Wall clock time and date at job start Wed Apr 1 2020 04:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30178 * 126.80732 * 2 1 4 4 O 1.20917 * 111.60810 * 180.25136 * 3 2 1 5 5 C 1.34045 * 111.56717 * 359.74948 * 4 3 2 6 6 C 1.50699 * 126.77723 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44697 * 359.97438 * 5 4 3 8 8 C 1.50691 * 128.00803 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47461 * 305.69411 * 8 7 5 10 10 C 1.53001 * 109.47341 * 185.69179 * 8 7 5 11 11 C 1.50704 * 109.47062 * 65.69470 * 8 7 5 12 12 O 1.21287 * 119.99883 * 355.63807 * 11 8 7 13 13 N 1.34776 * 119.99939 * 175.91708 * 11 8 7 14 14 C 1.47284 * 136.54385 * 359.35311 * 13 11 8 15 15 C 1.54388 * 87.49090 * 151.45704 * 14 13 11 16 16 H 1.09004 * 114.91823 * 141.75684 * 15 14 13 17 17 C 1.53065 * 111.61015 * 274.19018 * 15 14 13 18 18 C 1.53142 * 109.21456 * 142.38749 * 17 15 14 19 19 N 1.46538 * 108.24898 * 301.58205 * 18 17 15 20 20 C 1.36933 * 119.73866 * 236.44691 * 19 18 17 21 21 H 1.08004 * 120.00281 * 30.78935 * 20 19 18 22 22 C 1.38817 * 120.00056 * 210.79190 * 20 19 18 23 23 N 1.31612 * 119.99873 * 8.03349 * 22 20 19 24 24 Si 1.86805 * 120.00156 * 188.03014 * 22 20 19 25 25 H 1.48504 * 109.46932 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46994 * 120.00092 * 24 22 20 27 27 H 1.48495 * 109.46949 * 240.00240 * 24 22 20 28 28 C 1.45698 * 120.52503 * 56.42135 * 19 18 17 29 29 C 1.46471 * 136.53677 * 179.72576 * 13 11 8 30 30 H 1.08993 * 111.44027 * 96.36215 * 29 13 11 31 31 H 1.09008 * 109.47341 * 262.77826 * 1 2 3 32 32 H 1.09003 * 109.47185 * 22.77958 * 1 2 3 33 33 H 1.09003 * 109.47270 * 142.77911 * 1 2 3 34 34 H 1.08993 * 109.47184 * 274.88783 * 6 5 4 35 35 H 1.09004 * 109.46842 * 34.88769 * 6 5 4 36 36 H 1.08998 * 109.47394 * 154.88239 * 6 5 4 37 37 H 1.08996 * 109.47452 * 175.72958 * 9 8 7 38 38 H 1.08998 * 109.46883 * 295.73523 * 9 8 7 39 39 H 1.09003 * 109.46937 * 55.73596 * 9 8 7 40 40 H 1.08998 * 109.46849 * 305.09283 * 10 8 7 41 41 H 1.08998 * 109.46906 * 65.09566 * 10 8 7 42 42 H 1.09003 * 109.47209 * 185.09403 * 10 8 7 43 43 H 1.09004 * 113.52590 * 266.07231 * 14 13 11 44 44 H 1.08997 * 113.53112 * 36.70649 * 14 13 11 45 45 H 1.08999 * 109.51173 * 262.30525 * 17 15 14 46 46 H 1.08998 * 109.51285 * 22.41136 * 17 15 14 47 47 H 1.09002 * 109.71263 * 61.26727 * 18 17 15 48 48 H 1.08997 * 109.70841 * 181.84896 * 18 17 15 49 49 H 0.97002 * 120.00179 * 179.97438 * 23 22 20 50 50 H 1.09003 * 108.79221 * 199.12637 * 28 19 18 51 51 H 1.09000 * 108.78947 * 80.90720 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3538 -1.1322 0.0037 8 6 1.9589 -2.5864 0.0076 9 6 2.6313 -3.3006 -1.1666 10 6 0.4393 -2.7026 -0.1273 11 6 2.3985 -3.2228 1.3010 12 8 3.0446 -2.5824 2.1032 13 7 2.0785 -4.5054 1.5638 14 6 1.3349 -5.5819 0.8875 15 6 2.2442 -6.5843 1.6305 16 1 1.7443 -7.4895 1.9755 17 6 3.5493 -6.8322 0.8702 18 6 4.6980 -6.9731 1.8732 19 7 4.7651 -5.7447 2.6694 20 6 5.9302 -5.0267 2.7136 21 1 6.5958 -5.0244 1.8630 22 6 6.2561 -4.3018 3.8517 23 7 5.5306 -4.4281 4.9425 24 14 7.7244 -3.1470 3.8351 25 1 8.3690 -3.1851 2.4977 26 1 7.2694 -1.7637 4.1255 27 1 8.7016 -3.5740 4.8684 28 6 3.6018 -5.2810 3.4140 29 6 2.3076 -5.4563 2.6541 30 1 1.4599 -5.4897 3.3383 31 1 -0.3634 -0.1292 1.0196 32 1 -0.3634 0.9475 -0.3979 33 1 -0.3634 -0.8183 -0.6216 34 1 5.2545 -1.4798 -1.0344 35 1 5.6451 -0.8256 0.5743 36 1 4.7467 -2.3554 0.4297 37 1 2.4071 -4.3663 -1.1202 38 1 2.2559 -2.8908 -2.1042 39 1 3.7100 -3.1537 -1.1117 40 1 -0.0408 -2.1185 0.6577 41 1 0.1311 -2.3243 -1.1019 42 1 0.1452 -3.7480 -0.0338 43 1 0.2880 -5.6411 1.1852 44 1 1.4682 -5.5898 -0.1943 45 1 3.4619 -7.7482 0.2859 46 1 3.7476 -5.9928 0.2039 47 1 4.5126 -7.8252 2.5271 48 1 5.6369 -7.1173 1.3388 49 1 5.7585 -3.9219 5.7379 50 1 3.7320 -4.2240 3.6463 51 1 3.5382 -5.8382 4.3487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001084597183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:32 Heat of formation + Delta-G solvation = 100.321942 kcal Electronic energy + Delta-G solvation = -34108.936424 eV Core-core repulsion = 30014.439930 eV Total energy + Delta-G solvation = -4094.496494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.70896 -40.74807 -38.48341 -35.97156 -35.22205 -33.77215 -32.53303 -31.97326 -30.14271 -29.31312 -28.74883 -27.64293 -26.95051 -26.66821 -24.06249 -23.57094 -23.15643 -21.67218 -20.88475 -20.16604 -19.21324 -17.75132 -17.45027 -16.78427 -16.45683 -15.79987 -15.64581 -15.61639 -14.57350 -14.41461 -14.13795 -13.96423 -13.83902 -13.60347 -13.34366 -13.25837 -13.19419 -12.88987 -12.74315 -12.53632 -12.43072 -12.26001 -12.22275 -12.05166 -11.97260 -11.72911 -11.46454 -11.36867 -11.26262 -10.94768 -10.73266 -10.58575 -10.50042 -10.46247 -10.18323 -9.88252 -9.80287 -9.73569 -9.46497 -8.97114 -8.75293 -8.32360 -8.09683 -6.52022 -5.66801 -3.15361 1.71419 2.34342 3.19274 3.26659 3.40000 3.44486 3.49918 3.53459 4.26253 4.56148 4.57458 4.63404 4.64845 4.68863 4.93245 5.01800 5.17037 5.33188 5.36951 5.43271 5.45385 5.47458 5.48463 5.54372 5.57562 5.59797 5.63091 5.67144 5.68746 5.72030 5.77570 5.87241 5.90277 5.95063 6.04494 6.12610 6.16296 6.18795 6.26360 6.32868 6.38875 6.45923 6.52741 6.60049 6.78750 6.99762 7.50474 7.79051 7.93025 8.34526 8.48487 8.59516 8.78196 9.35902 9.98177 10.48690 11.40867 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005550 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.582814 B = 5043.652338 C = 6801.195288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.029 3.971 3 N -0.375 5.375 4 O 0.089 5.911 5 C 0.011 3.989 6 C -0.079 4.079 7 C -0.185 4.185 8 C 0.007 3.993 9 C -0.144 4.144 10 C -0.149 4.149 11 C 0.549 3.451 12 O -0.506 6.506 13 N -0.628 5.628 14 C 0.091 3.909 15 C -0.112 4.112 16 H 0.090 0.910 17 C -0.114 4.114 18 C 0.148 3.852 19 N -0.583 5.583 20 C -0.252 4.252 21 H 0.060 0.940 22 C 0.016 3.984 23 N -0.903 5.903 24 Si 0.896 3.104 25 H -0.278 1.278 26 H -0.288 1.288 27 H -0.291 1.291 28 C 0.169 3.831 29 C 0.118 3.882 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.063 0.937 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.018 0.982 48 H 0.055 0.945 49 H 0.251 0.749 50 H 0.099 0.901 51 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.088 -1.331 -13.616 18.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.130 4.130 3 N -0.083 5.083 4 O 0.027 5.973 5 C -0.053 4.053 6 C -0.136 4.136 7 C -0.189 4.189 8 C 0.004 3.996 9 C -0.201 4.201 10 C -0.206 4.206 11 C 0.336 3.664 12 O -0.379 6.379 13 N -0.364 5.364 14 C -0.033 4.033 15 C -0.132 4.132 16 H 0.108 0.892 17 C -0.154 4.154 18 C 0.021 3.979 19 N -0.305 5.305 20 C -0.382 4.382 21 H 0.078 0.922 22 C -0.183 4.183 23 N -0.547 5.547 24 Si 0.727 3.273 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.218 1.218 28 C 0.043 3.957 29 C 0.014 3.986 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.088 0.912 38 H 0.082 0.918 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.091 0.909 45 H 0.072 0.928 46 H 0.079 0.921 47 H 0.036 0.964 48 H 0.073 0.927 49 H 0.062 0.938 50 H 0.117 0.883 51 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -11.830 0.700 -13.038 17.619 hybrid contribution 0.461 -0.046 0.236 0.520 sum -11.369 0.654 -12.802 17.133 Atomic orbital electron populations 1.20618 0.86590 1.03812 1.03414 1.23251 0.98501 0.88500 1.02794 1.73776 0.89361 1.23955 1.21204 1.84754 1.21515 1.22828 1.68225 1.24210 0.98409 0.83069 0.99574 1.20525 0.89963 1.00252 1.02909 1.20209 0.91782 0.95298 1.11616 1.18859 0.97029 0.88948 0.94813 1.22013 1.01708 1.00400 0.95987 1.22299 0.92934 1.02918 1.02445 1.19594 0.80102 0.79200 0.87488 1.90802 1.38039 1.60559 1.48546 1.49380 1.53936 1.09448 1.23662 1.23471 0.96045 0.85571 0.98172 1.22808 0.96677 0.96328 0.97360 0.89198 1.21823 0.94924 1.00229 0.98377 1.20729 0.95262 0.89588 0.92280 1.43392 1.08692 1.22363 1.56072 1.19053 0.97692 1.24440 0.97026 0.92237 1.25077 0.97756 1.00526 0.94985 1.69965 1.40174 1.42941 1.01584 0.86315 0.82501 0.81130 0.77387 1.20285 1.21502 1.21812 1.20169 0.81954 1.02733 0.90849 1.22658 1.01248 0.84157 0.90505 0.91264 0.90320 0.91121 0.88892 0.90011 0.89815 0.87551 0.91236 0.91774 0.91271 0.91250 0.91144 0.91487 0.90617 0.90864 0.92789 0.92067 0.96397 0.92656 0.93836 0.88257 0.95336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.97 8.58 36.00 0.31 -0.66 16 2 C 0.03 0.44 7.25 -82.10 -0.60 -0.15 16 3 N -0.37 -6.50 12.07 33.42 0.40 -6.09 16 4 O 0.09 1.56 11.20 17.16 0.19 1.75 16 5 C 0.01 0.18 6.87 -35.30 -0.24 -0.06 16 6 C -0.08 -1.25 8.62 36.00 0.31 -0.94 16 7 C -0.18 -2.94 4.34 -104.42 -0.45 -3.40 16 8 C 0.01 0.11 0.56 -156.81 -0.09 0.02 16 9 C -0.14 -1.73 8.29 37.16 0.31 -1.42 16 10 C -0.15 -1.59 6.67 37.16 0.25 -1.34 16 11 C 0.55 10.05 5.97 -10.98 -0.07 9.98 16 12 O -0.51 -11.96 13.71 5.55 0.08 -11.89 16 13 N -0.63 -10.37 3.21 -187.44 -0.60 -10.97 16 14 C 0.09 1.07 5.41 -11.36 -0.06 1.01 16 15 C -0.11 -1.57 4.57 -90.14 -0.41 -1.99 16 16 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 17 C -0.11 -1.74 5.71 -26.62 -0.15 -1.89 16 18 C 0.15 2.90 6.46 -3.95 -0.03 2.88 16 19 N -0.58 -14.15 3.01 -174.90 -0.53 -14.68 16 20 C -0.25 -6.89 9.47 -15.06 -0.14 -7.03 16 21 H 0.06 1.61 7.84 -52.48 -0.41 1.20 16 22 C 0.02 0.45 5.07 -17.43 -0.09 0.36 16 23 N -0.90 -26.91 10.94 55.49 0.61 -26.30 16 24 Si 0.90 22.58 29.56 -169.99 -5.03 17.56 16 25 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 26 H -0.29 -7.49 7.11 56.52 0.40 -7.09 16 27 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 28 C 0.17 4.05 4.56 -5.43 -0.02 4.02 16 29 C 0.12 2.13 4.03 -77.66 -0.31 1.82 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 0.85 7.78 -51.92 -0.40 0.45 16 32 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.09 0.82 4.77 -51.93 -0.25 0.57 16 34 H 0.08 1.01 8.09 -51.93 -0.42 0.59 16 35 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 36 H 0.11 1.98 5.52 -51.93 -0.29 1.69 16 37 H 0.07 0.77 5.63 -51.93 -0.29 0.48 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.91 5.62 -51.93 -0.29 0.62 16 40 H 0.07 0.77 5.90 -51.93 -0.31 0.46 16 41 H 0.07 0.61 6.68 -51.93 -0.35 0.26 16 42 H 0.07 0.63 5.82 -51.93 -0.30 0.33 16 43 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 44 H 0.07 0.74 6.01 -51.93 -0.31 0.43 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 46 H 0.06 1.00 7.69 -51.93 -0.40 0.60 16 47 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.05 1.08 7.90 -51.93 -0.41 0.67 16 49 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 50 H 0.10 2.83 5.19 -51.93 -0.27 2.56 16 51 H 0.03 0.75 7.93 -51.93 -0.41 0.34 16 LS Contribution 379.20 15.07 5.71 5.71 Total: -1.00 -34.22 379.20 -8.28 -42.49 By element: Atomic # 1 Polarization: 8.85 SS G_CDS: -7.63 Total: 1.22 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.49 Total: 1.20 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: -0.12 Total: -58.05 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.27 Total: -10.14 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.03 Total: 17.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.22 -8.28 -42.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084597183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.813 kcal (2) G-P(sol) polarization free energy of solvation -34.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds