Wall clock time and date at job start Wed Apr 1 2020 04:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30021 * 127.33848 * 2 1 4 4 O 1.20652 * 112.30149 * 180.27165 * 3 2 1 5 5 C 1.33494 * 113.15883 * 359.73494 * 4 3 2 6 6 C 1.50708 * 126.82874 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47242 * 300.00090 * 6 5 4 8 8 C 1.52999 * 109.46888 * 60.00440 * 6 5 4 9 9 C 1.37359 * 106.34307 * 359.97438 * 5 4 3 10 10 C 1.47396 * 128.56724 * 179.97438 * 9 5 4 11 11 O 1.21603 * 120.00612 * 89.99908 * 10 9 5 12 12 N 1.34779 * 119.99699 * 269.99671 * 10 9 5 13 13 C 1.46503 * 120.00222 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94398 * 333.10759 * 13 12 10 15 15 C 1.53950 * 113.65952 * 104.50431 * 13 12 10 16 16 C 1.53952 * 87.37851 * 89.78430 * 15 13 12 17 17 H 1.09000 * 113.66213 * 139.16450 * 16 15 13 18 18 N 1.46500 * 113.66221 * 270.12719 * 16 15 13 19 19 C 1.36935 * 120.00012 * 255.49650 * 18 16 15 20 20 H 1.07994 * 120.00262 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00052 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99992 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47164 * 89.99893 * 23 21 19 25 25 H 1.48499 * 109.47333 * 209.99861 * 23 21 19 26 26 H 1.48501 * 109.47035 * 330.00146 * 23 21 19 27 27 C 1.52909 * 86.78252 * 24.68886 * 16 15 13 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 16 15 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 16 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 16 15 31 31 H 1.08999 * 109.47206 * 270.15156 * 1 2 3 32 32 H 1.08997 * 109.46937 * 30.14599 * 1 2 3 33 33 H 1.08997 * 109.47014 * 150.14630 * 1 2 3 34 34 H 1.09001 * 109.46775 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47129 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47491 * 299.99984 * 7 6 5 37 37 H 1.09001 * 109.47157 * 60.00330 * 7 6 5 38 38 H 1.09002 * 109.47463 * 59.99476 * 8 6 5 39 39 H 1.09001 * 109.46945 * 179.97438 * 8 6 5 40 40 H 1.09001 * 109.47205 * 299.99482 * 8 6 5 41 41 H 0.97001 * 119.99924 * 0.02562 * 12 10 9 42 42 H 1.09002 * 113.58302 * 335.14031 * 15 13 12 43 43 H 1.09004 * 113.57731 * 204.42204 * 15 13 12 44 44 H 0.96999 * 119.99833 * 75.48978 * 18 16 15 45 45 H 0.97000 * 119.99946 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.66316 * 323.85618 * 28 27 16 47 47 H 1.08997 * 113.66044 * 94.91866 * 28 27 16 48 48 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 49 49 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 50 50 H 1.09004 * 113.66330 * 265.09006 * 30 27 16 51 51 H 1.09001 * 113.65876 * 36.13855 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3247 -0.0101 7 6 5.7582 -0.9392 -1.2642 8 6 5.7716 -0.9350 1.2343 9 6 2.3991 -1.1697 0.0036 10 6 2.0400 -2.5992 0.0074 11 8 1.8978 -3.1877 1.0620 12 7 1.8693 -3.2542 -1.1581 13 6 1.5129 -4.6752 -1.1545 14 1 1.8551 -5.1968 -0.2607 15 6 0.0364 -4.9427 -1.4987 16 6 0.4679 -5.0201 -2.9745 17 1 -0.0235 -5.8170 -3.5328 18 7 0.4269 -3.7300 -3.6675 19 6 -0.5857 -3.4579 -4.5483 20 1 -1.3542 -4.1940 -4.7318 21 6 -0.6248 -2.2353 -5.2046 22 7 0.3110 -1.3375 -4.9799 23 14 -2.0057 -1.8643 -6.4067 24 1 -3.1361 -1.2303 -5.6817 25 1 -1.5115 -0.9397 -7.4584 26 1 -2.4674 -3.1278 -7.0355 27 6 1.8569 -5.3982 -2.4590 28 6 3.1169 -5.0461 -3.2506 29 6 3.7560 -6.2985 -2.6233 30 6 2.3297 -6.8524 -2.4542 31 1 -0.3633 0.0027 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3633 -0.8913 -0.5115 34 1 4.7962 -2.4006 -0.0078 35 1 6.7144 -1.4624 -1.2682 36 1 5.1880 -1.2167 -2.1506 37 1 5.9332 0.1367 -1.2669 38 1 5.2109 -1.2097 2.1278 39 1 6.7274 -1.4589 1.2302 40 1 5.9466 0.1408 1.2316 41 1 1.9830 -2.7849 -1.9994 42 1 -0.6216 -4.1016 -1.2804 43 1 -0.3391 -5.8869 -1.1042 44 1 1.1169 -3.0687 -3.5024 45 1 0.2838 -0.4833 -5.4387 46 1 2.9884 -5.1150 -4.3307 47 1 3.5841 -4.1127 -2.9368 48 1 4.2626 -6.1026 -1.6782 49 1 4.3672 -6.8728 -3.3194 50 1 2.1680 -7.3619 -1.5042 51 1 1.9798 -7.4289 -3.3105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078649358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:51 Heat of formation + Delta-G solvation = 69.286823 kcal Electronic energy + Delta-G solvation = -32708.402314 eV Core-core repulsion = 28612.560036 eV Total energy + Delta-G solvation = -4095.842278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -44.71271 -40.68279 -38.71189 -36.13112 -35.32502 -34.37267 -33.67324 -32.31739 -30.80727 -29.80510 -28.58824 -27.35815 -25.62404 -25.31921 -24.30521 -23.87715 -22.93119 -22.49967 -20.46952 -20.11617 -19.34379 -18.47187 -17.59541 -17.23620 -17.17056 -16.20287 -15.80829 -15.49371 -15.27574 -14.89586 -14.58229 -14.19742 -14.16108 -13.69430 -13.46138 -13.21054 -13.11515 -13.08489 -12.96863 -12.66045 -12.52491 -12.38248 -12.15350 -11.98741 -11.60015 -11.56889 -11.46448 -11.44859 -11.40683 -10.98812 -10.92679 -10.84450 -10.72877 -10.25989 -10.18051 -10.04289 -9.83698 -9.71481 -9.67356 -9.42607 -9.27695 -8.91356 -8.62576 -7.08411 -5.89284 -3.18125 1.43934 2.10694 2.58444 2.93494 3.36897 3.41924 3.44139 3.45536 4.21522 4.31390 4.46859 4.67680 4.70815 4.81814 4.85330 4.90312 4.94732 5.07306 5.09549 5.20821 5.27730 5.36675 5.43827 5.47048 5.57309 5.62202 5.65819 5.70217 5.72363 5.79637 5.81524 5.83806 5.90008 5.91102 5.95721 6.02146 6.04713 6.07915 6.08856 6.19676 6.25699 6.28059 6.35784 6.56431 6.64094 6.68267 6.87901 7.02083 7.62691 7.76482 8.28804 8.38772 8.39060 9.40428 9.95058 10.28727 11.32877 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.004735 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.554497 B = 5911.965770 C = 7593.353326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.066 3.934 3 N -0.358 5.358 4 O 0.098 5.902 5 C 0.020 3.980 6 C -0.014 4.014 7 C -0.151 4.151 8 C -0.148 4.148 9 C -0.242 4.242 10 C 0.603 3.397 11 O -0.537 6.537 12 N -0.684 5.684 13 C 0.150 3.850 14 H 0.092 0.908 15 C -0.185 4.185 16 C 0.180 3.820 17 H 0.065 0.935 18 N -0.700 5.700 19 C -0.242 4.242 20 H 0.073 0.927 21 C -0.008 4.008 22 N -0.931 5.931 23 Si 0.907 3.093 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.282 1.282 27 C -0.130 4.130 28 C -0.116 4.116 29 C -0.141 4.141 30 C -0.104 4.104 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.410 0.590 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.379 0.621 45 H 0.256 0.744 46 H 0.088 0.912 47 H 0.060 0.940 48 H 0.074 0.926 49 H 0.062 0.938 50 H 0.065 0.935 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.371 -3.967 9.183 14.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 N -0.065 5.065 4 O 0.037 5.963 5 C -0.044 4.044 6 C -0.033 4.033 7 C -0.208 4.208 8 C -0.205 4.205 9 C -0.249 4.249 10 C 0.387 3.613 11 O -0.414 6.414 12 N -0.335 5.335 13 C 0.045 3.955 14 H 0.110 0.890 15 C -0.228 4.228 16 C 0.067 3.933 17 H 0.083 0.917 18 N -0.339 5.339 19 C -0.373 4.373 20 H 0.091 0.909 21 C -0.204 4.204 22 N -0.579 5.579 23 Si 0.738 3.262 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.207 1.207 27 C -0.132 4.132 28 C -0.153 4.153 29 C -0.179 4.179 30 C -0.142 4.142 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.107 0.893 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.249 0.751 42 H 0.091 0.909 43 H 0.096 0.904 44 H 0.214 0.786 45 H 0.066 0.934 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.081 0.919 50 H 0.084 0.916 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 9.929 -3.024 9.762 14.249 hybrid contribution -0.769 0.057 -1.018 1.277 sum 9.160 -2.967 8.744 13.006 Atomic orbital electron populations 1.20231 0.85100 1.04952 1.03241 1.24713 0.98605 0.86326 1.00012 1.73586 0.89065 1.23311 1.20533 1.84475 1.21552 1.22364 1.67958 1.24530 0.96650 0.83920 0.99280 1.19863 0.87106 0.98555 0.97803 1.21901 1.00052 1.02618 0.96228 1.21873 0.99887 1.02486 0.96300 1.21908 0.92789 0.95395 1.14850 1.16822 0.76602 0.83820 0.84033 1.90776 1.51436 1.68011 1.31219 1.45725 1.68550 1.10700 1.08552 1.21509 0.96752 0.80270 0.96976 0.88991 1.24300 0.95375 1.01424 1.01668 1.21043 0.91722 0.89871 0.90638 0.91720 1.42079 1.30314 1.12625 1.48896 1.19245 1.02703 0.99266 1.16108 0.90931 1.24712 0.98579 0.96632 1.00516 1.69622 1.34615 1.07386 1.46260 0.86199 0.81536 0.77775 0.80709 1.21700 1.21786 1.20722 1.23431 0.97021 0.96665 0.96119 1.22513 0.95388 0.97206 1.00219 1.22859 0.96213 0.98116 1.00670 1.22488 0.95709 0.94095 1.01883 0.90043 0.89843 0.89261 0.88153 0.91125 0.91518 0.91573 0.91973 0.91145 0.91627 0.75141 0.90924 0.90381 0.78591 0.93384 0.89381 0.92089 0.90776 0.91875 0.91587 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.49 36.00 0.38 -0.82 16 2 C 0.07 1.13 7.59 -79.76 -0.61 0.52 16 3 N -0.36 -6.14 12.01 34.78 0.42 -5.72 16 4 O 0.10 1.52 11.06 18.65 0.21 1.72 16 5 C 0.02 0.29 6.06 -34.62 -0.21 0.08 16 6 C -0.01 -0.15 3.33 -91.77 -0.31 -0.46 16 7 C -0.15 -1.46 9.18 37.15 0.34 -1.12 16 8 C -0.15 -1.34 9.18 37.16 0.34 -1.00 16 9 C -0.24 -4.07 6.24 -102.89 -0.64 -4.71 16 10 C 0.60 10.60 7.30 -12.53 -0.09 10.51 16 11 O -0.54 -10.61 16.75 5.27 0.09 -10.52 16 12 N -0.68 -11.57 4.72 -54.37 -0.26 -11.83 16 13 C 0.15 2.41 4.09 -67.40 -0.28 2.13 16 14 H 0.09 1.47 7.54 -51.93 -0.39 1.08 16 15 C -0.19 -3.17 7.68 -25.75 -0.20 -3.37 16 16 C 0.18 3.30 4.35 -67.48 -0.29 3.01 16 17 H 0.06 1.20 8.12 -51.93 -0.42 0.78 16 18 N -0.70 -15.86 4.98 -52.99 -0.26 -16.12 16 19 C -0.24 -6.27 9.98 -15.06 -0.15 -6.42 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 22 N -0.93 -26.22 13.06 55.49 0.72 -25.50 16 23 Si 0.91 21.54 29.55 -169.99 -5.02 16.52 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 27 C -0.13 -1.95 0.77 -154.63 -0.12 -2.07 16 28 C -0.12 -1.68 7.19 -26.28 -0.19 -1.87 16 29 C -0.14 -1.67 8.08 -25.75 -0.21 -1.88 16 30 C -0.10 -1.27 7.84 -26.28 -0.21 -1.48 16 31 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 34 H 0.10 1.13 7.70 -51.93 -0.40 0.73 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.41 7.48 5.92 -40.82 -0.24 7.24 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.08 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.38 8.91 5.42 -40.82 -0.22 8.69 16 45 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 47 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 48 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 51 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 LS Contribution 416.91 15.07 6.28 6.28 Total: -1.00 -29.90 416.91 -8.73 -38.63 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: -8.38 Total: 15.80 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -2.53 Total: -9.26 kcal Atomic # 7 Polarization: -59.79 SS G_CDS: 0.62 Total: -59.17 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.29 Total: -8.80 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -29.90 -8.73 -38.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078649358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.917 kcal (2) G-P(sol) polarization free energy of solvation -29.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.630 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds