Wall clock time and date at job start Wed Apr 1 2020 04:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30176 * 126.80341 * 2 1 4 4 O 1.20921 * 111.60386 * 179.97438 * 3 2 1 5 5 C 1.34037 * 111.56752 * 359.76600 * 4 3 2 6 6 C 1.50699 * 126.77701 * 180.28564 * 5 4 3 7 7 C 1.35452 * 106.44868 * 0.37604 * 5 4 3 8 8 C 1.50694 * 128.01074 * 179.90945 * 7 5 4 9 9 H 1.09004 * 109.47217 * 5.47746 * 8 7 5 10 10 C 1.52993 * 109.47604 * 245.47722 * 8 7 5 11 11 C 1.52999 * 109.46999 * 125.47257 * 8 7 5 12 12 C 1.50703 * 109.47076 * 185.00380 * 11 8 7 13 13 O 1.21274 * 120.00127 * 0.02562 * 12 11 8 14 14 N 1.34778 * 119.99895 * 180.02562 * 12 11 8 15 15 C 1.47409 * 125.59091 * 359.97438 * 14 12 11 16 16 C 1.54859 * 104.81886 * 204.43788 * 15 14 12 17 17 C 1.55179 * 101.73080 * 322.76664 * 16 15 14 18 18 H 1.08996 * 113.25780 * 158.95583 * 17 16 15 19 19 C 1.53755 * 108.30904 * 285.38893 * 17 16 15 20 20 N 1.46591 * 108.10924 * 125.22391 * 19 17 16 21 21 C 1.36935 * 125.31186 * 181.28413 * 20 19 17 22 22 H 1.08004 * 119.99781 * 0.02562 * 21 20 19 23 23 C 1.38810 * 120.00033 * 179.72996 * 21 20 19 24 24 N 1.31615 * 119.99766 * 0.27095 * 23 21 20 25 25 Si 1.86798 * 119.99714 * 180.27568 * 23 21 20 26 26 H 1.48497 * 109.47585 * 359.97438 * 25 23 21 27 27 H 1.48502 * 109.47177 * 119.99856 * 25 23 21 28 28 H 1.48502 * 109.46962 * 239.99678 * 25 23 21 29 29 C 1.46708 * 109.37296 * 1.55056 * 20 19 17 30 30 C 1.48849 * 125.33927 * 180.02562 * 14 12 11 31 31 H 1.09002 * 111.95094 * 56.53585 * 30 14 12 32 32 H 1.09000 * 109.46789 * 274.89686 * 1 2 3 33 33 H 1.08998 * 109.46756 * 34.89696 * 1 2 3 34 34 H 1.08994 * 109.47076 * 154.89906 * 1 2 3 35 35 H 1.08997 * 109.47154 * 265.01010 * 6 5 4 36 36 H 1.08998 * 109.47184 * 25.01259 * 6 5 4 37 37 H 1.09003 * 109.47075 * 145.01474 * 6 5 4 38 38 H 1.09005 * 109.47246 * 294.22166 * 10 8 7 39 39 H 1.08999 * 109.47459 * 54.21956 * 10 8 7 40 40 H 1.08998 * 109.47521 * 174.22338 * 10 8 7 41 41 H 1.09003 * 109.47041 * 65.00918 * 11 8 7 42 42 H 1.08993 * 109.47609 * 305.00403 * 11 8 7 43 43 H 1.09000 * 110.37199 * 85.59702 * 15 14 12 44 44 H 1.09003 * 110.45904 * 323.31781 * 15 14 12 45 45 H 1.08991 * 110.97676 * 204.66146 * 16 15 14 46 46 H 1.08993 * 110.97809 * 80.87034 * 16 15 14 47 47 H 1.09000 * 109.74529 * 5.55205 * 19 17 16 48 48 H 1.09001 * 109.73277 * 244.89178 * 19 17 16 49 49 H 0.97005 * 119.99895 * 180.02562 * 24 23 21 50 50 H 1.09006 * 109.98914 * 101.14070 * 29 20 19 51 51 H 1.09005 * 109.98593 * 222.43714 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 0.0005 5 6 3.6025 -0.6068 0.0060 6 6 4.9022 -1.3696 0.0143 7 6 2.3540 -1.1321 0.0006 8 6 1.9590 -2.5864 0.0015 9 1 2.8505 -3.2049 0.1055 10 6 1.2544 -2.9244 -1.3138 11 6 1.0115 -2.8568 1.1719 12 6 0.7138 -4.3322 1.2467 13 8 1.2110 -5.0926 0.4434 14 7 -0.1049 -4.8067 2.2064 15 6 -0.7727 -3.9972 3.2417 16 6 -1.0423 -4.9846 4.4038 17 6 -1.4038 -6.2840 3.6363 18 1 -1.2784 -7.1863 4.2347 19 6 -2.8226 -6.1285 3.0647 20 7 -2.7617 -6.3747 1.6209 21 6 -3.8244 -6.3031 0.7602 22 1 -4.8051 -6.0473 1.1333 23 6 -3.6399 -6.5533 -0.5926 24 7 -2.4446 -6.8646 -1.0472 25 14 -5.0881 -6.4481 -1.7678 26 1 -6.3134 -6.0838 -1.0122 27 1 -4.8154 -5.4137 -2.7979 28 1 -5.2867 -7.7635 -2.4277 29 6 -1.3859 -6.7161 1.2431 30 6 -0.4786 -6.2357 2.3903 31 1 0.3969 -6.8730 2.5145 32 1 -0.3633 0.0877 1.0239 33 1 -0.3633 0.8429 -0.5879 34 1 -0.3633 -0.9306 -0.4359 35 1 5.1746 -1.6343 -1.0073 36 1 5.6850 -0.7487 0.4499 37 1 4.7868 -2.2775 0.6064 38 1 0.3107 -2.3818 -1.3704 39 1 1.8900 -2.6361 -2.1511 40 1 1.0604 -3.9961 -1.3571 41 1 0.0828 -2.3060 1.0222 42 1 1.4801 -2.5331 2.1011 43 1 -1.7111 -3.5937 2.8612 44 1 -0.1202 -3.1896 3.5737 45 1 -1.8787 -4.6477 5.0160 46 1 -0.1483 -5.1261 5.0110 47 1 -3.1859 -5.1178 3.2509 48 1 -3.4897 -6.8517 3.5338 49 1 -2.3156 -7.0391 -1.9927 50 1 -1.2910 -7.7946 1.1159 51 1 -1.1163 -6.2066 0.3179 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075962233.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:22 Heat of formation + Delta-G solvation = 29.090404 kcal Electronic energy + Delta-G solvation = -32415.223006 eV Core-core repulsion = 28317.637681 eV Total energy + Delta-G solvation = -4097.585325 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.92090 -41.45054 -39.62675 -37.40518 -36.41467 -34.74432 -33.96411 -33.33705 -32.32506 -30.75788 -29.73950 -28.94133 -28.44800 -27.63945 -26.53529 -24.95650 -23.63081 -22.60004 -21.61588 -21.06569 -20.76740 -19.72264 -18.89242 -18.64448 -18.11798 -17.55951 -17.26946 -16.84344 -16.17008 -16.06471 -15.65421 -15.30724 -15.15025 -14.55144 -14.45078 -14.38060 -14.32728 -14.17482 -13.95605 -13.80159 -13.71491 -13.68016 -13.59647 -13.31151 -13.12012 -12.99295 -12.88263 -12.84801 -12.44941 -12.39408 -12.28695 -12.25686 -12.03746 -11.85012 -11.81779 -11.53955 -11.50440 -11.35504 -10.80403 -10.76810 -10.54829 -10.06180 -9.48502 -8.84207 -7.76987 -5.20020 0.50475 1.19854 1.42923 1.43687 1.54101 1.78647 2.11583 2.24140 2.48060 3.19018 3.34143 3.45450 3.54323 3.65027 3.66750 3.80502 3.82197 3.99826 4.03980 4.17456 4.23984 4.30320 4.35770 4.42562 4.51697 4.54965 4.58198 4.60707 4.66529 4.70499 4.71132 4.78371 4.81029 4.82103 4.89477 4.90562 4.99017 5.01765 5.10339 5.17121 5.19178 5.21816 5.28888 5.33335 5.39380 5.46366 5.49582 5.63427 5.90984 6.32722 6.75751 7.11374 7.31814 7.36356 7.82538 8.43302 9.25187 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011522 B = 0.003436 C = 0.003038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.577829 B = 8148.221664 C = 9213.486625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.025 3.975 3 N -0.396 5.396 4 O 0.086 5.914 5 C -0.020 4.020 6 C -0.075 4.075 7 C -0.203 4.203 8 C 0.019 3.981 9 H 0.092 0.908 10 C -0.145 4.145 11 C -0.119 4.119 12 C 0.518 3.482 13 O -0.576 6.576 14 N -0.606 5.606 15 C 0.097 3.903 16 C -0.106 4.106 17 C -0.101 4.101 18 H 0.116 0.884 19 C 0.135 3.865 20 N -0.619 5.619 21 C -0.236 4.236 22 H 0.084 0.916 23 C -0.066 4.066 24 N -0.945 5.945 25 Si 0.973 3.027 26 H -0.262 1.262 27 H -0.295 1.295 28 H -0.295 1.295 29 C 0.166 3.834 30 C 0.120 3.880 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.101 0.899 38 H 0.048 0.952 39 H 0.058 0.942 40 H 0.051 0.949 41 H 0.098 0.902 42 H 0.117 0.883 43 H 0.055 0.945 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.099 0.901 47 H 0.038 0.962 48 H 0.022 0.978 49 H 0.241 0.759 50 H -0.024 1.024 51 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.052 12.556 11.235 20.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.134 4.134 3 N -0.105 5.105 4 O 0.024 5.976 5 C -0.084 4.084 6 C -0.132 4.132 7 C -0.207 4.207 8 C 0.000 4.000 9 H 0.110 0.890 10 C -0.202 4.202 11 C -0.158 4.158 12 C 0.308 3.692 13 O -0.456 6.456 14 N -0.340 5.340 15 C -0.025 4.025 16 C -0.143 4.143 17 C -0.120 4.120 18 H 0.134 0.866 19 C 0.010 3.990 20 N -0.345 5.345 21 C -0.365 4.365 22 H 0.102 0.898 23 C -0.259 4.259 24 N -0.594 5.594 25 Si 0.802 3.198 26 H -0.186 1.186 27 H -0.222 1.222 28 H -0.222 1.222 29 C 0.040 3.960 30 C 0.016 3.984 31 H 0.098 0.902 32 H 0.116 0.884 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.118 0.882 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.067 0.933 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.116 0.884 42 H 0.135 0.865 43 H 0.073 0.927 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.118 0.882 47 H 0.056 0.944 48 H 0.040 0.960 49 H 0.051 0.949 50 H -0.006 1.006 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.088 13.514 10.578 20.992 hybrid contribution -1.147 -1.282 -1.450 2.250 sum 10.941 12.232 9.127 18.779 Atomic orbital electron populations 1.20400 0.85258 1.03976 1.04524 1.23704 0.99577 0.88423 1.01681 1.73809 0.89816 1.24672 1.22156 1.84755 1.21290 1.23312 1.68249 1.24844 0.99247 0.83177 1.01093 1.20569 0.88625 0.98745 1.05299 1.20903 0.92109 0.96652 1.11022 1.18968 0.98722 0.88217 0.94140 0.89014 1.21864 0.99876 1.01796 0.96690 1.21722 1.01988 0.90837 1.01257 1.20804 0.77754 0.91494 0.79121 1.90668 1.53599 1.60716 1.40618 1.48951 1.45958 1.08206 1.30866 1.22517 0.97398 0.95034 0.87558 1.22812 1.03801 0.91844 0.95884 1.23066 0.93030 1.01083 0.94864 0.86584 1.21442 0.95622 0.98162 0.83725 1.44453 1.05212 1.81418 1.03379 1.19446 0.88891 1.39501 0.88712 0.89838 1.25626 0.99166 1.02380 0.98708 1.70221 1.21718 1.54741 1.12747 0.85083 0.79182 0.76617 0.78932 1.18579 1.22242 1.22248 1.21308 0.83460 0.94514 0.96766 1.22784 0.96367 0.82976 0.96300 0.90176 0.88433 0.90149 0.90138 0.88244 0.87867 0.88080 0.93272 0.92331 0.93019 0.88384 0.86462 0.92667 0.87558 0.87487 0.88247 0.94444 0.96009 0.94897 1.00606 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.77 9.17 71.24 0.65 -1.11 16 2 C 0.02 0.60 7.23 43.58 0.31 0.92 16 3 N -0.40 -10.51 12.07 -49.55 -0.60 -11.10 16 4 O 0.09 2.04 11.20 71.66 0.80 2.84 16 5 C -0.02 -0.40 7.49 25.04 0.19 -0.22 16 6 C -0.08 -0.87 10.12 71.24 0.72 -0.15 16 7 C -0.20 -4.66 4.95 -19.74 -0.10 -4.76 16 8 C 0.02 0.48 2.30 -11.54 -0.03 0.45 16 9 H 0.09 2.29 7.04 -2.38 -0.02 2.28 16 10 C -0.15 -4.49 8.81 71.98 0.63 -3.86 16 11 C -0.12 -2.97 3.94 29.85 0.12 -2.85 16 12 C 0.52 18.12 7.29 87.66 0.64 18.76 16 13 O -0.58 -25.32 13.76 -3.01 -0.04 -25.36 16 14 N -0.61 -20.09 3.09 -780.25 -2.41 -22.51 16 15 C 0.10 2.27 6.23 86.84 0.54 2.81 16 16 C -0.11 -2.05 6.31 31.98 0.20 -1.85 16 17 C -0.10 -2.96 4.19 -9.01 -0.04 -2.99 16 18 H 0.12 2.91 8.14 -2.39 -0.02 2.89 16 19 C 0.14 5.12 6.41 86.62 0.56 5.67 16 20 N -0.62 -31.61 3.38 -697.90 -2.36 -33.96 16 21 C -0.24 -13.29 10.25 84.03 0.86 -12.43 16 22 H 0.08 4.46 7.83 -2.91 -0.02 4.43 16 23 C -0.07 -3.84 5.48 84.86 0.47 -3.37 16 24 N -0.94 -59.37 10.16 21.65 0.22 -59.15 16 25 Si 0.97 46.83 29.55 68.60 2.03 48.86 16 26 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 27 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 28 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 29 C 0.17 8.59 5.25 86.66 0.46 9.05 16 30 C 0.12 4.54 3.75 45.64 0.17 4.71 16 31 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 32 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.08 1.81 5.19 -2.39 -0.01 1.79 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.10 1.06 7.53 -2.39 -0.02 1.04 16 38 H 0.05 1.51 6.10 -2.38 -0.01 1.49 16 39 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 2.03 6.08 -2.39 -0.01 2.01 16 41 H 0.10 2.39 6.07 -2.39 -0.01 2.38 16 42 H 0.12 2.21 7.84 -2.39 -0.02 2.19 16 43 H 0.05 1.49 7.46 -2.39 -0.02 1.47 16 44 H 0.11 1.70 7.46 -2.39 -0.02 1.68 16 45 H 0.11 1.62 7.97 -2.39 -0.02 1.60 16 46 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.04 1.33 6.76 -2.39 -0.02 1.32 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.24 14.96 8.31 -92.70 -0.77 14.19 16 50 H -0.02 -1.40 8.14 -2.38 -0.02 -1.42 16 51 H 0.06 3.87 5.41 -2.38 -0.01 3.86 16 Total: -1.00 -79.66 392.19 4.94 -74.72 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: 0.94 Total: 16.88 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 6.36 Total: 8.78 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -5.15 Total: -126.72 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.76 Total: -22.52 kcal Atomic # 14 Polarization: 46.83 SS G_CDS: 2.03 Total: 48.86 kcal Total: -79.66 4.94 -74.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075962233.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.810 kcal (2) G-P(sol) polarization free energy of solvation -79.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds