Wall clock time and date at job start Wed Apr 1 2020 04:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 N 1.30178 * 126.80732 * 2 1 4 4 O 1.20917 * 111.60810 * 180.25136 * 3 2 1 5 5 C 1.34045 * 111.56717 * 359.74948 * 4 3 2 6 6 C 1.50699 * 126.77723 * 179.97438 * 5 4 3 7 7 C 1.35454 * 106.44697 * 359.97438 * 5 4 3 8 8 C 1.50691 * 128.00803 * 179.97438 * 7 5 4 9 9 C 1.52998 * 109.47461 * 305.69411 * 8 7 5 10 10 C 1.53001 * 109.47341 * 185.69179 * 8 7 5 11 11 C 1.50704 * 109.47062 * 65.69470 * 8 7 5 12 12 O 1.21287 * 119.99883 * 355.63807 * 11 8 7 13 13 N 1.34776 * 119.99939 * 175.91708 * 11 8 7 14 14 C 1.47284 * 136.54385 * 359.35311 * 13 11 8 15 15 C 1.54388 * 87.49090 * 151.45704 * 14 13 11 16 16 H 1.09004 * 114.91823 * 141.75684 * 15 14 13 17 17 C 1.53065 * 111.61015 * 274.19018 * 15 14 13 18 18 C 1.53142 * 109.21456 * 142.38749 * 17 15 14 19 19 N 1.46538 * 108.24898 * 301.58205 * 18 17 15 20 20 C 1.36933 * 119.73866 * 236.44691 * 19 18 17 21 21 H 1.08004 * 120.00281 * 30.78935 * 20 19 18 22 22 C 1.38817 * 120.00056 * 210.79190 * 20 19 18 23 23 N 1.31612 * 119.99873 * 8.03349 * 22 20 19 24 24 Si 1.86805 * 120.00156 * 188.03014 * 22 20 19 25 25 H 1.48504 * 109.46932 * 0.02562 * 24 22 20 26 26 H 1.48493 * 109.46994 * 120.00092 * 24 22 20 27 27 H 1.48495 * 109.46949 * 240.00240 * 24 22 20 28 28 C 1.45698 * 120.52503 * 56.42135 * 19 18 17 29 29 C 1.46471 * 136.53677 * 179.72576 * 13 11 8 30 30 H 1.08993 * 111.44027 * 96.36215 * 29 13 11 31 31 H 1.09008 * 109.47341 * 262.77826 * 1 2 3 32 32 H 1.09003 * 109.47185 * 22.77958 * 1 2 3 33 33 H 1.09003 * 109.47270 * 142.77911 * 1 2 3 34 34 H 1.08993 * 109.47184 * 274.88783 * 6 5 4 35 35 H 1.09004 * 109.46842 * 34.88769 * 6 5 4 36 36 H 1.08998 * 109.47394 * 154.88239 * 6 5 4 37 37 H 1.08996 * 109.47452 * 175.72958 * 9 8 7 38 38 H 1.08998 * 109.46883 * 295.73523 * 9 8 7 39 39 H 1.09003 * 109.46937 * 55.73596 * 9 8 7 40 40 H 1.08998 * 109.46849 * 305.09283 * 10 8 7 41 41 H 1.08998 * 109.46906 * 65.09566 * 10 8 7 42 42 H 1.09003 * 109.47209 * 185.09403 * 10 8 7 43 43 H 1.09004 * 113.52590 * 266.07231 * 14 13 11 44 44 H 1.08997 * 113.53112 * 36.70649 * 14 13 11 45 45 H 1.08999 * 109.51173 * 262.30525 * 17 15 14 46 46 H 1.08998 * 109.51285 * 22.41136 * 17 15 14 47 47 H 1.09002 * 109.71263 * 61.26727 * 18 17 15 48 48 H 1.08997 * 109.70841 * 181.84896 * 18 17 15 49 49 H 0.97002 * 120.00179 * 179.97438 * 23 22 20 50 50 H 1.09003 * 108.79221 * 199.12637 * 28 19 18 51 51 H 1.09000 * 108.78947 * 80.90720 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2868 1.0423 0.0000 4 8 3.4537 0.7253 -0.0049 5 6 3.6024 -0.6069 -0.0035 6 6 4.9021 -1.3697 -0.0089 7 6 2.3538 -1.1322 0.0037 8 6 1.9589 -2.5864 0.0076 9 6 2.6313 -3.3006 -1.1666 10 6 0.4393 -2.7026 -0.1273 11 6 2.3985 -3.2228 1.3010 12 8 3.0446 -2.5824 2.1032 13 7 2.0785 -4.5054 1.5638 14 6 1.3349 -5.5819 0.8875 15 6 2.2442 -6.5843 1.6305 16 1 1.7443 -7.4895 1.9755 17 6 3.5493 -6.8322 0.8702 18 6 4.6980 -6.9731 1.8732 19 7 4.7651 -5.7447 2.6694 20 6 5.9302 -5.0267 2.7136 21 1 6.5958 -5.0244 1.8630 22 6 6.2561 -4.3018 3.8517 23 7 5.5306 -4.4281 4.9425 24 14 7.7244 -3.1470 3.8351 25 1 8.3690 -3.1851 2.4977 26 1 7.2694 -1.7637 4.1255 27 1 8.7016 -3.5740 4.8684 28 6 3.6018 -5.2810 3.4140 29 6 2.3076 -5.4563 2.6541 30 1 1.4599 -5.4897 3.3383 31 1 -0.3634 -0.1292 1.0196 32 1 -0.3634 0.9475 -0.3979 33 1 -0.3634 -0.8183 -0.6216 34 1 5.2545 -1.4798 -1.0344 35 1 5.6451 -0.8256 0.5743 36 1 4.7467 -2.3554 0.4297 37 1 2.4071 -4.3663 -1.1202 38 1 2.2559 -2.8908 -2.1042 39 1 3.7100 -3.1537 -1.1117 40 1 -0.0408 -2.1185 0.6577 41 1 0.1311 -2.3243 -1.1019 42 1 0.1452 -3.7480 -0.0338 43 1 0.2880 -5.6411 1.1852 44 1 1.4682 -5.5898 -0.1943 45 1 3.4619 -7.7482 0.2859 46 1 3.7476 -5.9928 0.2039 47 1 4.5126 -7.8252 2.5271 48 1 5.6369 -7.1173 1.3388 49 1 5.7585 -3.9219 5.7379 50 1 3.7320 -4.2240 3.6463 51 1 3.5382 -5.8382 4.3487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001084597183.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:35:31 Heat of formation + Delta-G solvation = 77.638364 kcal Electronic energy + Delta-G solvation = -34109.920058 eV Core-core repulsion = 30014.439930 eV Total energy + Delta-G solvation = -4095.480128 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.93363 -42.02883 -39.78258 -37.24315 -36.99731 -34.94581 -34.03317 -33.45086 -31.85080 -30.35573 -30.17980 -28.81483 -28.53621 -27.60184 -25.70409 -24.84185 -24.55988 -22.96460 -22.37787 -21.35770 -20.47258 -19.41180 -18.74047 -18.22879 -17.77153 -17.27592 -17.14762 -16.87254 -16.25385 -15.69659 -15.55106 -15.39302 -15.07178 -14.85825 -14.62290 -14.55587 -14.39723 -14.19831 -14.04492 -13.90598 -13.62804 -13.56691 -13.40460 -13.21320 -13.16300 -13.00604 -12.89750 -12.71650 -12.58549 -12.46273 -12.36774 -12.11740 -12.04319 -11.91122 -11.64268 -11.56040 -11.38659 -10.94996 -10.86998 -10.60470 -10.27333 -10.00731 -9.41449 -8.55562 -7.81963 -5.31700 0.44515 1.16039 1.35308 1.39864 1.46580 1.89031 2.04274 2.16300 2.48426 3.17496 3.34559 3.46805 3.49925 3.57773 3.62132 3.78228 3.88934 3.99728 4.06725 4.29942 4.33199 4.36819 4.46686 4.48445 4.53977 4.56924 4.58812 4.62426 4.69116 4.73731 4.76751 4.77907 4.83110 4.83736 4.93947 4.95533 4.98998 5.05329 5.05980 5.11818 5.14966 5.20684 5.32675 5.34618 5.39172 5.52321 5.62025 5.77170 5.87803 6.45065 7.08323 7.23264 7.24196 7.45383 8.00326 8.40904 9.21575 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010241 B = 0.005550 C = 0.004116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2733.582814 B = 5043.652338 C = 6801.195288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.032 3.968 3 N -0.401 5.401 4 O 0.067 5.933 5 C -0.009 4.009 6 C -0.071 4.071 7 C -0.191 4.191 8 C 0.015 3.985 9 C -0.141 4.141 10 C -0.148 4.148 11 C 0.539 3.461 12 O -0.577 6.577 13 N -0.632 5.632 14 C 0.105 3.895 15 C -0.102 4.102 16 H 0.125 0.875 17 C -0.103 4.103 18 C 0.139 3.861 19 N -0.598 5.598 20 C -0.244 4.244 21 H 0.060 0.940 22 C -0.042 4.042 23 N -0.935 5.935 24 Si 0.946 3.054 25 H -0.258 1.258 26 H -0.307 1.307 27 H -0.289 1.289 28 C 0.185 3.815 29 C 0.104 3.896 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.100 0.900 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.104 0.896 45 H 0.098 0.902 46 H 0.050 0.950 47 H 0.020 0.980 48 H 0.051 0.949 49 H 0.241 0.759 50 H 0.045 0.955 51 H -0.013 1.013 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.177 -3.528 -17.474 23.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 N -0.113 5.113 4 O 0.008 5.992 5 C -0.072 4.072 6 C -0.128 4.128 7 C -0.195 4.195 8 C 0.011 3.989 9 C -0.198 4.198 10 C -0.205 4.205 11 C 0.329 3.671 12 O -0.456 6.456 13 N -0.366 5.366 14 C -0.016 4.016 15 C -0.121 4.121 16 H 0.143 0.857 17 C -0.141 4.141 18 C 0.014 3.986 19 N -0.321 5.321 20 C -0.375 4.375 21 H 0.078 0.922 22 C -0.237 4.237 23 N -0.582 5.582 24 Si 0.776 3.224 25 H -0.182 1.182 26 H -0.235 1.235 27 H -0.216 1.216 28 C 0.059 3.941 29 C -0.001 4.001 30 H 0.100 0.900 31 H 0.100 0.900 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.134 0.866 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.104 0.896 38 H 0.109 0.891 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.119 0.881 42 H 0.106 0.894 43 H 0.132 0.868 44 H 0.122 0.878 45 H 0.117 0.883 46 H 0.069 0.931 47 H 0.038 0.962 48 H 0.069 0.931 49 H 0.050 0.950 50 H 0.063 0.937 51 H 0.005 0.995 Dipole moment (debyes) X Y Z Total from point charges -14.920 -1.573 -16.966 22.647 hybrid contribution 1.440 0.561 1.478 2.138 sum -13.480 -1.012 -15.488 20.557 Atomic orbital electron populations 1.20846 0.83427 1.05761 1.04350 1.23970 1.00407 0.87679 1.00696 1.73756 0.89519 1.25117 1.22873 1.84713 1.22017 1.23214 1.69207 1.24484 0.99357 0.83136 1.00207 1.20426 0.89681 0.98283 1.04459 1.20627 0.91402 0.96698 1.10812 1.18938 0.99722 0.87275 0.92988 1.22034 1.00433 1.01259 0.96064 1.22379 0.89617 1.04532 1.03960 1.20456 0.78988 0.79389 0.88250 1.90782 1.41209 1.62477 1.51118 1.49513 1.53975 1.09487 1.23668 1.23705 0.96880 0.81485 0.99526 1.22844 0.96973 0.96853 0.95435 0.85672 1.21698 0.93299 1.02027 0.97125 1.20972 0.97515 0.87424 0.92699 1.43620 1.08036 1.24000 1.56470 1.19337 0.98303 1.23546 0.96337 0.92196 1.25722 1.00254 1.02628 0.95134 1.70152 1.41863 1.44246 1.01946 0.85498 0.80268 0.78427 0.78207 1.18166 1.23480 1.21556 1.19722 0.85043 0.98661 0.90708 1.22635 0.97889 0.87594 0.91965 0.89999 0.90015 0.90040 0.85808 0.86642 0.91002 0.90471 0.89608 0.89059 0.93260 0.91833 0.88115 0.89377 0.86810 0.87774 0.88321 0.93076 0.96159 0.93055 0.94988 0.93671 0.99534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.69 8.58 71.23 0.61 -1.08 16 2 C 0.03 0.95 7.25 43.58 0.32 1.27 16 3 N -0.40 -14.05 12.07 -49.55 -0.60 -14.65 16 4 O 0.07 2.44 11.20 71.59 0.80 3.24 16 5 C -0.01 -0.30 6.87 25.04 0.17 -0.13 16 6 C -0.07 -2.36 8.62 71.24 0.61 -1.75 16 7 C -0.19 -5.97 4.34 -19.73 -0.09 -6.06 16 8 C 0.01 0.38 0.56 -53.68 -0.03 0.35 16 9 C -0.14 -2.89 8.29 71.98 0.60 -2.29 16 10 C -0.15 -2.45 6.67 71.98 0.48 -1.97 16 11 C 0.54 19.51 5.97 87.66 0.52 20.03 16 12 O -0.58 -28.83 13.71 -3.05 -0.04 -28.87 16 13 N -0.63 -19.50 3.21 -865.33 -2.77 -22.27 16 14 C 0.10 1.86 5.41 81.21 0.44 2.30 16 15 C -0.10 -2.39 4.57 -10.48 -0.05 -2.44 16 16 H 0.13 2.17 8.14 -2.38 -0.02 2.15 16 17 C -0.10 -2.71 5.71 30.66 0.18 -2.53 16 18 C 0.14 5.28 6.46 86.42 0.56 5.84 16 19 N -0.60 -29.84 3.01 -707.25 -2.13 -31.97 16 20 C -0.24 -13.87 9.47 84.04 0.80 -13.07 16 21 H 0.06 3.33 7.84 -2.91 -0.02 3.30 16 22 C -0.04 -2.53 5.07 84.86 0.43 -2.10 16 23 N -0.94 -59.73 10.94 21.65 0.24 -59.49 16 24 Si 0.95 48.90 29.56 68.60 2.03 50.92 16 25 H -0.26 -12.28 7.11 99.48 0.71 -11.58 16 26 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 27 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 28 C 0.19 9.29 4.56 85.91 0.39 9.68 16 29 C 0.10 3.63 4.03 38.71 0.16 3.79 16 30 H 0.08 2.63 8.14 -2.39 -0.02 2.62 16 31 H 0.08 1.58 7.78 -2.38 -0.02 1.56 16 32 H 0.08 1.41 8.14 -2.39 -0.02 1.40 16 33 H 0.12 1.59 4.77 -2.39 -0.01 1.58 16 34 H 0.12 2.86 8.09 -2.39 -0.02 2.84 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.08 3.05 5.52 -2.39 -0.01 3.03 16 37 H 0.09 1.45 5.63 -2.39 -0.01 1.44 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.05 1.21 5.62 -2.39 -0.01 1.20 16 40 H 0.06 1.16 5.90 -2.39 -0.01 1.14 16 41 H 0.10 1.09 6.68 -2.39 -0.02 1.07 16 42 H 0.09 1.09 5.82 -2.39 -0.01 1.08 16 43 H 0.11 1.32 8.08 -2.38 -0.02 1.30 16 44 H 0.10 1.31 6.01 -2.39 -0.01 1.29 16 45 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.05 1.48 7.69 -2.39 -0.02 1.46 16 47 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 48 H 0.05 1.95 7.90 -2.39 -0.02 1.93 16 49 H 0.24 15.21 8.31 -92.71 -0.77 14.44 16 50 H 0.04 2.76 5.19 -2.39 -0.01 2.75 16 51 H -0.01 -0.74 7.93 -2.39 -0.02 -0.76 16 Total: -1.00 -86.06 379.20 4.57 -81.49 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: 0.96 Total: 11.77 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.09 Total: 9.84 kcal Atomic # 7 Polarization: -123.12 SS G_CDS: -5.27 Total: -128.39 kcal Atomic # 8 Polarization: -26.39 SS G_CDS: 0.76 Total: -25.63 kcal Atomic # 14 Polarization: 48.90 SS G_CDS: 2.03 Total: 50.92 kcal Total: -86.06 4.57 -81.49 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001084597183.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.125 kcal (2) G-P(sol) polarization free energy of solvation -86.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds