Wall clock time and date at job start Wed Apr 1 2020 04:42:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30176 * 126.80341 * 2 1 4 4 O 1.20921 * 111.60386 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.56752 * 359.76600 * 4 3 2 6 6 C 1.50699 * 126.77701 * 180.28564 * 5 4 3 7 7 C 1.35452 * 106.44868 * 0.37604 * 5 4 3 8 8 C 1.50694 * 128.01074 * 179.90945 * 7 5 4 9 9 H 1.09004 * 109.47217 * 5.47746 * 8 7 5 10 10 C 1.52993 * 109.47604 * 245.47722 * 8 7 5 11 11 C 1.52999 * 109.46999 * 125.47257 * 8 7 5 12 12 C 1.50703 * 109.47076 * 185.00380 * 11 8 7 13 13 O 1.21274 * 120.00127 * 0.02562 * 12 11 8 14 14 N 1.34778 * 119.99895 * 180.02562 * 12 11 8 15 15 C 1.47409 * 125.59091 * 359.97438 * 14 12 11 16 16 C 1.54859 * 104.81886 * 204.43788 * 15 14 12 17 17 C 1.55179 * 101.73080 * 322.76664 * 16 15 14 18 18 H 1.08996 * 113.25780 * 158.95583 * 17 16 15 19 19 C 1.53755 * 108.30904 * 285.38893 * 17 16 15 20 20 N 1.46591 * 108.10924 * 125.22391 * 19 17 16 21 21 C 1.36935 * 125.31186 * 181.28413 * 20 19 17 22 22 H 1.08004 * 119.99781 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00033 * 179.72996 * 21 20 19 24 24 N 1.31615 * 119.99766 * 0.27095 * 23 21 20 25 25 Si 1.86798 * 119.99714 * 180.27568 * 23 21 20 26 26 H 1.48497 * 109.47585 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47177 * 119.99856 * 25 23 21 28 28 H 1.48502 * 109.46962 * 239.99678 * 25 23 21 29 29 C 1.46708 * 109.37296 * 1.55056 * 20 19 17 30 30 C 1.48849 * 125.33927 * 180.02562 * 14 12 11 31 31 H 1.09002 * 111.95094 * 56.53585 * 30 14 12 32 32 H 1.09000 * 109.46789 * 274.89686 * 1 2 3 33 33 H 1.08998 * 109.46756 * 34.89696 * 1 2 3 34 34 H 1.08994 * 109.47076 * 154.89906 * 1 2 3 35 35 H 1.08997 * 109.47154 * 265.01010 * 6 5 4 36 36 H 1.08998 * 109.47184 * 25.01259 * 6 5 4 37 37 H 1.09003 * 109.47075 * 145.01474 * 6 5 4 38 38 H 1.09005 * 109.47246 * 294.22166 * 10 8 7 39 39 H 1.08999 * 109.47459 * 54.21956 * 10 8 7 40 40 H 1.08998 * 109.47521 * 174.22338 * 10 8 7 41 41 H 1.09003 * 109.47041 * 65.00918 * 11 8 7 42 42 H 1.08993 * 109.47609 * 305.00403 * 11 8 7 43 43 H 1.09000 * 110.37199 * 85.59702 * 15 14 12 44 44 H 1.09003 * 110.45904 * 323.31781 * 15 14 12 45 45 H 1.08991 * 110.97676 * 204.66146 * 16 15 14 46 46 H 1.08993 * 110.97809 * 80.87034 * 16 15 14 47 47 H 1.09000 * 109.74529 * 5.55205 * 19 17 16 48 48 H 1.09001 * 109.73277 * 244.89178 * 19 17 16 49 49 H 0.97005 * 119.99895 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.98914 * 101.14070 * 29 20 19 51 51 H 1.09005 * 109.98593 * 222.43714 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0060 6 6 4.9022 -1.3696 0.0143 7 6 2.3540 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0015 9 1 2.8505 -3.2049 0.1055 10 6 1.2544 -2.9244 -1.3138 11 6 1.0115 -2.8568 1.1719 12 6 0.7138 -4.3322 1.2467 13 8 1.2110 -5.0926 0.4434 14 7 -0.1049 -4.8067 2.2064 15 6 -0.7727 -3.9972 3.2417 16 6 -1.0423 -4.9846 4.4038 17 6 -1.4038 -6.2840 3.6363 18 1 -1.2784 -7.1863 4.2347 19 6 -2.8226 -6.1285 3.0647 20 7 -2.7617 -6.3747 1.6209 21 6 -3.8244 -6.3031 0.7602 22 1 -4.8051 -6.0473 1.1333 23 6 -3.6399 -6.5533 -0.5926 24 7 -2.4446 -6.8646 -1.0472 25 14 -5.0881 -6.4481 -1.7678 26 1 -6.3134 -6.0838 -1.0122 27 1 -4.8154 -5.4137 -2.7979 28 1 -5.2867 -7.7635 -2.4277 29 6 -1.3859 -6.7161 1.2431 30 6 -0.4786 -6.2357 2.3903 31 1 0.3969 -6.8730 2.5145 32 1 -0.3633 0.0877 1.0239 33 1 -0.3633 0.8429 -0.5879 34 1 -0.3633 -0.9306 -0.4359 35 1 5.1746 -1.6343 -1.0073 36 1 5.6850 -0.7487 0.4499 37 1 4.7868 -2.2775 0.6064 38 1 0.3107 -2.3818 -1.3704 39 1 1.8900 -2.6361 -2.1511 40 1 1.0604 -3.9961 -1.3571 41 1 0.0828 -2.3060 1.0222 42 1 1.4801 -2.5331 2.1011 43 1 -1.7111 -3.5937 2.8612 44 1 -0.1202 -3.1896 3.5737 45 1 -1.8787 -4.6477 5.0160 46 1 -0.1483 -5.1261 5.0110 47 1 -3.1859 -5.1178 3.2509 48 1 -3.4897 -6.8517 3.5338 49 1 -2.3156 -7.0391 -1.9927 50 1 -1.2910 -7.7946 1.1159 51 1 -1.1163 -6.2066 0.3179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075962233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:23 Heat of formation + Delta-G solvation = 49.319858 kcal Electronic energy + Delta-G solvation = -32414.345791 eV Core-core repulsion = 28317.637681 eV Total energy + Delta-G solvation = -4096.708110 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.97293 -40.07977 -38.25409 -36.28088 -34.71347 -33.84226 -32.48324 -32.11498 -30.78432 -29.15173 -28.81196 -27.78968 -27.50337 -26.14614 -24.68080 -23.86667 -22.41361 -21.06376 -20.35275 -20.12057 -19.42989 -18.36022 -17.69035 -17.12309 -16.76759 -16.45909 -16.00572 -15.06967 -14.94127 -14.57788 -14.30919 -14.03522 -13.74088 -13.62820 -13.32219 -13.30238 -13.23547 -13.00783 -12.88778 -12.80830 -12.61094 -12.50976 -12.23900 -11.97205 -11.82247 -11.57664 -11.41250 -11.22649 -11.16815 -11.05085 -10.98959 -10.75256 -10.54936 -10.46480 -10.28704 -10.10640 -9.84821 -9.79937 -9.66706 -9.22664 -9.11843 -8.60260 -8.07325 -6.79569 -5.63013 -3.04065 1.39532 2.15278 3.03081 3.13336 3.39695 3.41896 3.45135 3.48071 4.12689 4.38516 4.48951 4.64647 4.67349 4.79938 4.91964 5.04734 5.07884 5.14839 5.19602 5.22422 5.28911 5.39878 5.42177 5.48823 5.50286 5.53003 5.58406 5.63959 5.67090 5.73687 5.75997 5.79781 5.87881 5.88331 5.92992 6.03197 6.05654 6.16102 6.25131 6.34368 6.38085 6.50092 6.57873 6.65612 6.71895 6.86571 7.49003 7.66948 7.94886 8.07155 8.23454 8.40999 8.69880 9.24790 9.86193 10.48735 11.41375 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003436 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.577829 B = 8148.221664 C = 9213.486625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.029 3.971 3 N -0.372 5.372 4 O 0.093 5.907 5 C -0.036 4.036 6 C -0.073 4.073 7 C -0.186 4.186 8 C 0.007 3.993 9 H 0.090 0.910 10 C -0.150 4.150 11 C -0.131 4.131 12 C 0.529 3.471 13 O -0.531 6.531 14 N -0.603 5.603 15 C 0.104 3.896 16 C -0.123 4.123 17 C -0.113 4.113 18 H 0.094 0.906 19 C 0.142 3.858 20 N -0.599 5.599 21 C -0.230 4.230 22 H 0.077 0.923 23 C -0.006 4.006 24 N -0.913 5.913 25 Si 0.909 3.091 26 H -0.281 1.281 27 H -0.291 1.291 28 H -0.290 1.290 29 C 0.156 3.844 30 C 0.117 3.883 31 H 0.079 0.921 32 H 0.080 0.920 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.093 0.907 42 H 0.085 0.915 43 H 0.071 0.929 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.024 0.976 48 H 0.019 0.981 49 H 0.252 0.748 50 H 0.021 0.979 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.618 10.634 8.290 17.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.130 4.130 3 N -0.078 5.078 4 O 0.028 5.972 5 C -0.100 4.100 6 C -0.130 4.130 7 C -0.190 4.190 8 C -0.012 4.012 9 H 0.108 0.892 10 C -0.207 4.207 11 C -0.171 4.171 12 C 0.317 3.683 13 O -0.408 6.408 14 N -0.337 5.337 15 C -0.019 4.019 16 C -0.161 4.161 17 C -0.132 4.132 18 H 0.112 0.888 19 C 0.016 3.984 20 N -0.326 5.326 21 C -0.358 4.358 22 H 0.094 0.906 23 C -0.203 4.203 24 N -0.560 5.560 25 Si 0.740 3.260 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.217 1.217 29 C 0.031 3.969 30 C 0.014 3.986 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.111 0.889 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.109 0.891 41 H 0.111 0.889 42 H 0.104 0.896 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.063 0.937 50 H 0.039 0.961 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 11.673 11.560 7.565 18.086 hybrid contribution -1.005 -0.641 -0.519 1.300 sum 10.667 10.919 7.046 16.813 Atomic orbital electron populations 1.20350 0.86064 1.04255 1.03443 1.23421 0.98865 0.88385 1.02303 1.73812 0.89313 1.24009 1.20671 1.84775 1.21666 1.22547 1.68196 1.24222 0.98219 0.83746 1.03772 1.20335 0.89923 0.98587 1.04190 1.21063 0.91479 0.97533 1.08951 1.19170 0.99018 0.87509 0.95540 0.89215 1.21970 0.99442 1.04616 0.94680 1.21748 1.01445 0.94197 0.99696 1.19982 0.78355 0.89991 0.79933 1.90682 1.51811 1.59200 1.39059 1.48819 1.46168 1.08665 1.30063 1.22231 0.97495 0.93995 0.88202 1.22775 1.01507 0.95320 0.96528 1.23060 0.96812 0.97593 0.95762 0.88810 1.21168 0.92801 0.97665 0.86742 1.44184 1.05678 1.81695 1.00994 1.19036 0.87801 1.40914 0.88026 0.90555 1.24800 0.96821 1.01733 0.96905 1.69912 1.19639 1.53089 1.13370 0.86088 0.81436 0.77300 0.81186 1.20589 1.21788 1.21743 1.21688 0.81882 0.97563 0.95805 1.23073 0.96900 0.81397 0.97203 0.90314 0.90110 0.90569 0.89333 0.89390 0.90040 0.88947 0.92928 0.93172 0.89066 0.88869 0.89634 0.91105 0.91536 0.90110 0.91211 0.95817 0.96280 0.93738 0.96103 0.87398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 9.17 36.01 0.33 -0.60 16 2 C 0.03 0.38 7.23 -82.09 -0.59 -0.22 16 3 N -0.37 -5.18 12.07 33.42 0.40 -4.77 16 4 O 0.09 1.18 11.20 17.18 0.19 1.37 16 5 C -0.04 -0.40 7.49 -35.30 -0.26 -0.66 16 6 C -0.07 -0.52 10.12 36.01 0.36 -0.16 16 7 C -0.19 -2.29 4.95 -104.42 -0.52 -2.80 16 8 C 0.01 0.09 2.30 -91.78 -0.21 -0.12 16 9 H 0.09 1.15 7.04 -51.93 -0.37 0.79 16 10 C -0.15 -2.23 8.81 37.15 0.33 -1.90 16 11 C -0.13 -1.74 3.94 -27.88 -0.11 -1.85 16 12 C 0.53 9.24 7.29 -10.98 -0.08 9.16 16 13 O -0.53 -11.10 13.76 5.56 0.08 -11.03 16 14 N -0.60 -10.30 3.09 -160.55 -0.50 -10.79 16 15 C 0.10 1.41 6.23 -2.56 -0.02 1.39 16 16 C -0.12 -1.50 6.31 -24.60 -0.16 -1.65 16 17 C -0.11 -1.79 4.19 -87.87 -0.37 -2.16 16 18 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.14 2.80 6.41 -3.60 -0.02 2.77 16 20 N -0.60 -14.99 3.38 -171.94 -0.58 -15.57 16 21 C -0.23 -6.32 10.25 -15.06 -0.15 -6.48 16 22 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 23 C -0.01 -0.17 5.48 -17.43 -0.10 -0.27 16 24 N -0.91 -27.02 10.16 55.49 0.56 -26.45 16 25 Si 0.91 22.14 29.55 -169.99 -5.02 17.11 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 29 C 0.16 3.84 5.25 -3.43 -0.02 3.82 16 30 C 0.12 2.22 3.75 -64.93 -0.24 1.98 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.09 1.01 5.19 -51.93 -0.27 0.74 16 35 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.09 0.61 7.53 -51.93 -0.39 0.22 16 38 H 0.05 0.77 6.10 -51.93 -0.32 0.45 16 39 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 1.66 6.08 -51.93 -0.32 1.35 16 41 H 0.09 1.21 6.07 -51.93 -0.32 0.89 16 42 H 0.09 0.96 7.84 -51.93 -0.41 0.56 16 43 H 0.07 1.06 7.46 -51.93 -0.39 0.67 16 44 H 0.07 0.71 7.46 -51.93 -0.39 0.32 16 45 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 46 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.46 6.76 -51.93 -0.35 0.10 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.11 3.07 5.41 -51.93 -0.28 2.79 16 LS Contribution 392.19 15.07 5.91 5.91 Total: -1.00 -33.50 392.19 -8.76 -42.26 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: -7.98 Total: 1.72 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: -1.83 Total: 0.25 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.11 Total: -57.59 kcal Atomic # 8 Polarization: -9.93 SS G_CDS: 0.27 Total: -9.66 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.50 -8.76 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075962233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.576 kcal (2) G-P(sol) polarization free energy of solvation -33.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.256 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds