Wall clock time and date at job start Wed Apr 1 2020 04:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30170 * 126.80348 * 2 1 4 4 O 1.20922 * 111.60559 * 180.25018 * 3 2 1 5 5 C 1.34044 * 111.56666 * 359.74368 * 4 3 2 6 6 C 1.50698 * 126.77545 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44209 * 0.02562 * 5 4 3 8 8 C 1.50705 * 128.00246 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47040 * 359.97438 * 8 7 5 10 10 C 1.52995 * 109.47000 * 119.99729 * 8 7 5 11 11 C 1.53004 * 109.46935 * 239.99793 * 8 7 5 12 12 C 1.50697 * 109.47016 * 175.00056 * 11 8 7 13 13 O 1.21278 * 119.99969 * 359.97438 * 12 11 8 14 14 N 1.34771 * 119.99868 * 179.97438 * 12 11 8 15 15 C 1.47405 * 125.59281 * 359.97438 * 14 12 11 16 16 C 1.54856 * 104.82053 * 204.44115 * 15 14 12 17 17 C 1.55173 * 101.73122 * 322.76434 * 16 15 14 18 18 H 1.09006 * 113.25674 * 158.95792 * 17 16 15 19 19 C 1.53752 * 108.30987 * 285.39085 * 17 16 15 20 20 N 1.46593 * 108.11037 * 125.22674 * 19 17 16 21 21 C 1.36931 * 125.31110 * 181.28598 * 20 19 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72091 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 C 1.46715 * 109.37493 * 1.54608 * 20 19 17 30 30 C 1.48849 * 125.34052 * 180.02562 * 14 12 11 31 31 H 1.09000 * 111.95427 * 56.52702 * 30 14 12 32 32 H 1.09004 * 109.46874 * 270.17064 * 1 2 3 33 33 H 1.08998 * 109.46801 * 30.16603 * 1 2 3 34 34 H 1.09000 * 109.47034 * 150.17016 * 1 2 3 35 35 H 1.08994 * 109.47008 * 270.00164 * 6 5 4 36 36 H 1.09001 * 109.46998 * 30.00408 * 6 5 4 37 37 H 1.09005 * 109.46730 * 150.00076 * 6 5 4 38 38 H 1.09004 * 109.47256 * 60.00093 * 10 8 7 39 39 H 1.09008 * 109.46775 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.47385 * 300.00007 * 10 8 7 41 41 H 1.08997 * 109.47001 * 54.99850 * 11 8 7 42 42 H 1.09000 * 109.46566 * 295.00047 * 11 8 7 43 43 H 1.08996 * 110.37413 * 85.59649 * 15 14 12 44 44 H 1.09008 * 110.46290 * 323.31930 * 15 14 12 45 45 H 1.09005 * 110.97921 * 204.65632 * 16 15 14 46 46 H 1.09001 * 110.98130 * 80.87577 * 16 15 14 47 47 H 1.09000 * 109.74650 * 5.55385 * 19 17 16 48 48 H 1.09002 * 109.73648 * 244.88750 * 19 17 16 49 49 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.98490 * 101.14040 * 29 20 19 51 51 H 1.09001 * 109.98849 * 222.45203 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6069 -0.0033 6 6 4.9022 -1.3696 -0.0086 7 6 2.3540 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0063 9 1 2.8556 -3.2064 0.0027 10 6 1.1350 -2.8880 1.2596 11 6 1.1238 -2.8911 -1.2389 12 6 0.8326 -4.3684 -1.2993 13 8 1.2522 -5.1051 -0.4320 14 7 0.1059 -4.8709 -2.3170 15 6 -0.4628 -4.0919 -3.4316 16 6 -1.6618 -4.9343 -3.9325 17 6 -1.1173 -6.3795 -3.7806 18 1 -1.9037 -7.1327 -3.7313 19 6 -0.1038 -6.6348 -4.9082 20 7 1.1566 -7.0688 -4.2983 21 6 2.3053 -7.3663 -4.9817 22 1 2.3288 -7.2878 -6.0586 23 6 3.4416 -7.7627 -4.2897 24 7 3.4131 -7.8578 -2.9773 25 14 5.0110 -8.1611 -5.2213 26 1 5.4529 -6.9643 -5.9812 27 1 6.0708 -8.5565 -4.2593 28 1 4.7565 -9.2799 -6.1641 29 6 0.9933 -7.1407 -2.8421 30 6 -0.2518 -6.3050 -2.4937 31 1 -0.7825 -6.7022 -1.6284 32 1 -0.3633 0.0031 1.0277 33 1 -0.3633 0.8885 -0.5164 34 1 -0.3633 -0.8915 -0.5112 35 1 5.2103 -1.5553 -1.0375 36 1 5.6686 -0.7851 0.5003 37 1 4.7677 -2.3202 0.5076 38 1 0.2384 -2.2681 1.2628 39 1 0.8490 -3.9399 1.2619 40 1 1.7300 -2.6709 2.1467 41 1 1.6772 -2.5931 -2.1294 42 1 0.1861 -2.3375 -1.1916 43 1 0.2743 -3.9715 -4.2254 44 1 -0.8039 -3.1178 -3.0808 45 1 -1.8879 -4.7102 -4.9750 46 1 -2.5379 -4.7793 -3.3028 47 1 0.0575 -5.7168 -5.4733 48 1 -0.4795 -7.4141 -5.5713 49 1 4.2070 -8.1351 -2.4938 50 1 0.8486 -8.1762 -2.5341 51 1 1.8708 -6.7237 -2.3477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001075962234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:26 Heat of formation + Delta-G solvation = 50.363597 kcal Electronic energy + Delta-G solvation = -32336.200508 eV Core-core repulsion = 28239.537657 eV Total energy + Delta-G solvation = -4096.662851 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.96444 -40.08618 -38.26856 -36.29157 -34.71265 -33.84150 -32.47311 -32.11939 -30.78605 -29.16191 -28.88159 -27.75772 -27.53581 -26.16384 -24.67525 -23.89587 -22.41338 -21.05073 -20.38410 -20.14415 -19.43771 -18.36197 -17.67145 -17.13111 -16.75317 -16.48632 -15.86019 -15.47538 -14.75262 -14.40797 -14.32276 -14.05745 -13.77878 -13.64881 -13.55700 -13.26106 -13.10442 -13.05405 -12.96133 -12.87015 -12.58294 -12.50188 -12.31689 -11.89267 -11.84491 -11.59151 -11.42143 -11.26456 -11.19624 -11.07342 -11.00407 -10.72892 -10.57220 -10.50259 -10.29649 -10.14725 -9.88293 -9.80118 -9.65665 -9.24245 -9.09120 -8.59435 -8.07301 -6.79640 -5.62579 -3.03788 1.41277 2.13682 3.05111 3.12678 3.40111 3.41863 3.44731 3.46648 4.09390 4.38398 4.49155 4.63987 4.67382 4.79836 4.90111 5.02163 5.04591 5.16625 5.21287 5.26789 5.29465 5.33700 5.39399 5.47170 5.48883 5.52644 5.59036 5.60789 5.64999 5.70541 5.75701 5.79581 5.86523 5.88049 5.90896 6.01336 6.03647 6.09462 6.25116 6.31845 6.34583 6.45842 6.51175 6.59080 6.66276 6.86469 7.48928 7.66197 7.95075 8.06900 8.22751 8.41283 8.69510 9.24954 9.86365 10.49033 11.41705 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003586 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.314700 B = 7805.686103 C = 9365.424591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.026 3.974 3 N -0.372 5.372 4 O 0.092 5.908 5 C -0.028 4.028 6 C -0.077 4.077 7 C -0.190 4.190 8 C 0.005 3.995 9 H 0.094 0.906 10 C -0.149 4.149 11 C -0.130 4.130 12 C 0.529 3.471 13 O -0.530 6.530 14 N -0.603 5.603 15 C 0.104 3.896 16 C -0.123 4.123 17 C -0.113 4.113 18 H 0.094 0.906 19 C 0.142 3.858 20 N -0.599 5.599 21 C -0.231 4.231 22 H 0.076 0.924 23 C -0.006 4.006 24 N -0.914 5.914 25 Si 0.911 3.089 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.156 3.844 30 C 0.117 3.883 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.048 0.952 39 H 0.085 0.915 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.070 0.930 44 H 0.066 0.934 45 H 0.080 0.920 46 H 0.070 0.930 47 H 0.024 0.976 48 H 0.019 0.981 49 H 0.253 0.747 50 H 0.021 0.979 51 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.754 13.874 5.165 16.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.133 4.133 3 N -0.078 5.078 4 O 0.028 5.972 5 C -0.092 4.092 6 C -0.134 4.134 7 C -0.194 4.194 8 C -0.015 4.015 9 H 0.112 0.888 10 C -0.206 4.206 11 C -0.170 4.170 12 C 0.318 3.682 13 O -0.407 6.407 14 N -0.337 5.337 15 C -0.019 4.019 16 C -0.161 4.161 17 C -0.132 4.132 18 H 0.112 0.888 19 C 0.016 3.984 20 N -0.326 5.326 21 C -0.360 4.360 22 H 0.093 0.907 23 C -0.202 4.202 24 N -0.561 5.561 25 Si 0.741 3.259 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.031 3.969 30 C 0.014 3.986 31 H 0.097 0.903 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.113 0.887 38 H 0.067 0.933 39 H 0.104 0.896 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.088 0.912 47 H 0.042 0.958 48 H 0.037 0.963 49 H 0.064 0.936 50 H 0.039 0.961 51 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.458 14.767 5.751 17.515 hybrid contribution 0.725 -0.927 -0.716 1.378 sum -6.733 13.840 5.035 16.194 Atomic orbital electron populations 1.20307 0.86309 1.03675 1.03358 1.23364 0.98735 0.88510 1.02703 1.73804 0.89370 1.24031 1.20643 1.84777 1.21575 1.22655 1.68173 1.24296 0.98389 0.83569 1.02896 1.20395 0.89819 0.98716 1.04484 1.21022 0.91492 0.97420 1.09420 1.19177 0.99851 0.87722 0.94732 0.88789 1.21955 0.98981 1.03771 0.95848 1.21737 1.01550 0.93900 0.99813 1.19969 0.77688 0.89785 0.80800 1.90685 1.50908 1.60756 1.38348 1.48816 1.52652 1.08769 1.23467 1.22228 0.95412 0.94386 0.89889 1.22777 0.96837 0.95040 1.01462 1.23059 0.97591 0.96392 0.96179 0.88792 1.21169 0.86847 0.96906 0.93461 1.44170 1.07085 1.79210 1.02087 1.18951 0.87363 1.39033 0.90607 0.90653 1.24806 0.98050 1.01663 0.95716 1.69894 1.28255 1.52938 1.05004 0.86227 0.83100 0.78131 0.78447 1.21253 1.21557 1.21214 1.21688 0.95020 0.95326 0.84891 1.23073 0.98003 0.81401 0.96087 0.90283 0.90193 0.90658 0.89803 0.89148 0.89960 0.88664 0.93251 0.89621 0.92996 0.89161 0.89321 0.91135 0.91544 0.90112 0.91179 0.95836 0.96276 0.93630 0.96084 0.87438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.73 9.13 36.01 0.33 -0.40 16 2 C 0.03 0.32 7.20 -82.10 -0.59 -0.27 16 3 N -0.37 -5.12 12.07 33.42 0.40 -4.72 16 4 O 0.09 1.21 11.20 17.17 0.19 1.41 16 5 C -0.03 -0.34 7.49 -35.30 -0.26 -0.60 16 6 C -0.08 -0.70 10.17 36.00 0.37 -0.33 16 7 C -0.19 -2.35 4.93 -104.42 -0.51 -2.86 16 8 C 0.00 0.06 2.33 -91.77 -0.21 -0.16 16 9 H 0.09 1.37 6.94 -51.93 -0.36 1.01 16 10 C -0.15 -1.85 8.84 37.15 0.33 -1.52 16 11 C -0.13 -1.73 4.03 -27.88 -0.11 -1.84 16 12 C 0.53 9.25 7.26 -10.99 -0.08 9.17 16 13 O -0.53 -11.10 13.75 5.56 0.08 -11.03 16 14 N -0.60 -10.31 3.09 -160.56 -0.50 -10.81 16 15 C 0.10 1.41 6.23 -2.57 -0.02 1.40 16 16 C -0.12 -1.49 6.31 -24.60 -0.16 -1.65 16 17 C -0.11 -1.80 4.19 -87.88 -0.37 -2.16 16 18 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 19 C 0.14 2.81 6.41 -3.60 -0.02 2.79 16 20 N -0.60 -15.08 3.38 -171.94 -0.58 -15.66 16 21 C -0.23 -6.41 10.25 -15.06 -0.15 -6.56 16 22 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 23 C -0.01 -0.16 5.48 -17.43 -0.10 -0.26 16 24 N -0.91 -27.11 10.16 55.49 0.56 -26.55 16 25 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 26 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 27 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 28 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 29 C 0.16 3.86 5.25 -3.43 -0.02 3.84 16 30 C 0.12 2.23 3.75 -64.93 -0.24 1.98 16 31 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 32 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.69 5.35 -51.93 -0.28 0.41 16 35 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.09 0.85 7.40 -51.93 -0.38 0.47 16 38 H 0.05 0.53 6.75 -51.93 -0.35 0.18 16 39 H 0.09 1.26 5.95 -51.92 -0.31 0.95 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.09 0.96 5.21 -51.93 -0.27 0.69 16 43 H 0.07 1.07 7.46 -51.93 -0.39 0.68 16 44 H 0.07 0.70 7.46 -51.92 -0.39 0.31 16 45 H 0.08 0.86 7.97 -51.93 -0.41 0.44 16 46 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.02 0.46 6.76 -51.93 -0.35 0.10 16 48 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.11 3.08 5.41 -51.93 -0.28 2.80 16 LS Contribution 392.11 15.07 5.91 5.91 Total: -1.00 -33.64 392.11 -8.75 -42.39 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -7.97 Total: 1.41 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: -1.83 Total: 0.56 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.11 Total: -57.74 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.27 Total: -9.62 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.64 -8.75 -42.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075962234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.754 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.390 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds