Wall clock time and date at job start Wed Apr 1 2020 04:39:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30011 * 127.33686 * 2 1 4 4 O 1.20658 * 112.30477 * 180.02562 * 3 2 1 5 5 C 1.33494 * 113.15495 * 359.97438 * 4 3 2 6 6 C 1.50702 * 126.82556 * 179.97438 * 5 4 3 7 7 C 1.52996 * 109.47504 * 300.02657 * 6 5 4 8 8 C 1.52997 * 109.47168 * 60.03065 * 6 5 4 9 9 C 1.37353 * 106.34239 * 0.02562 * 5 4 3 10 10 C 1.47393 * 128.56629 * 180.02562 * 9 5 4 11 11 O 1.21608 * 120.00370 * 90.00232 * 10 9 5 12 12 N 1.34780 * 120.00221 * 269.99715 * 10 9 5 13 13 C 1.46501 * 120.00299 * 179.97438 * 12 10 9 14 14 H 1.08999 * 112.88449 * 23.65168 * 13 12 10 15 15 C 1.53950 * 113.66268 * 252.18891 * 13 12 10 16 16 C 1.53947 * 87.29530 * 220.79317 * 15 13 12 17 17 H 1.09000 * 113.66321 * 270.25962 * 16 15 13 18 18 N 1.46503 * 113.74375 * 139.21511 * 16 15 13 19 19 C 1.36942 * 119.99521 * 107.77497 * 18 16 15 20 20 H 1.08003 * 120.00322 * 359.97438 * 19 18 16 21 21 C 1.38810 * 119.99630 * 179.97438 * 19 18 16 22 22 N 1.31623 * 120.00162 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00249 * 359.97438 * 21 19 18 24 24 H 1.48496 * 109.47313 * 89.99909 * 23 21 19 25 25 H 1.48501 * 109.46964 * 210.00269 * 23 21 19 26 26 H 1.48500 * 109.47025 * 329.99828 * 23 21 19 27 27 C 1.52902 * 113.66098 * 155.00453 * 13 12 10 28 28 C 1.52911 * 121.14180 * 13.64931 * 27 13 12 29 29 C 1.53942 * 86.78246 * 209.38393 * 28 27 13 30 30 C 1.52915 * 121.13332 * 265.08767 * 27 13 12 31 31 H 1.08999 * 109.47663 * 269.97796 * 1 2 3 32 32 H 1.09003 * 109.46896 * 29.98124 * 1 2 3 33 33 H 1.08997 * 109.47289 * 149.97049 * 1 2 3 34 34 H 1.09008 * 109.46665 * 180.02562 * 6 5 4 35 35 H 1.09003 * 109.46890 * 300.00438 * 7 6 5 36 36 H 1.08996 * 109.47028 * 59.99972 * 7 6 5 37 37 H 1.09002 * 109.47313 * 180.02562 * 7 6 5 38 38 H 1.09005 * 109.47271 * 59.99882 * 8 6 5 39 39 H 1.09002 * 109.47436 * 179.97438 * 8 6 5 40 40 H 1.08996 * 109.47243 * 299.99958 * 8 6 5 41 41 H 0.96996 * 119.99701 * 0.02562 * 12 10 9 42 42 H 1.08999 * 113.58083 * 335.40230 * 15 13 12 43 43 H 1.09006 * 113.57765 * 106.19014 * 15 13 12 44 44 H 0.96998 * 120.00444 * 287.77494 * 18 16 15 45 45 H 0.96994 * 120.00534 * 179.97438 * 22 21 19 46 46 H 1.09000 * 113.65850 * 323.85416 * 28 27 13 47 47 H 1.09000 * 113.66040 * 94.90751 * 28 27 13 48 48 H 1.09007 * 113.58043 * 270.12754 * 29 28 27 49 49 H 1.08997 * 113.65272 * 139.35254 * 29 28 27 50 50 H 1.09003 * 113.66306 * 265.08910 * 30 27 13 51 51 H 1.08987 * 113.66314 * 36.15327 * 30 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2954 1.0337 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6493 -0.6008 -0.0004 6 6 4.9712 -1.3246 -0.0014 7 6 5.7641 -0.9367 -1.2511 8 6 5.7657 -0.9372 1.2474 9 6 2.3991 -1.1696 -0.0003 10 6 2.0400 -2.5991 0.0004 11 8 1.8917 -3.1884 1.0538 12 7 1.8760 -3.2534 -1.1665 13 6 1.5196 -4.6744 -1.1659 14 1 1.0258 -4.9871 -0.2459 15 6 2.6714 -5.6004 -1.5969 16 6 1.6280 -6.4084 -2.3897 17 1 1.1655 -7.2099 -1.8137 18 7 2.0990 -6.8503 -3.7047 19 6 2.3894 -8.1713 -3.9195 20 1 2.2716 -8.8872 -3.1194 21 6 2.8351 -8.5901 -5.1655 22 7 3.1147 -9.8596 -5.3719 23 14 3.0382 -7.3521 -6.5495 24 1 4.4153 -6.7972 -6.5192 25 1 2.8039 -8.0240 -7.8530 26 1 2.0569 -6.2511 -6.3767 27 6 0.7962 -5.1262 -2.4349 28 6 0.7677 -4.2458 -3.6849 29 6 -0.5898 -4.8967 -4.0066 30 6 -0.7308 -5.1762 -2.4993 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5136 33 1 -0.3634 -0.8897 -0.5143 34 1 4.7962 -2.4005 -0.0015 35 1 5.1980 -1.2127 -2.1407 36 1 5.9390 0.1391 -1.2510 37 1 6.7200 -1.4606 -1.2520 38 1 5.2008 -1.2136 2.1377 39 1 6.7216 -1.4610 1.2469 40 1 5.9406 0.1386 1.2475 41 1 1.9946 -2.7835 -2.0067 42 1 3.4132 -5.1095 -2.2268 43 1 3.1171 -6.1553 -0.7712 44 1 2.2052 -6.2074 -4.4231 45 1 3.4259 -10.1524 -6.2427 46 1 0.7011 -3.1798 -3.4676 47 1 1.5493 -4.4846 -4.4061 48 1 -0.5079 -5.7996 -4.6118 49 1 -1.3306 -4.1958 -4.3913 50 1 -1.1462 -6.1583 -2.2735 51 1 -1.2184 -4.3717 -1.9490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001078649359.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:39:53 Heat of formation + Delta-G solvation = 51.308853 kcal Electronic energy + Delta-G solvation = -31792.141182 eV Core-core repulsion = 27695.519320 eV Total energy + Delta-G solvation = -4096.621861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -45.97976 -41.99350 -40.18521 -37.08068 -36.36729 -35.83576 -35.64705 -34.08094 -32.50587 -31.80236 -29.79970 -28.13216 -27.00531 -26.79485 -25.65657 -25.36215 -23.93827 -23.36683 -21.84905 -21.74212 -20.47678 -20.20779 -19.28136 -18.82683 -18.36054 -17.61373 -17.42749 -16.71492 -16.54721 -16.42247 -16.10900 -15.58122 -15.44128 -15.03071 -14.71275 -14.53813 -14.40083 -14.27094 -14.14914 -13.88847 -13.80023 -13.70756 -13.48091 -13.19210 -13.10123 -12.96483 -12.75653 -12.60041 -12.46462 -12.37198 -12.28495 -12.18454 -12.03496 -11.87746 -11.83734 -11.51160 -11.40420 -11.10656 -11.05889 -10.98015 -10.77825 -10.51708 -10.00084 -9.25329 -8.00948 -5.33728 0.21346 0.80388 1.22647 1.36515 1.40455 1.47722 1.68002 2.17725 2.48773 3.04707 3.11324 3.28600 3.42160 3.49034 3.62614 3.66967 3.76399 3.81581 3.89640 3.96538 4.00693 4.01982 4.13979 4.17472 4.39748 4.51078 4.55480 4.55911 4.60934 4.69699 4.72605 4.73873 4.74170 4.83670 4.84668 4.87171 4.97377 5.03911 5.06779 5.08127 5.10361 5.16251 5.22496 5.25462 5.28984 5.42391 5.57859 5.60589 5.80315 6.23808 6.39213 7.02275 7.09528 7.12428 7.85423 8.05454 9.20801 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.003123 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.201752 B = 8962.366260 C = 9859.512569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.055 3.945 3 N -0.375 5.375 4 O 0.095 5.905 5 C 0.041 3.959 6 C -0.019 4.019 7 C -0.147 4.147 8 C -0.147 4.147 9 C -0.271 4.271 10 C 0.608 3.392 11 O -0.563 6.563 12 N -0.685 5.685 13 C 0.149 3.851 14 H 0.111 0.889 15 C -0.168 4.168 16 C 0.179 3.821 17 H 0.076 0.924 18 N -0.730 5.730 19 C -0.229 4.229 20 H 0.057 0.943 21 C -0.062 4.062 22 N -0.985 5.985 23 Si 0.948 3.052 24 H -0.279 1.279 25 H -0.299 1.299 26 H -0.246 1.246 27 C -0.113 4.113 28 C -0.114 4.114 29 C -0.134 4.134 30 C -0.117 4.117 31 H 0.091 0.909 32 H 0.097 0.903 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.081 0.919 43 H 0.059 0.941 44 H 0.368 0.632 45 H 0.257 0.743 46 H 0.107 0.893 47 H 0.056 0.944 48 H 0.058 0.942 49 H 0.085 0.915 50 H 0.060 0.940 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.834 24.753 9.156 26.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.083 5.083 4 O 0.036 5.964 5 C -0.023 4.023 6 C -0.039 4.039 7 C -0.204 4.204 8 C -0.205 4.205 9 C -0.279 4.279 10 C 0.393 3.607 11 O -0.442 6.442 12 N -0.334 5.334 13 C 0.044 3.956 14 H 0.128 0.872 15 C -0.210 4.210 16 C 0.068 3.932 17 H 0.094 0.906 18 N -0.372 5.372 19 C -0.361 4.361 20 H 0.075 0.925 21 C -0.253 4.253 22 N -0.636 5.636 23 Si 0.775 3.225 24 H -0.205 1.205 25 H -0.226 1.226 26 H -0.171 1.171 27 C -0.115 4.115 28 C -0.152 4.152 29 C -0.172 4.172 30 C -0.155 4.155 31 H 0.110 0.890 32 H 0.115 0.885 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.069 0.931 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.249 0.751 42 H 0.100 0.900 43 H 0.078 0.922 44 H 0.204 0.796 45 H 0.066 0.934 46 H 0.126 0.874 47 H 0.074 0.926 48 H 0.077 0.923 49 H 0.103 0.897 50 H 0.079 0.921 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.104 25.412 9.914 27.359 hybrid contribution 0.314 -0.818 -1.240 1.519 sum -1.790 24.594 8.674 26.140 Atomic orbital electron populations 1.20370 0.83317 1.05253 1.04687 1.25177 0.99726 0.85932 0.99892 1.73615 0.89464 1.23856 1.21357 1.84492 1.21279 1.22692 1.67926 1.25054 0.97400 0.83446 0.96442 1.20072 0.86410 0.97992 0.99408 1.21897 1.00557 1.03163 0.94777 1.21886 1.00527 1.03194 0.94854 1.21906 0.93575 0.94870 1.17507 1.16954 0.75932 0.83999 0.83853 1.90814 1.51921 1.68864 1.32603 1.45781 1.68775 1.10789 1.08097 1.22024 0.96306 0.78769 0.98503 0.87157 1.24117 0.98192 0.98443 1.00218 1.21271 0.93139 0.92688 0.86068 0.90576 1.42573 1.79493 1.05124 1.10000 1.19087 1.35131 0.85286 0.96553 0.92531 1.25457 1.02134 0.97561 1.00196 1.69882 1.53668 1.16243 1.23769 0.85522 0.78731 0.79377 0.78861 1.20495 1.22622 1.17081 1.23408 0.96293 0.96972 0.94827 1.22547 0.98043 0.99219 0.95377 1.22704 0.97309 1.00518 0.96632 1.22718 0.93921 1.02225 0.96599 0.89014 0.88462 0.88950 0.88661 0.92199 0.90924 0.89515 0.93100 0.89231 0.90871 0.75090 0.89999 0.92195 0.79636 0.93445 0.87435 0.92553 0.92283 0.89669 0.92079 0.88168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.12 10.49 71.23 0.75 -0.38 16 2 C 0.06 1.13 7.59 45.16 0.34 1.47 16 3 N -0.37 -8.37 12.01 -44.78 -0.54 -8.90 16 4 O 0.10 1.98 11.06 76.97 0.85 2.83 16 5 C 0.04 0.79 6.06 25.48 0.15 0.94 16 6 C -0.02 -0.30 3.33 -11.54 -0.04 -0.33 16 7 C -0.15 -1.74 9.18 71.98 0.66 -1.08 16 8 C -0.15 -1.91 9.18 71.98 0.66 -1.25 16 9 C -0.27 -5.93 6.24 -18.75 -0.12 -6.05 16 10 C 0.61 14.97 7.30 86.65 0.63 15.60 16 11 O -0.56 -18.22 16.71 -4.06 -0.07 -18.29 16 12 N -0.68 -14.44 5.25 -444.45 -2.33 -16.77 16 13 C 0.15 3.73 4.12 45.28 0.19 3.92 16 14 H 0.11 2.99 7.46 -2.39 -0.02 2.97 16 15 C -0.17 -5.08 7.68 31.23 0.24 -4.84 16 16 C 0.18 6.21 4.36 45.28 0.20 6.41 16 17 H 0.08 2.85 8.10 -2.39 -0.02 2.83 16 18 N -0.73 -31.54 5.13 -321.56 -1.65 -33.19 16 19 C -0.23 -12.57 10.45 84.03 0.88 -11.69 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.41 16 21 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 22 N -0.99 -62.23 13.97 21.65 0.30 -61.92 16 23 Si 0.95 43.69 27.73 68.60 1.90 45.59 16 24 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 25 H -0.30 -14.19 7.11 99.48 0.71 -13.48 16 26 H -0.25 -9.99 6.52 99.48 0.65 -9.35 16 27 C -0.11 -2.90 1.06 -52.31 -0.06 -2.96 16 28 C -0.11 -2.61 6.77 30.88 0.21 -2.40 16 29 C -0.13 -3.21 8.08 31.23 0.25 -2.96 16 30 C -0.12 -2.70 7.84 30.89 0.24 -2.46 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.10 1.66 7.71 -2.38 -0.02 1.65 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 39 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 40 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.41 7.07 7.02 -92.71 -0.65 6.42 16 42 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 43 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.37 15.14 3.78 -92.71 -0.35 14.79 16 45 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 46 H 0.11 1.77 7.03 -2.39 -0.02 1.75 16 47 H 0.06 1.49 6.42 -2.39 -0.02 1.48 16 48 H 0.06 1.79 8.14 -2.38 -0.02 1.77 16 49 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 50 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 51 H 0.10 1.85 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -71.27 413.85 4.02 -67.25 By element: Atomic # 1 Polarization: 34.67 SS G_CDS: -0.11 Total: 34.56 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.66 Total: -11.15 kcal Atomic # 7 Polarization: -116.57 SS G_CDS: -4.22 Total: -120.78 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.78 Total: -15.46 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.90 Total: 45.59 kcal Total: -71.27 4.02 -67.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001078649359.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.558 kcal (2) G-P(sol) polarization free energy of solvation -71.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds