Wall clock time and date at job start Wed Apr 1 2020 04:42:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30170 * 126.80348 * 2 1 4 4 O 1.20922 * 111.60559 * 180.25018 * 3 2 1 5 5 C 1.34044 * 111.56666 * 359.74368 * 4 3 2 6 6 C 1.50698 * 126.77545 * 179.97438 * 5 4 3 7 7 C 1.35451 * 106.44209 * 0.02562 * 5 4 3 8 8 C 1.50705 * 128.00246 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.47040 * 359.97438 * 8 7 5 10 10 C 1.52995 * 109.47000 * 119.99729 * 8 7 5 11 11 C 1.53004 * 109.46935 * 239.99793 * 8 7 5 12 12 C 1.50697 * 109.47016 * 175.00056 * 11 8 7 13 13 O 1.21278 * 119.99969 * 359.97438 * 12 11 8 14 14 N 1.34771 * 119.99868 * 179.97438 * 12 11 8 15 15 C 1.47405 * 125.59281 * 359.97438 * 14 12 11 16 16 C 1.54856 * 104.82053 * 204.44115 * 15 14 12 17 17 C 1.55173 * 101.73122 * 322.76434 * 16 15 14 18 18 H 1.09006 * 113.25674 * 158.95792 * 17 16 15 19 19 C 1.53752 * 108.30987 * 285.39085 * 17 16 15 20 20 N 1.46593 * 108.11037 * 125.22674 * 19 17 16 21 21 C 1.36931 * 125.31110 * 181.28598 * 20 19 17 22 22 H 1.08002 * 120.00438 * 0.02562 * 21 20 19 23 23 C 1.38817 * 119.99680 * 179.72091 * 21 20 19 24 24 N 1.31614 * 119.99888 * 0.27479 * 23 21 20 25 25 Si 1.86803 * 119.99862 * 180.27671 * 23 21 20 26 26 H 1.48496 * 109.47141 * 59.99751 * 25 23 21 27 27 H 1.48490 * 109.47071 * 180.02562 * 25 23 21 28 28 H 1.48501 * 109.46993 * 300.00028 * 25 23 21 29 29 C 1.46715 * 109.37493 * 1.54608 * 20 19 17 30 30 C 1.48849 * 125.34052 * 180.02562 * 14 12 11 31 31 H 1.09000 * 111.95427 * 56.52702 * 30 14 12 32 32 H 1.09004 * 109.46874 * 270.17064 * 1 2 3 33 33 H 1.08998 * 109.46801 * 30.16603 * 1 2 3 34 34 H 1.09000 * 109.47034 * 150.17016 * 1 2 3 35 35 H 1.08994 * 109.47008 * 270.00164 * 6 5 4 36 36 H 1.09001 * 109.46998 * 30.00408 * 6 5 4 37 37 H 1.09005 * 109.46730 * 150.00076 * 6 5 4 38 38 H 1.09004 * 109.47256 * 60.00093 * 10 8 7 39 39 H 1.09008 * 109.46775 * 179.97438 * 10 8 7 40 40 H 1.09000 * 109.47385 * 300.00007 * 10 8 7 41 41 H 1.08997 * 109.47001 * 54.99850 * 11 8 7 42 42 H 1.09000 * 109.46566 * 295.00047 * 11 8 7 43 43 H 1.08996 * 110.37413 * 85.59649 * 15 14 12 44 44 H 1.09008 * 110.46290 * 323.31930 * 15 14 12 45 45 H 1.09005 * 110.97921 * 204.65632 * 16 15 14 46 46 H 1.09001 * 110.98130 * 80.87577 * 16 15 14 47 47 H 1.09000 * 109.74650 * 5.55385 * 19 17 16 48 48 H 1.09002 * 109.73648 * 244.88750 * 19 17 16 49 49 H 0.97005 * 119.99715 * 179.97438 * 24 23 21 50 50 H 1.09001 * 109.98490 * 101.14040 * 29 20 19 51 51 H 1.09001 * 109.98849 * 222.45203 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0049 5 6 3.6025 -0.6069 -0.0033 6 6 4.9022 -1.3696 -0.0086 7 6 2.3540 -1.1320 0.0028 8 6 1.9591 -2.5864 0.0063 9 1 2.8556 -3.2064 0.0027 10 6 1.1350 -2.8880 1.2596 11 6 1.1238 -2.8911 -1.2389 12 6 0.8326 -4.3684 -1.2993 13 8 1.2522 -5.1051 -0.4320 14 7 0.1059 -4.8709 -2.3170 15 6 -0.4628 -4.0919 -3.4316 16 6 -1.6618 -4.9343 -3.9325 17 6 -1.1173 -6.3795 -3.7806 18 1 -1.9037 -7.1327 -3.7313 19 6 -0.1038 -6.6348 -4.9082 20 7 1.1566 -7.0688 -4.2983 21 6 2.3053 -7.3663 -4.9817 22 1 2.3288 -7.2878 -6.0586 23 6 3.4416 -7.7627 -4.2897 24 7 3.4131 -7.8578 -2.9773 25 14 5.0110 -8.1611 -5.2213 26 1 5.4529 -6.9643 -5.9812 27 1 6.0708 -8.5565 -4.2593 28 1 4.7565 -9.2799 -6.1641 29 6 0.9933 -7.1407 -2.8421 30 6 -0.2518 -6.3050 -2.4937 31 1 -0.7825 -6.7022 -1.6284 32 1 -0.3633 0.0031 1.0277 33 1 -0.3633 0.8885 -0.5164 34 1 -0.3633 -0.8915 -0.5112 35 1 5.2103 -1.5553 -1.0375 36 1 5.6686 -0.7851 0.5003 37 1 4.7677 -2.3202 0.5076 38 1 0.2384 -2.2681 1.2628 39 1 0.8490 -3.9399 1.2619 40 1 1.7300 -2.6709 2.1467 41 1 1.6772 -2.5931 -2.1294 42 1 0.1861 -2.3375 -1.1916 43 1 0.2743 -3.9715 -4.2254 44 1 -0.8039 -3.1178 -3.0808 45 1 -1.8879 -4.7102 -4.9750 46 1 -2.5379 -4.7793 -3.3028 47 1 0.0575 -5.7168 -5.4733 48 1 -0.4795 -7.4141 -5.5713 49 1 4.2070 -8.1351 -2.4938 50 1 0.8486 -8.1762 -2.5341 51 1 1.8708 -6.7237 -2.3477 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001075962234.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:42:25 Heat of formation + Delta-G solvation = 30.039388 kcal Electronic energy + Delta-G solvation = -32337.081832 eV Core-core repulsion = 28239.537657 eV Total energy + Delta-G solvation = -4097.544174 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.90876 -41.45823 -39.63693 -37.40100 -36.41696 -34.74235 -33.96989 -33.34919 -32.32951 -30.75295 -29.69565 -28.94594 -28.47555 -27.64376 -26.53060 -24.94164 -23.63115 -22.58791 -21.62906 -21.08898 -20.77494 -19.72615 -18.89775 -18.63202 -18.12700 -17.57604 -17.16095 -16.88899 -16.51898 -15.73754 -15.57465 -15.30993 -15.23025 -14.67718 -14.46992 -14.38861 -14.34858 -14.03926 -13.92927 -13.86982 -13.78162 -13.70007 -13.50188 -13.28496 -13.11166 -13.00474 -12.89007 -12.78358 -12.44752 -12.34824 -12.28573 -12.24607 -12.12735 -11.85578 -11.81135 -11.56723 -11.47212 -11.35493 -10.79923 -10.75736 -10.55282 -10.07660 -9.48831 -8.84664 -7.76767 -5.20210 0.47105 1.21025 1.43047 1.46344 1.53124 1.77973 2.08914 2.20639 2.48655 3.20795 3.33767 3.45457 3.53609 3.63341 3.66829 3.80668 3.82084 4.00045 4.05556 4.08692 4.24187 4.30503 4.36335 4.41546 4.51491 4.55045 4.57718 4.62359 4.65972 4.66694 4.73051 4.78697 4.80908 4.83209 4.89547 4.94251 4.98258 5.05504 5.15272 5.15365 5.17921 5.19431 5.32875 5.33859 5.38980 5.45685 5.49122 5.62977 5.90541 6.32405 6.75070 7.11204 7.28818 7.35576 7.82396 8.43272 9.25129 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010639 B = 0.003586 C = 0.002989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2631.314700 B = 7805.686103 C = 9365.424591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.030 3.970 3 N -0.396 5.396 4 O 0.080 5.920 5 C -0.027 4.027 6 C -0.078 4.078 7 C -0.202 4.202 8 C 0.012 3.988 9 H 0.069 0.931 10 C -0.142 4.142 11 C -0.117 4.117 12 C 0.519 3.481 13 O -0.576 6.576 14 N -0.606 5.606 15 C 0.096 3.904 16 C -0.105 4.105 17 C -0.101 4.101 18 H 0.117 0.883 19 C 0.135 3.865 20 N -0.619 5.619 21 C -0.241 4.241 22 H 0.083 0.917 23 C -0.066 4.066 24 N -0.946 5.946 25 Si 0.976 3.024 26 H -0.275 1.275 27 H -0.297 1.297 28 H -0.277 1.277 29 C 0.166 3.834 30 C 0.120 3.880 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.103 0.897 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.053 0.947 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.052 0.948 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.101 0.899 47 H 0.036 0.964 48 H 0.022 0.978 49 H 0.242 0.758 50 H -0.023 1.023 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.076 16.117 3.821 19.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.129 4.129 3 N -0.106 5.106 4 O 0.019 5.981 5 C -0.090 4.090 6 C -0.135 4.135 7 C -0.206 4.206 8 C -0.008 4.008 9 H 0.087 0.913 10 C -0.199 4.199 11 C -0.156 4.156 12 C 0.309 3.691 13 O -0.456 6.456 14 N -0.339 5.339 15 C -0.025 4.025 16 C -0.143 4.143 17 C -0.120 4.120 18 H 0.135 0.865 19 C 0.010 3.990 20 N -0.345 5.345 21 C -0.370 4.370 22 H 0.101 0.899 23 C -0.259 4.259 24 N -0.595 5.595 25 Si 0.804 3.196 26 H -0.201 1.201 27 H -0.224 1.224 28 H -0.203 1.203 29 C 0.039 3.961 30 C 0.016 3.984 31 H 0.099 0.901 32 H 0.111 0.889 33 H 0.104 0.896 34 H 0.114 0.886 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.072 0.928 41 H 0.109 0.891 42 H 0.141 0.859 43 H 0.070 0.930 44 H 0.127 0.873 45 H 0.125 0.875 46 H 0.120 0.880 47 H 0.054 0.946 48 H 0.040 0.960 49 H 0.052 0.948 50 H -0.005 1.005 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.806 17.041 4.352 20.137 hybrid contribution 1.460 -1.676 -0.321 2.245 sum -8.347 15.365 4.032 17.945 Atomic orbital electron populations 1.20481 0.84042 1.04767 1.04581 1.23846 1.00147 0.87769 1.01115 1.73800 0.89689 1.24869 1.22209 1.84757 1.21640 1.23027 1.68638 1.24745 0.99317 0.83384 1.01559 1.20510 0.89394 0.98605 1.05008 1.20958 0.91991 0.96954 1.10707 1.19010 0.98963 0.87826 0.95001 0.91282 1.21867 0.99842 1.02486 0.95697 1.21704 1.03161 0.90943 0.99818 1.20771 0.76816 0.91310 0.80224 1.90671 1.52445 1.62242 1.40205 1.48947 1.52580 1.08174 1.24239 1.22520 0.95483 0.96232 0.88308 1.22816 0.96838 0.90888 1.03748 1.23069 0.96664 1.00136 0.92172 0.86515 1.21443 0.85569 0.97072 0.94889 1.44445 1.08447 1.79108 1.02518 1.19387 0.88500 1.37944 0.91218 0.89913 1.25655 1.01328 1.02408 0.96476 1.70211 1.28284 1.54369 1.06609 0.85196 0.79027 0.78285 0.77103 1.20089 1.22378 1.20257 1.21310 0.96257 0.93733 0.84757 1.22787 0.95651 0.82105 0.97859 0.90065 0.88851 0.89617 0.88557 0.88722 0.87835 0.88917 0.90974 0.92169 0.92778 0.89128 0.85889 0.92985 0.87338 0.87536 0.88026 0.94578 0.96025 0.94802 1.00547 0.91951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.22 9.13 71.24 0.65 -0.57 16 2 C 0.03 0.68 7.20 43.58 0.31 1.00 16 3 N -0.40 -10.39 12.07 -49.56 -0.60 -10.99 16 4 O 0.08 2.05 11.20 71.59 0.80 2.85 16 5 C -0.03 -0.62 7.49 25.04 0.19 -0.43 16 6 C -0.08 -1.39 10.17 71.24 0.72 -0.67 16 7 C -0.20 -4.79 4.93 -19.73 -0.10 -4.89 16 8 C 0.01 0.30 2.33 -11.54 -0.03 0.27 16 9 H 0.07 2.11 6.94 -2.39 -0.02 2.09 16 10 C -0.14 -3.45 8.84 71.98 0.64 -2.82 16 11 C -0.12 -2.94 4.03 29.85 0.12 -2.82 16 12 C 0.52 18.14 7.26 87.66 0.64 18.77 16 13 O -0.58 -25.32 13.75 -3.02 -0.04 -25.37 16 14 N -0.61 -20.06 3.09 -780.28 -2.41 -22.48 16 15 C 0.10 2.26 6.23 86.84 0.54 2.81 16 16 C -0.11 -2.02 6.31 31.97 0.20 -1.82 16 17 C -0.10 -2.95 4.19 -9.02 -0.04 -2.99 16 18 H 0.12 2.91 8.14 -2.38 -0.02 2.89 16 19 C 0.14 5.14 6.41 86.62 0.56 5.70 16 20 N -0.62 -31.81 3.38 -697.89 -2.36 -34.17 16 21 C -0.24 -13.65 10.25 84.04 0.86 -12.79 16 22 H 0.08 4.43 7.83 -2.91 -0.02 4.40 16 23 C -0.07 -3.83 5.48 84.86 0.47 -3.36 16 24 N -0.95 -59.36 10.16 21.65 0.22 -59.14 16 25 Si 0.98 46.63 29.55 68.60 2.03 48.66 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.83 16 27 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 28 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 29 C 0.17 8.61 5.25 86.66 0.46 9.06 16 30 C 0.12 4.54 3.75 45.64 0.17 4.72 16 31 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 32 H 0.09 1.18 8.12 -2.38 -0.02 1.16 16 33 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 1.16 5.35 -2.39 -0.01 1.15 16 35 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 36 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.09 1.71 7.40 -2.38 -0.02 1.70 16 38 H 0.07 1.39 6.75 -2.39 -0.02 1.37 16 39 H 0.06 1.81 5.95 -2.38 -0.01 1.80 16 40 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 41 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 42 H 0.12 2.20 5.21 -2.39 -0.01 2.19 16 43 H 0.05 1.44 7.46 -2.39 -0.02 1.42 16 44 H 0.11 1.68 7.46 -2.38 -0.02 1.66 16 45 H 0.11 1.61 7.97 -2.38 -0.02 1.59 16 46 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 47 H 0.04 1.30 6.76 -2.39 -0.02 1.28 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.24 15.02 8.31 -92.70 -0.77 14.25 16 50 H -0.02 -1.37 8.14 -2.39 -0.02 -1.39 16 51 H 0.06 3.82 5.41 -2.39 -0.01 3.81 16 Total: -1.00 -79.77 392.11 4.94 -74.83 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.94 Total: 16.63 kcal Atomic # 6 Polarization: 2.81 SS G_CDS: 6.36 Total: 9.17 kcal Atomic # 7 Polarization: -121.63 SS G_CDS: -5.15 Total: -126.78 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: 0.76 Total: -22.52 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.66 kcal Total: -79.77 4.94 -74.83 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001075962234.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.870 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds