Wall clock time and date at job start Wed Apr 1 2020 04:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30011 * 127.33686 * 2 1 4 4 O 1.20658 * 112.30477 * 180.02562 * 3 2 1 5 5 C 1.33494 * 113.15495 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.82556 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47504 * 300.02657 * 6 5 4 8 8 C 1.52997 * 109.47168 * 60.03065 * 6 5 4 9 9 C 1.37353 * 106.34239 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56629 * 180.02562 * 9 5 4 11 11 O 1.21608 * 120.00370 * 90.00232 * 10 9 5 12 12 N 1.34780 * 120.00221 * 269.99715 * 10 9 5 13 13 C 1.46501 * 120.00299 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.88449 * 23.65168 * 13 12 10 15 15 C 1.53950 * 113.66268 * 252.18891 * 13 12 10 16 16 C 1.53947 * 87.29530 * 220.79317 * 15 13 12 17 17 H 1.09000 * 113.66321 * 270.25962 * 16 15 13 18 18 N 1.46503 * 113.74375 * 139.21511 * 16 15 13 19 19 C 1.36942 * 119.99521 * 107.77497 * 18 16 15 20 20 H 1.08003 * 120.00322 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99630 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00162 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00249 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47313 * 89.99909 * 23 21 19 25 25 H 1.48501 * 109.46964 * 210.00269 * 23 21 19 26 26 H 1.48500 * 109.47025 * 329.99828 * 23 21 19 27 27 C 1.52902 * 113.66098 * 155.00453 * 13 12 10 28 28 C 1.52911 * 121.14180 * 13.64931 * 27 13 12 29 29 C 1.53942 * 86.78246 * 209.38393 * 28 27 13 30 30 C 1.52915 * 121.13332 * 265.08767 * 27 13 12 31 31 H 1.08999 * 109.47663 * 269.97796 * 1 2 3 32 32 H 1.09003 * 109.46896 * 29.98124 * 1 2 3 33 33 H 1.08997 * 109.47289 * 149.97049 * 1 2 3 34 34 H 1.09008 * 109.46665 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.46890 * 300.00438 * 7 6 5 36 36 H 1.08996 * 109.47028 * 59.99972 * 7 6 5 37 37 H 1.09002 * 109.47313 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.47271 * 59.99882 * 8 6 5 39 39 H 1.09002 * 109.47436 * 179.97438 * 8 6 5 40 40 H 1.08996 * 109.47243 * 299.99958 * 8 6 5 41 41 H 0.96996 * 119.99701 * 0.02562 * 12 10 9 42 42 H 1.08999 * 113.58083 * 335.40230 * 15 13 12 43 43 H 1.09006 * 113.57765 * 106.19014 * 15 13 12 44 44 H 0.96998 * 120.00444 * 287.77494 * 18 16 15 45 45 H 0.96994 * 120.00534 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.65850 * 323.85416 * 28 27 13 47 47 H 1.09000 * 113.66040 * 94.90751 * 28 27 13 48 48 H 1.09007 * 113.58043 * 270.12754 * 29 28 27 49 49 H 1.08997 * 113.65272 * 139.35254 * 29 28 27 50 50 H 1.09003 * 113.66306 * 265.08910 * 30 27 13 51 51 H 1.08987 * 113.66314 * 36.15327 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6493 -0.6008 -0.0004 6 6 4.9712 -1.3246 -0.0014 7 6 5.7641 -0.9367 -1.2511 8 6 5.7657 -0.9372 1.2474 9 6 2.3991 -1.1696 -0.0003 10 6 2.0400 -2.5991 0.0004 11 8 1.8917 -3.1884 1.0538 12 7 1.8760 -3.2534 -1.1665 13 6 1.5196 -4.6744 -1.1659 14 1 1.0258 -4.9871 -0.2459 15 6 2.6714 -5.6004 -1.5969 16 6 1.6280 -6.4084 -2.3897 17 1 1.1655 -7.2099 -1.8137 18 7 2.0990 -6.8503 -3.7047 19 6 2.3894 -8.1713 -3.9195 20 1 2.2716 -8.8872 -3.1194 21 6 2.8351 -8.5901 -5.1655 22 7 3.1147 -9.8596 -5.3719 23 14 3.0382 -7.3521 -6.5495 24 1 4.4153 -6.7972 -6.5192 25 1 2.8039 -8.0240 -7.8530 26 1 2.0569 -6.2511 -6.3767 27 6 0.7962 -5.1262 -2.4349 28 6 0.7677 -4.2458 -3.6849 29 6 -0.5898 -4.8967 -4.0066 30 6 -0.7308 -5.1762 -2.4993 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8897 -0.5143 34 1 4.7962 -2.4005 -0.0015 35 1 5.1980 -1.2127 -2.1407 36 1 5.9390 0.1391 -1.2510 37 1 6.7200 -1.4606 -1.2520 38 1 5.2008 -1.2136 2.1377 39 1 6.7216 -1.4610 1.2469 40 1 5.9406 0.1386 1.2475 41 1 1.9946 -2.7835 -2.0067 42 1 3.4132 -5.1095 -2.2268 43 1 3.1171 -6.1553 -0.7712 44 1 2.2052 -6.2074 -4.4231 45 1 3.4259 -10.1524 -6.2427 46 1 0.7011 -3.1798 -3.4676 47 1 1.5493 -4.4846 -4.4061 48 1 -0.5079 -5.7996 -4.6118 49 1 -1.3306 -4.1958 -4.3913 50 1 -1.1462 -6.1583 -2.2735 51 1 -1.2184 -4.3717 -1.9490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001078649359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:54 Heat of formation + Delta-G solvation = 70.282974 kcal Electronic energy + Delta-G solvation = -31791.318402 eV Core-core repulsion = 27695.519320 eV Total energy + Delta-G solvation = -4095.799082 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.12771 -40.79707 -39.06025 -36.39053 -35.07127 -34.81333 -34.29209 -32.56224 -31.20221 -30.42198 -29.07873 -27.57178 -25.76052 -25.66839 -24.32686 -24.04574 -23.23299 -21.91412 -20.71148 -20.58862 -19.66567 -18.57157 -18.14635 -17.93218 -17.03542 -16.55472 -16.36899 -15.89141 -15.22845 -15.04797 -14.80434 -14.54127 -14.19227 -13.97833 -13.78172 -13.55030 -13.53120 -13.21874 -13.16205 -12.77274 -12.68458 -12.58421 -12.28576 -12.06357 -11.88344 -11.86817 -11.70229 -11.68019 -11.60146 -11.19139 -11.15140 -10.95162 -10.88992 -10.41650 -10.29711 -10.13975 -10.10432 -9.98775 -9.87201 -9.66303 -9.57273 -8.94920 -8.86323 -7.34431 -5.84640 -3.20722 1.05458 1.65135 2.25871 2.55491 3.15377 3.28764 3.31389 3.38676 3.82286 3.90986 4.43985 4.46527 4.50601 4.58626 4.62169 4.70964 4.74100 4.84260 4.90065 5.03442 5.05956 5.08268 5.15432 5.25249 5.26392 5.30076 5.34708 5.41788 5.45952 5.47287 5.57889 5.62094 5.68657 5.73462 5.77273 5.79448 5.82777 5.83793 5.88237 6.03793 6.13087 6.17583 6.23932 6.38079 6.43096 6.64009 6.69966 6.85090 7.40354 7.91850 7.96192 8.04368 8.34935 9.12145 9.84225 10.03616 11.33519 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003123 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.201752 B = 8962.366260 C = 9859.512569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.054 3.946 3 N -0.357 5.357 4 O 0.098 5.902 5 C 0.029 3.971 6 C -0.018 4.018 7 C -0.150 4.150 8 C -0.149 4.149 9 C -0.250 4.250 10 C 0.598 3.402 11 O -0.526 6.526 12 N -0.699 5.699 13 C 0.130 3.870 14 H 0.115 0.885 15 C -0.173 4.173 16 C 0.200 3.800 17 H 0.091 0.909 18 N -0.730 5.730 19 C -0.248 4.248 20 H 0.092 0.908 21 C 0.008 3.992 22 N -0.931 5.931 23 Si 0.880 3.120 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.276 1.276 27 C -0.123 4.123 28 C -0.120 4.120 29 C -0.132 4.132 30 C -0.124 4.124 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.064 0.936 41 H 0.400 0.600 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.363 0.637 45 H 0.260 0.740 46 H 0.074 0.926 47 H 0.070 0.930 48 H 0.088 0.912 49 H 0.059 0.941 50 H 0.071 0.929 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.364 21.222 9.476 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.109 4.109 3 N -0.064 5.064 4 O 0.037 5.963 5 C -0.035 4.035 6 C -0.037 4.037 7 C -0.207 4.207 8 C -0.206 4.206 9 C -0.257 4.257 10 C 0.382 3.618 11 O -0.402 6.402 12 N -0.349 5.349 13 C 0.026 3.974 14 H 0.133 0.867 15 C -0.216 4.216 16 C 0.088 3.912 17 H 0.109 0.891 18 N -0.370 5.370 19 C -0.378 4.378 20 H 0.110 0.890 21 C -0.188 4.188 22 N -0.578 5.578 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.202 1.202 27 C -0.125 4.125 28 C -0.157 4.157 29 C -0.170 4.170 30 C -0.161 4.161 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.092 0.908 40 H 0.084 0.916 41 H 0.236 0.764 42 H 0.098 0.902 43 H 0.086 0.914 44 H 0.198 0.802 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.089 0.911 48 H 0.107 0.893 49 H 0.078 0.922 50 H 0.090 0.910 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.624 21.808 10.210 24.134 hybrid contribution 0.173 0.321 -1.483 1.527 sum -1.451 22.129 8.727 23.832 Atomic orbital electron populations 1.20219 0.85151 1.04119 1.03975 1.24736 0.98547 0.86539 1.01034 1.73618 0.89168 1.23365 1.20216 1.84504 1.21381 1.22568 1.67831 1.24685 0.96928 0.83635 0.98263 1.19953 0.86926 0.98833 0.98017 1.21897 1.00358 1.02542 0.95916 1.21878 1.00210 1.02467 0.96093 1.22008 0.92728 0.95518 1.15432 1.16886 0.76948 0.83650 0.84365 1.90826 1.50221 1.67919 1.31255 1.45977 1.69460 1.11667 1.07771 1.22385 0.97909 0.78193 0.98944 0.86682 1.24253 0.98059 0.98369 1.00877 1.21028 0.91201 0.91264 0.87737 0.89086 1.42681 1.79041 1.07074 1.08185 1.19132 1.37257 0.83655 0.97759 0.88997 1.24668 1.01245 0.95649 0.97253 1.69691 1.51189 1.13679 1.23248 0.86637 0.78012 0.81255 0.83123 1.21059 1.21651 1.20239 1.23657 0.95569 0.99283 0.94032 1.22466 0.98809 0.97602 0.96860 1.22749 0.96319 1.01122 0.96796 1.22688 0.95168 1.01728 0.96532 0.89577 0.89921 0.89789 0.87702 0.91879 0.91608 0.90745 0.91858 0.90818 0.91645 0.76429 0.90201 0.91440 0.80233 0.92968 0.90803 0.91092 0.89295 0.92225 0.91040 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.49 36.00 0.38 -0.28 16 2 C 0.05 0.61 7.59 -79.77 -0.61 0.00 16 3 N -0.36 -4.32 12.01 34.78 0.42 -3.90 16 4 O 0.10 1.11 11.06 18.65 0.21 1.32 16 5 C 0.03 0.30 6.06 -34.63 -0.21 0.09 16 6 C -0.02 -0.15 3.33 -91.77 -0.31 -0.46 16 7 C -0.15 -1.06 9.18 37.16 0.34 -0.72 16 8 C -0.15 -1.09 9.18 37.16 0.34 -0.75 16 9 C -0.25 -2.96 6.24 -102.90 -0.64 -3.61 16 10 C 0.60 7.91 7.30 -12.53 -0.09 7.82 16 11 O -0.53 -8.80 16.71 5.27 0.09 -8.71 16 12 N -0.70 -8.28 5.25 -54.46 -0.29 -8.56 16 13 C 0.13 1.75 4.12 -67.48 -0.28 1.47 16 14 H 0.12 1.64 7.46 -51.93 -0.39 1.26 16 15 C -0.17 -2.69 7.68 -25.75 -0.20 -2.89 16 16 C 0.20 3.50 4.36 -67.48 -0.29 3.20 16 17 H 0.09 1.65 8.10 -51.93 -0.42 1.23 16 18 N -0.73 -15.82 5.13 -52.99 -0.27 -16.09 16 19 C -0.25 -6.62 10.45 -15.06 -0.16 -6.78 16 20 H 0.09 2.64 8.06 -52.48 -0.42 2.22 16 21 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 22 N -0.93 -28.37 13.97 55.49 0.78 -27.60 16 23 Si 0.88 21.10 27.73 -169.99 -4.71 16.38 16 24 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.28 -6.13 6.52 56.52 0.37 -5.76 16 27 C -0.12 -1.71 1.06 -154.71 -0.16 -1.87 16 28 C -0.12 -1.57 6.77 -26.29 -0.18 -1.75 16 29 C -0.13 -1.78 8.08 -25.75 -0.21 -1.99 16 30 C -0.12 -1.59 7.84 -26.28 -0.21 -1.79 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.10 0.99 7.71 -51.92 -0.40 0.59 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.40 4.15 7.02 -40.82 -0.29 3.86 16 42 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 43 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.36 7.73 3.78 -40.82 -0.15 7.58 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.24 16 46 H 0.07 0.80 7.03 -51.93 -0.37 0.43 16 47 H 0.07 1.06 6.42 -51.93 -0.33 0.73 16 48 H 0.09 1.42 8.14 -51.93 -0.42 0.99 16 49 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.07 0.84 8.14 -51.94 -0.42 0.42 16 LS Contribution 413.85 15.07 6.24 6.24 Total: -1.00 -31.87 413.85 -8.40 -40.27 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: -8.28 Total: 10.82 kcal Atomic # 6 Polarization: -7.59 SS G_CDS: -2.57 Total: -10.17 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: 0.64 Total: -56.15 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.29 Total: -7.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -4.71 Total: 16.38 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -31.87 -8.40 -40.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078649359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.555 kcal (2) G-P(sol) polarization free energy of solvation -31.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds