 3 33 33 H 1.09002 * 109.47386 * 150.14644 * 1 2 3 34 34 H 1.07999 * 126.82775 * 179.97438 * 5 4 3 35 35 H 1.09002 * 109.58579 * 246.19888 * 10 9 7 36 36 H 1.09001 * 109.59482 * 6.63067 * 10 9 7 37 37 H 1.09001 * 109.49559 * 174.58227 * 11 10 9 38 38 H 1.08992 * 109.49440 * 294.68030 * 11 10 9 39 39 H 1.09000 * 109.46346 * 58.65979 * 12 11 10 40 40 H 1.09004 * 109.45673 * 178.61687 * 12 11 10 41 41 H 1.08999 * 109.49738 * 301.42026 * 13 12 11 42 42 H 1.08996 * 109.49679 * 181.31809 * 13 12 11 43 43 H 1.08996 * 109.46168 * 298.68536 * 18 16 14 44 44 H 1.09003 * 109.46241 * 58.64629 * 18 16 14 45 45 H 1.09002 * 109.49972 * 181.31576 * 19 18 16 46 46 H 1.08996 * 109.49963 * 301.38513 * 19 18 16 47 47 H 1.09002 * 109.50854 * 185.70840 * 20 19 18 48 48 H 1.09000 * 109.43482 * 65.41787 * 20 19 18 49 49 H 0.97000 * 119.99812 * 179.97438 * 25 24 22 50 50 H 1.08999 * 109.58812 * 66.42882 * 30 21 20 51 51 H 1.09004 * 109.58508 * 186.85602 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0337 0.0000 4 8 3.4608 0.7207 -0.0058 5 6 3.6493 -0.6009 -0.0047 6 6 2.3991 -1.1696 0.0036 7 6 2.0399 -2.5992 0.0075 8 8 0.9509 -2.9537 -0.4012 9 7 2.9186 -3.5135 0.4643 10 6 4.2257 -3.0977 0.9909 11 6 4.4033 -3.6892 2.3929 12 6 4.2036 -5.2053 2.3316 13 6 2.7835 -5.5156 1.8528 14 6 2.5877 -4.9449 0.4447 15 1 3.2433 -5.4619 -0.2559 16 6 1.1308 -5.1287 0.0149 17 1 0.9529 -4.5816 -0.9109 18 6 0.2035 -4.5956 1.1095 19 6 -1.2531 -4.7488 0.6656 20 6 -1.5635 -6.2285 0.4468 21 7 -0.5835 -6.7889 -0.4937 22 6 -0.9962 -7.4536 -1.6176 23 1 -1.8618 -7.1070 -2.1626 24 6 -0.3020 -8.5726 -2.0563 25 7 -0.7033 -9.2161 -3.1322 26 14 1.2018 -9.1654 -1.1200 27 1 2.3986 -8.4166 -1.5807 28 1 1.0027 -8.9348 0.3333 29 1 1.3996 -10.6160 -1.3686 30 6 0.8476 -6.6175 -0.2084 31 1 -0.3634 0.0027 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3634 -0.8913 -0.5116 34 1 4.5966 -1.1197 -0.0093 35 1 5.0167 -3.4646 0.3367 36 1 4.2687 -2.0099 1.0451 37 1 5.4070 -3.4688 2.7562 38 1 3.6674 -3.2523 3.0678 39 1 4.9238 -5.6387 1.6375 40 1 4.3537 -5.6317 3.3235 41 1 2.0629 -5.0615 2.5329 42 1 2.6345 -6.5951 1.8317 43 1 0.3645 -5.1596 2.0282 44 1 0.4200 -3.5422 1.2876 45 1 -1.9122 -4.3477 1.4356 46 1 -1.4087 -4.2049 -0.2660 47 1 -2.5670 -6.3328 0.0343 48 1 -1.5004 -6.7569 1.3981 49 1 -0.2180 -9.9979 -3.4389 50 1 1.1112 -7.1781 0.6883 51 1 1.4343 -6.9784 -1.0532 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053094068.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:00:45 Heat of formation + Delta-G solvation = 73.881999 kcal Electronic energy + Delta-G solvation = -33485.286668 eV Core-core repulsion = 29389.643652 eV Total energy + Delta-G solvation = -4095.643016 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.97571 -42.06084 -39.12730 -38.33208 -35.80058 -35.12309 -34.32714 -33.62425 -32.56980 -32.47014 -30.05316 -29.73534 -27.15617 -27.03021 -25.17690 -24.74821 -24.20753 -22.86683 -22.28134 -21.65530 -20.94128 -20.04887 -18.80251 -18.76590 -18.35903 -17.95220 -17.18475 -16.87224 -16.53069 -15.98494 -15.84699 -15.59104 -15.37633 -14.96881 -14.88881 -14.75775 -14.59927 -14.33028 -14.27860 -14.11473 -14.04120 -13.92469 -13.56779 -13.51451 -13.12874 -13.09296 -12.66358 -12.45983 -12.30582 -12.27811 -12.06278 -11.89147 -11.63917 -11.58664 -11.54888 -11.35220 -11.10807 -11.07465 -10.87114 -10.67719 -10.55657 -10.00794 -9.47735 -8.68480 -8.16139 -5.63854 0.10484 0.74225 1.26363 1.37250 1.48073 1.68813 2.09112 2.26719 2.40443 3.00415 3.12709 3.27730 3.32088 3.59432 3.81569 3.85268 3.88287 3.95877 4.05580 4.18244 4.22066 4.28572 4.33914 4.37834 4.41193 4.56280 4.57108 4.58371 4.59978 4.65745 4.70736 4.72827 4.75581 4.85107 4.93463 4.99387 5.03835 5.10843 5.15538 5.16275 5.19058 5.26022 5.35248 5.43020 5.46747 5.53328 5.54527 5.87301 5.96014 6.13913 6.42519 6.95341 7.17851 7.23817 7.61107 8.07589 9.02735 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013349 B = 0.004041 C = 0.003511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2097.034213 B = 6927.804344 C = 7973.764743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.052 3.948 3 N -0.379 5.379 4 O 0.100 5.900 5 C 0.007 3.993 6 C -0.269 4.269 7 C 0.577 3.423 8 O -0.531 6.531 9 N -0.593 5.593 10 C 0.073 3.927 11 C -0.127 4.127 12 C -0.118 4.118 13 C -0.136 4.136 14 C 0.158 3.842 15 H 0.069 0.931 16 C -0.100 4.100 17 H 0.086 0.914 18 C -0.074 4.074 19 C -0.119 4.119 20 C 0.147 3.853 21 N -0.621 5.621 22 C -0.255 4.255 23 H 0.036 0.964 24 C -0.036 4.036 25 N -0.967 5.967 26 Si 0.966 3.034 27 H -0.272 1.272 28 H -0.246 1.246 29 H -0.312 1.312 30 C 0.122 3.878 31 H 0.092 0.908 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.281 0.719 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.107 0.893 38 H 0.060 0.940 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.049 0.951 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.038 0.962 47 H 0.043 0.957 48 H 0.033 0.967 49 H 0.262 0.738 50 H 0.037 0.963 51 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.270 18.434 15.384 29.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.110 4.110 3 N -0.087 5.087 4 O 0.040 5.960 5 C -0.074 4.074 6 C -0.276 4.276 7 C 0.366 3.634 8 O -0.410 6.410 9 N -0.326 5.326 10 C -0.047 4.047 11 C -0.165 4.165 12 C -0.156 4.156 13 C -0.174 4.174 14 C 0.054 3.946 15 H 0.086 0.914 16 C -0.120 4.120 17 H 0.104 0.896 18 C -0.111 4.111 19 C -0.158 4.158 20 C 0.022 3.978 21 N -0.346 5.346 22 C -0.385 4.385 23 H 0.053 0.947 24 C -0.230 4.230 25 N -0.613 5.613 26 Si 0.795 3.205 27 H -0.198 1.198 28 H -0.170 1.170 29 H -0.242 1.242 30 C -0.003 4.003 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.099 0.901 34 H 0.295 0.705 35 H 0.116 0.884 36 H 0.132 0.868 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.083 0.917 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.091 0.909 46 H 0.057 0.943 47 H 0.061 0.939 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.055 0.945 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 16.517 19.445 15.086 29.639 hybrid contribution -0.148 -1.694 -0.595 1.801 sum 16.369 17.751 14.490 28.161 Atomic orbital electron populations 1.20268 0.84840 1.04288 1.04241 1.25080 0.99490 0.86779 0.99606 1.73664 0.89961 1.23974 1.21089 1.84558 1.20724 1.24071 1.66607 1.27689 1.00965 0.82828 0.95916 1.22388 0.94074 0.94941 1.16208 1.17194 0.84146 0.83655 0.78449 1.90911 1.23514 1.79293 1.47248 1.47899 1.17578 1.05575 1.61500 1.22772 0.83456 1.02190 0.96296 1.21891 1.03838 0.95002 0.95776 1.21547 0.94919 0.96908 1.02179 1.22105 0.99280 1.00741 0.95248 1.21229 0.95668 0.79920 0.97741 0.91352 1.22190 0.93264 0.94909 1.01609 0.89601 1.21469 0.93652 1.00092 0.95876 1.21726 0.97708 0.96093 1.00235 1.20990 0.91958 0.93092 0.91741 1.44309 1.01223 1.65233 1.23792 1.18765 1.12619 1.04948 1.02141 0.94657 1.26255 1.02798 0.95564 0.98400 1.69919 1.42788 1.21584 1.26983 0.85726 0.79330 0.74877 0.80592 1.19822 1.16983 1.24175 1.21702 0.85083 0.96073 0.97440 0.88984 0.89562 0.90101 0.70453 0.88376 0.86840 0.87469 0.92133 0.91093 0.90529 0.91075 0.91740 0.93237 0.91421 0.90935 0.94306 0.93852 0.94947 0.92900 0.94518 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.71 10.35 71.24 0.74 -0.97 16 2 C 0.05 1.20 7.58 45.16 0.34 1.54 16 3 N -0.38 -8.39 12.01 -44.79 -0.54 -8.93 16 4 O 0.10 1.66 11.06 76.94 0.85 2.51 16 5 C 0.01 0.08 10.14 67.61 0.69 0.77 16 6 C -0.27 -5.52 6.09 -18.74 -0.11 -5.64 16 7 C 0.58 14.78 6.60 86.66 0.57 15.35 16 8 O -0.53 -18.11 9.22 -4.05 -0.04 -18.15 16 9 N -0.59 -12.32 2.95 -798.89 -2.35 -14.67 16 10 C 0.07 0.73 5.55 86.37 0.48 1.21 16 11 C -0.13 -1.16 6.08 30.68 0.19 -0.97 16 12 C -0.12 -1.61 5.88 30.62 0.18 -1.43 16 13 C -0.14 -2.96 4.65 30.67 0.14 -2.82 16 14 C 0.16 4.20 2.64 44.97 0.12 4.32 16 15 H 0.07 1.88 8.13 -2.39 -0.02 1.86 16 16 C -0.10 -3.62 1.57 -10.72 -0.02 -3.64 16 17 H 0.09 3.76 5.60 -32.81 -0.18 3.58 16 18 C -0.07 -2.45 3.48 30.62 0.11 -2.34 16 19 C -0.12 -4.38 6.01 30.53 0.18 -4.20 16 20 C 0.15 6.37 6.49 86.22 0.56 6.93 16 21 N -0.62 -31.66 2.76 -699.90 -1.93 -33.59 16 22 C -0.25 -15.62 10.07 84.03 0.85 -14.78 16 23 H 0.04 2.42 8.06 -2.91 -0.02 2.40 16 24 C -0.04 -2.21 5.47 84.86 0.46 -1.75 16 25 N -0.97 -63.65 13.97 21.65 0.30 -63.35 16 26 Si 0.97 48.07 24.30 68.60 1.67 49.74 16 27 H -0.27 -12.61 6.64 99.48 0.66 -11.95 16 28 H -0.25 -11.35 5.74 99.48 0.57 -10.78 16 29 H -0.31 -15.67 7.11 99.48 0.71 -14.96 16 30 C 0.12 5.35 3.28 86.36 0.28 5.63 16 31 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.08 2.09 7.05 -2.39 -0.02 2.08 16 34 H 0.28 0.34 5.84 -2.91 -0.02 0.32 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.11 0.61 3.33 -2.39 -0.01 0.60 16 37 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.07 1.62 6.02 -2.39 -0.01 1.60 16 42 H 0.06 1.59 6.88 -2.39 -0.02 1.57 16 43 H 0.05 1.53 6.29 -2.39 -0.02 1.52 16 44 H 0.07 2.16 5.32 -2.39 -0.01 2.15 16 45 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.04 1.62 8.02 -2.39 -0.02 1.60 16 47 H 0.04 1.96 7.93 -2.39 -0.02 1.94 16 48 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 49 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 50 H 0.04 1.54 5.00 -2.39 -0.01 1.53 16 51 H 0.04 1.89 4.37 -2.39 -0.01 1.88 16 Total: -1.00 -80.85 367.13 4.33 -76.53 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: 0.61 Total: 12.69 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.76 Total: -2.78 kcal Atomic # 7 Polarization: -116.02 SS G_CDS: -4.52 Total: -120.54 kcal Atomic # 8 Polarization: -16.46 SS G_CDS: 0.81 Total: -15.64 kcal Atomic # 14 Polarization: 48.07 SS G_CDS: 1.67 Total: 49.74 kcal Total: -80.85 4.33 -76.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053094068.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.408 kcal (2) G-P(sol) polarization free energy of solvation -80.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.526 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds