Wall clock time and date at job start Wed Apr 1 2020 04:39:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30021 * 127.33848 * 2 1 4 4 O 1.20652 * 112.30149 * 180.27165 * 3 2 1 5 5 C 1.33494 * 113.15883 * 359.73494 * 4 3 2 6 6 C 1.50708 * 126.82874 * 179.97438 * 5 4 3 7 7 C 1.52993 * 109.47242 * 300.00090 * 6 5 4 8 8 C 1.52999 * 109.46888 * 60.00440 * 6 5 4 9 9 C 1.37359 * 106.34307 * 359.97438 * 5 4 3 10 10 C 1.47396 * 128.56724 * 179.97438 * 9 5 4 11 11 O 1.21603 * 120.00612 * 89.99908 * 10 9 5 12 12 N 1.34779 * 119.99699 * 269.99671 * 10 9 5 13 13 C 1.46503 * 120.00222 * 179.97438 * 12 10 9 14 14 H 1.09001 * 112.94398 * 333.10759 * 13 12 10 15 15 C 1.53950 * 113.65952 * 104.50431 * 13 12 10 16 16 C 1.53952 * 87.37851 * 89.78430 * 15 13 12 17 17 H 1.09000 * 113.66213 * 139.16450 * 16 15 13 18 18 N 1.46500 * 113.66221 * 270.12719 * 16 15 13 19 19 C 1.36935 * 120.00012 * 255.49650 * 18 16 15 20 20 H 1.07994 * 120.00262 * 0.02562 * 19 18 16 21 21 C 1.38814 * 120.00052 * 179.97438 * 19 18 16 22 22 N 1.31621 * 119.99992 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00154 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47164 * 89.99893 * 23 21 19 25 25 H 1.48499 * 109.47333 * 209.99861 * 23 21 19 26 26 H 1.48501 * 109.47035 * 330.00146 * 23 21 19 27 27 C 1.52909 * 86.78252 * 24.68886 * 16 15 13 28 28 C 1.52907 * 121.13536 * 209.38099 * 27 16 15 29 29 C 1.53958 * 86.78205 * 209.38733 * 28 27 16 30 30 C 1.52915 * 121.13447 * 100.82251 * 27 16 15 31 31 H 1.08999 * 109.47206 * 270.15156 * 1 2 3 32 32 H 1.08997 * 109.46937 * 30.14599 * 1 2 3 33 33 H 1.08997 * 109.47014 * 150.14630 * 1 2 3 34 34 H 1.09001 * 109.46775 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.47129 * 179.97438 * 7 6 5 36 36 H 1.08995 * 109.47491 * 299.99984 * 7 6 5 37 37 H 1.09001 * 109.47157 * 60.00330 * 7 6 5 38 38 H 1.09002 * 109.47463 * 59.99476 * 8 6 5 39 39 H 1.09001 * 109.46945 * 179.97438 * 8 6 5 40 40 H 1.09001 * 109.47205 * 299.99482 * 8 6 5 41 41 H 0.97001 * 119.99924 * 0.02562 * 12 10 9 42 42 H 1.09002 * 113.58302 * 335.14031 * 15 13 12 43 43 H 1.09004 * 113.57731 * 204.42204 * 15 13 12 44 44 H 0.96999 * 119.99833 * 75.48978 * 18 16 15 45 45 H 0.97000 * 119.99946 * 179.97438 * 22 21 19 46 46 H 1.08994 * 113.66316 * 323.85618 * 28 27 16 47 47 H 1.08997 * 113.66044 * 94.91866 * 28 27 16 48 48 H 1.09000 * 113.57861 * 270.13288 * 29 28 27 49 49 H 1.08990 * 113.65166 * 139.34938 * 29 28 27 50 50 H 1.09004 * 113.66330 * 265.09006 * 30 27 16 51 51 H 1.09001 * 113.65876 * 36.13855 * 30 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2956 1.0338 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0041 6 6 4.9712 -1.3247 -0.0101 7 6 5.7582 -0.9392 -1.2642 8 6 5.7716 -0.9350 1.2343 9 6 2.3991 -1.1697 0.0036 10 6 2.0400 -2.5992 0.0074 11 8 1.8978 -3.1877 1.0620 12 7 1.8693 -3.2542 -1.1581 13 6 1.5129 -4.6752 -1.1545 14 1 1.8551 -5.1968 -0.2607 15 6 0.0364 -4.9427 -1.4987 16 6 0.4679 -5.0201 -2.9745 17 1 -0.0235 -5.8170 -3.5328 18 7 0.4269 -3.7300 -3.6675 19 6 -0.5857 -3.4579 -4.5483 20 1 -1.3542 -4.1940 -4.7318 21 6 -0.6248 -2.2353 -5.2046 22 7 0.3110 -1.3375 -4.9799 23 14 -2.0057 -1.8643 -6.4067 24 1 -3.1361 -1.2303 -5.6817 25 1 -1.5115 -0.9397 -7.4584 26 1 -2.4674 -3.1278 -7.0355 27 6 1.8569 -5.3982 -2.4590 28 6 3.1169 -5.0461 -3.2506 29 6 3.7560 -6.2985 -2.6233 30 6 2.3297 -6.8524 -2.4542 31 1 -0.3633 0.0027 1.0276 32 1 -0.3633 0.8887 -0.5161 33 1 -0.3633 -0.8913 -0.5115 34 1 4.7962 -2.4006 -0.0078 35 1 6.7144 -1.4624 -1.2682 36 1 5.1880 -1.2167 -2.1506 37 1 5.9332 0.1367 -1.2669 38 1 5.2109 -1.2097 2.1278 39 1 6.7274 -1.4589 1.2302 40 1 5.9466 0.1408 1.2316 41 1 1.9830 -2.7849 -1.9994 42 1 -0.6216 -4.1016 -1.2804 43 1 -0.3391 -5.8869 -1.1042 44 1 1.1169 -3.0687 -3.5024 45 1 0.2838 -0.4833 -5.4387 46 1 2.9884 -5.1150 -4.3307 47 1 3.5841 -4.1127 -2.9368 48 1 4.2626 -6.1026 -1.6782 49 1 4.3672 -6.8728 -3.3194 50 1 2.1680 -7.3619 -1.5042 51 1 1.9798 -7.4289 -3.3105 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078649358.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:50 Heat of formation + Delta-G solvation = 53.184943 kcal Electronic energy + Delta-G solvation = -32709.100544 eV Core-core repulsion = 28612.560036 eV Total energy + Delta-G solvation = -4096.540508 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.99858 -42.00463 -40.08603 -37.07490 -36.68526 -35.67306 -35.36748 -33.86739 -32.09258 -31.52918 -29.86912 -28.10291 -26.86238 -26.79309 -25.66026 -25.29526 -24.01085 -23.94462 -21.83787 -21.38727 -20.56755 -19.85440 -19.02132 -18.88530 -18.45693 -17.49129 -17.03528 -16.80937 -16.60465 -16.24889 -16.05087 -15.69892 -15.31228 -15.06705 -14.82154 -14.55263 -14.44315 -14.29374 -14.15159 -13.89727 -13.88689 -13.35032 -13.23236 -13.14791 -13.06923 -12.89327 -12.73139 -12.60357 -12.54910 -12.37229 -12.26885 -12.18420 -11.95611 -11.87616 -11.83804 -11.47028 -11.28330 -11.04781 -10.99570 -10.82691 -10.65956 -10.51029 -10.00212 -8.97004 -7.94883 -5.21418 0.22890 0.77768 1.19367 1.46679 1.47855 1.55208 1.72311 2.15089 2.55169 3.00191 3.10689 3.36604 3.40348 3.56859 3.66169 3.73030 3.83068 3.94976 3.96756 4.03337 4.05163 4.12180 4.22068 4.30121 4.36699 4.46002 4.52455 4.59648 4.61531 4.66882 4.76741 4.77603 4.86324 4.88597 4.89566 4.97587 4.98485 5.02926 5.05006 5.11292 5.16497 5.20555 5.23270 5.28715 5.31253 5.48670 5.55512 5.62587 5.65977 6.26999 6.34896 6.96849 7.12684 7.35001 8.09672 8.32722 9.27238 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008330 B = 0.004735 C = 0.003687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3360.554497 B = 5911.965770 C = 7593.353326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.049 3.951 3 N -0.374 5.374 4 O 0.101 5.899 5 C 0.038 3.962 6 C -0.015 4.015 7 C -0.147 4.147 8 C -0.144 4.144 9 C -0.274 4.274 10 C 0.610 3.390 11 O -0.561 6.561 12 N -0.680 5.680 13 C 0.151 3.849 14 H 0.102 0.898 15 C -0.179 4.179 16 C 0.162 3.838 17 H 0.064 0.936 18 N -0.709 5.709 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.064 4.064 22 N -0.961 5.961 23 Si 0.962 3.038 24 H -0.293 1.293 25 H -0.299 1.299 26 H -0.271 1.271 27 C -0.119 4.119 28 C -0.123 4.123 29 C -0.125 4.125 30 C -0.094 4.094 31 H 0.101 0.899 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.048 0.952 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.070 0.930 41 H 0.404 0.596 42 H 0.042 0.958 43 H 0.105 0.895 44 H 0.373 0.627 45 H 0.249 0.751 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.084 0.916 49 H 0.080 0.920 50 H 0.085 0.915 51 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.880 -5.769 9.774 16.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 N -0.081 5.081 4 O 0.040 5.960 5 C -0.026 4.026 6 C -0.034 4.034 7 C -0.204 4.204 8 C -0.201 4.201 9 C -0.281 4.281 10 C 0.395 3.605 11 O -0.440 6.440 12 N -0.330 5.330 13 C 0.047 3.953 14 H 0.119 0.881 15 C -0.221 4.221 16 C 0.052 3.948 17 H 0.082 0.918 18 N -0.348 5.348 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.257 4.257 22 N -0.611 5.611 23 Si 0.793 3.207 24 H -0.220 1.220 25 H -0.226 1.226 26 H -0.196 1.196 27 C -0.121 4.121 28 C -0.161 4.161 29 C -0.162 4.162 30 C -0.132 4.132 31 H 0.120 0.880 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.118 0.882 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.241 0.759 42 H 0.061 0.939 43 H 0.124 0.876 44 H 0.207 0.793 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.071 0.929 48 H 0.103 0.897 49 H 0.099 0.901 50 H 0.104 0.896 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.429 -4.880 10.363 16.181 hybrid contribution -1.234 0.564 -1.185 1.801 sum 10.195 -4.315 9.178 14.381 Atomic orbital electron populations 1.20233 0.84470 1.04189 1.04326 1.25032 0.99398 0.86676 1.00214 1.73558 0.89563 1.23603 1.21365 1.84444 1.20977 1.22894 1.67678 1.25225 0.97546 0.83330 0.96469 1.20117 0.85696 0.97974 0.99646 1.21905 1.00786 1.03219 0.94531 1.21879 1.00540 1.03195 0.94480 1.21961 0.93809 0.95053 1.17290 1.16845 0.75957 0.84001 0.83684 1.90747 1.52735 1.68666 1.31862 1.45757 1.68056 1.11156 1.08015 1.21571 0.95965 0.79901 0.97911 0.88052 1.24235 0.95657 1.01618 1.00551 1.21296 0.94670 0.88017 0.90826 0.91836 1.42164 1.29467 1.14173 1.48979 1.19569 1.02932 0.98933 1.15527 0.90763 1.25347 1.00727 0.96937 1.02671 1.69760 1.36318 1.07461 1.47571 0.85303 0.79106 0.77581 0.78728 1.22035 1.22566 1.19568 1.23361 0.95011 0.99039 0.94723 1.22511 0.95748 0.98590 0.99222 1.22795 0.96215 0.96032 1.01157 1.22537 0.95376 0.91997 1.03316 0.88039 0.89416 0.91052 0.88240 0.88281 0.93285 0.91254 0.92937 0.88392 0.91136 0.75937 0.93931 0.87633 0.79341 0.94247 0.91115 0.92854 0.89705 0.90116 0.89621 0.88799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.39 10.49 71.23 0.75 -1.64 16 2 C 0.05 1.72 7.59 45.16 0.34 2.06 16 3 N -0.37 -13.03 12.01 -44.77 -0.54 -13.57 16 4 O 0.10 3.13 11.06 76.98 0.85 3.98 16 5 C 0.04 1.11 6.06 25.48 0.15 1.27 16 6 C -0.01 -0.31 3.33 -11.54 -0.04 -0.35 16 7 C -0.15 -2.61 9.18 71.98 0.66 -1.95 16 8 C -0.14 -2.29 9.18 71.98 0.66 -1.63 16 9 C -0.27 -9.38 6.24 -18.74 -0.12 -9.50 16 10 C 0.61 21.72 7.30 86.65 0.63 22.36 16 11 O -0.56 -22.17 16.75 -4.04 -0.07 -22.23 16 12 N -0.68 -23.30 4.72 -444.20 -2.10 -25.40 16 13 C 0.15 4.71 4.09 45.33 0.19 4.90 16 14 H 0.10 3.03 7.54 -2.39 -0.02 3.01 16 15 C -0.18 -6.01 7.68 31.23 0.24 -5.78 16 16 C 0.16 5.91 4.35 45.28 0.20 6.10 16 17 H 0.06 2.31 8.12 -2.39 -0.02 2.29 16 18 N -0.71 -32.69 4.98 -321.56 -1.60 -34.29 16 19 C -0.24 -12.46 9.98 84.03 0.84 -11.62 16 20 H 0.07 3.79 7.83 -2.91 -0.02 3.76 16 21 C -0.06 -3.49 5.50 84.86 0.47 -3.03 16 22 N -0.96 -55.66 13.06 21.65 0.28 -55.38 16 23 Si 0.96 44.96 29.55 68.60 2.03 46.99 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 26 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 27 C -0.12 -3.41 0.77 -52.26 -0.04 -3.45 16 28 C -0.12 -3.44 7.19 30.89 0.22 -3.22 16 29 C -0.12 -2.55 8.08 31.23 0.25 -2.30 16 30 C -0.09 -2.01 7.84 30.89 0.24 -1.76 16 31 H 0.10 2.75 8.14 -2.39 -0.02 2.73 16 32 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 34 H 0.10 2.11 7.70 -2.39 -0.02 2.09 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.03 16 37 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 41 H 0.40 15.21 5.92 -92.71 -0.55 14.66 16 42 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 44 H 0.37 18.07 5.42 -92.71 -0.50 17.57 16 45 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 46 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 47 H 0.05 1.56 7.51 -2.39 -0.02 1.54 16 48 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 49 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 50 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 51 H 0.09 1.90 8.14 -2.39 -0.02 1.89 16 Total: -1.00 -65.72 416.91 4.39 -61.33 By element: Atomic # 1 Polarization: 48.22 SS G_CDS: -0.11 Total: 48.11 kcal Atomic # 6 Polarization: -15.17 SS G_CDS: 5.65 Total: -9.53 kcal Atomic # 7 Polarization: -124.69 SS G_CDS: -3.95 Total: -128.64 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: 0.78 Total: -18.25 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -65.72 4.39 -61.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078649358.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.512 kcal (2) G-P(sol) polarization free energy of solvation -65.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.790 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.327 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds