Wall clock time and date at job start Wed Apr 1 2020 04:44:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30175 * 126.80493 * 2 1 4 4 O 1.20921 * 111.60731 * 180.25503 * 3 2 1 5 5 C 1.34039 * 111.56290 * 359.74567 * 4 3 2 6 6 C 1.50706 * 126.77720 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44994 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00877 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47288 * 1.85878 * 8 7 5 10 10 C 1.53004 * 109.46959 * 241.86006 * 8 7 5 11 11 C 1.50699 * 109.47263 * 121.85773 * 8 7 5 12 12 O 1.21280 * 119.99766 * 13.16148 * 11 8 7 13 13 N 1.34777 * 120.00112 * 193.15890 * 11 8 7 14 14 C 1.47158 * 121.21527 * 354.47270 * 13 11 8 15 15 C 1.52838 * 107.97833 * 122.73700 * 14 13 11 16 16 C 1.53093 * 110.57619 * 57.34665 * 15 14 13 17 17 H 1.09003 * 112.48928 * 70.54863 * 16 15 14 18 18 C 1.56026 * 106.38811 * 195.43067 * 16 15 14 19 19 C 1.54485 * 102.52041 * 78.15136 * 18 16 15 20 20 N 1.47434 * 107.15313 * 23.22853 * 19 18 16 21 21 C 1.36939 * 126.06050 * 181.48408 * 20 19 18 22 22 H 1.07989 * 120.00138 * 185.17941 * 21 20 19 23 23 C 1.38815 * 119.99837 * 5.17942 * 21 20 19 24 24 N 1.31626 * 119.99656 * 5.77661 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 185.78430 * 23 21 20 26 26 H 1.48505 * 109.46818 * 265.00166 * 25 23 21 27 27 H 1.48496 * 109.47255 * 25.00166 * 25 23 21 28 28 H 1.48500 * 109.47209 * 145.00414 * 25 23 21 29 29 C 1.46468 * 107.87976 * 1.21995 * 20 19 18 30 30 H 1.08997 * 108.42518 * 90.15637 * 29 20 19 31 31 C 1.46757 * 121.21695 * 174.49592 * 13 11 8 32 32 H 1.09001 * 109.46894 * 275.70670 * 1 2 3 33 33 H 1.08999 * 109.46974 * 35.69968 * 1 2 3 34 34 H 1.08996 * 109.47055 * 155.70202 * 1 2 3 35 35 H 1.09005 * 109.46939 * 270.00188 * 6 5 4 36 36 H 1.08994 * 109.46741 * 29.99354 * 6 5 4 37 37 H 1.08997 * 109.47109 * 150.00283 * 6 5 4 38 38 H 1.08995 * 109.47207 * 65.36925 * 10 8 7 39 39 H 1.08996 * 109.46751 * 185.37149 * 10 8 7 40 40 H 1.09002 * 109.46949 * 305.36730 * 10 8 7 41 41 H 1.09005 * 109.75517 * 3.11925 * 14 13 11 42 42 H 1.08998 * 109.80402 * 242.38460 * 14 13 11 43 43 H 1.09002 * 109.25066 * 297.06230 * 15 14 13 44 44 H 1.09001 * 109.25362 * 177.63437 * 15 14 13 45 45 H 1.09002 * 110.77796 * 196.65583 * 18 16 15 46 46 H 1.09000 * 110.77832 * 319.90214 * 18 16 15 47 47 H 1.09005 * 110.01736 * 263.78314 * 19 18 16 48 48 H 1.08999 * 109.77990 * 142.54505 * 19 18 16 49 49 H 0.97001 * 119.99598 * 180.02562 * 24 23 21 50 50 H 1.09005 * 109.22593 * 112.18540 * 31 13 11 51 51 H 1.08998 * 109.22953 * 352.82471 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 4.9022 -1.3697 -0.0079 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8551 -3.2062 0.0361 10 6 1.1631 -2.9017 -1.2621 11 6 1.1090 -2.8733 1.2170 12 8 0.6508 -1.9576 1.8669 13 7 0.8581 -4.1474 1.5776 14 6 1.2981 -5.2770 0.7434 15 6 2.1856 -6.1789 1.6005 16 6 1.4301 -6.6509 2.8456 17 1 0.6427 -7.3666 2.6091 18 6 2.5057 -7.2105 3.8275 19 6 3.1090 -5.9234 4.4324 20 7 2.0985 -4.8597 4.2873 21 6 2.2433 -3.5527 4.6695 22 1 1.4081 -2.8723 4.5938 23 6 3.4636 -3.1025 5.1541 24 7 4.5115 -3.8990 5.1404 25 14 3.6187 -1.3664 5.8260 26 1 4.1125 -0.4636 4.7553 27 1 2.2906 -0.8970 6.2958 28 1 4.5764 -1.3586 6.9609 29 6 0.9145 -5.4473 3.6561 30 1 0.2541 -5.8175 4.4402 31 6 0.1357 -4.4590 2.8165 32 1 -0.3633 0.1022 1.0226 33 1 -0.3633 0.8346 -0.5997 34 1 -0.3633 -0.9366 -0.4229 35 1 5.2111 -1.5552 -1.0367 36 1 5.6682 -0.7852 0.5016 37 1 4.7672 -2.3204 0.5079 38 1 1.8074 -2.7858 -2.1336 39 1 0.7963 -3.9270 -1.2152 40 1 0.3187 -2.2169 -1.3407 41 1 1.8653 -4.9056 -0.1102 42 1 0.4312 -5.8377 0.3939 43 1 3.0724 -5.6241 1.9069 44 1 2.4896 -7.0461 1.0142 45 1 2.0424 -7.8253 4.5992 46 1 3.2646 -7.7771 3.2877 47 1 4.0168 -5.6485 3.8951 48 1 3.3327 -6.0813 5.4874 49 1 5.3642 -3.5845 5.4795 50 1 -0.8357 -4.8865 2.5677 51 1 -0.0120 -3.5417 3.3864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085055512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:14 Heat of formation + Delta-G solvation = 55.111658 kcal Electronic energy + Delta-G solvation = -33909.459051 eV Core-core repulsion = 29813.002092 eV Total energy + Delta-G solvation = -4096.456959 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.62441 -40.13575 -38.31314 -35.44444 -35.03925 -33.50239 -32.83613 -31.96396 -31.02548 -29.01818 -28.49121 -28.39016 -27.41074 -25.17002 -24.49166 -23.71035 -22.53421 -21.67710 -20.06157 -19.94514 -19.37120 -18.27921 -17.39496 -16.81409 -16.63466 -16.39581 -15.45527 -15.13343 -14.85295 -14.26465 -14.07498 -14.03031 -13.95448 -13.59733 -13.31418 -13.27151 -13.09404 -12.90487 -12.78100 -12.62745 -12.50818 -12.24255 -12.03772 -11.99800 -11.70136 -11.58176 -11.43068 -11.35254 -11.21913 -10.92867 -10.78776 -10.69016 -10.55174 -10.11703 -9.87792 -9.80959 -9.69702 -9.56191 -9.51800 -9.22425 -8.81158 -8.55851 -8.08671 -6.76885 -5.65093 -2.99002 1.71683 2.47888 3.14774 3.35425 3.46472 3.48766 3.52503 3.56625 4.42067 4.56711 4.66570 4.70688 4.90008 5.00155 5.06678 5.10356 5.21941 5.30407 5.35105 5.46558 5.48459 5.51437 5.52508 5.59666 5.64271 5.68791 5.69750 5.73547 5.83433 5.89719 5.92363 5.97061 5.99585 6.06098 6.09385 6.13020 6.21450 6.25858 6.28753 6.43109 6.47236 6.50185 6.60463 6.74261 6.93385 7.10346 7.51883 7.68974 7.87863 7.92171 8.29641 8.58011 8.71360 9.27173 9.88498 10.53005 11.44929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.005607 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.263862 B = 4992.901409 C = 6405.755991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.056 3.944 3 N -0.379 5.379 4 O 0.090 5.910 5 C -0.024 4.024 6 C -0.075 4.075 7 C -0.179 4.179 8 C -0.029 4.029 9 H 0.103 0.897 10 C -0.147 4.147 11 C 0.531 3.469 12 O -0.527 6.527 13 N -0.593 5.593 14 C 0.106 3.894 15 C -0.124 4.124 16 C -0.101 4.101 17 H 0.074 0.926 18 C -0.142 4.142 19 C 0.173 3.827 20 N -0.586 5.586 21 C -0.211 4.211 22 H 0.078 0.922 23 C -0.005 4.005 24 N -0.923 5.923 25 Si 0.901 3.099 26 H -0.291 1.291 27 H -0.282 1.282 28 H -0.292 1.292 29 C 0.153 3.847 30 H 0.025 0.975 31 C 0.116 3.884 32 H 0.088 0.912 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.083 0.917 37 H 0.094 0.906 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.052 0.948 46 H 0.058 0.942 47 H 0.060 0.940 48 H 0.028 0.972 49 H 0.249 0.751 50 H 0.052 0.948 51 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.457 -4.830 -15.175 16.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.103 4.103 3 N -0.087 5.087 4 O 0.028 5.972 5 C -0.088 4.088 6 C -0.132 4.132 7 C -0.183 4.183 8 C -0.051 4.051 9 H 0.121 0.879 10 C -0.204 4.204 11 C 0.318 3.682 12 O -0.402 6.402 13 N -0.326 5.326 14 C -0.017 4.017 15 C -0.163 4.163 16 C -0.120 4.120 17 H 0.093 0.907 18 C -0.181 4.181 19 C 0.049 3.951 20 N -0.312 5.312 21 C -0.339 4.339 22 H 0.096 0.904 23 C -0.201 4.201 24 N -0.571 5.571 25 Si 0.732 3.268 26 H -0.218 1.218 27 H -0.207 1.207 28 H -0.219 1.219 29 C 0.045 3.955 30 H 0.043 0.957 31 C -0.008 4.008 32 H 0.107 0.893 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.098 0.902 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.077 0.923 47 H 0.078 0.922 48 H 0.046 0.954 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.730 -2.842 -14.698 15.699 hybrid contribution 0.283 -0.012 0.637 0.698 sum -4.447 -2.854 -14.060 15.020 Atomic orbital electron populations 1.20181 0.86255 1.02139 1.03823 1.23220 0.98728 0.87993 1.00359 1.73759 0.89249 1.24000 1.21708 1.84760 1.21765 1.22272 1.68426 1.24172 0.98042 0.83983 1.02600 1.20357 0.90220 0.99184 1.03441 1.20247 0.91707 0.95931 1.10417 1.19481 0.99673 0.91064 0.94890 0.87887 1.21956 1.00497 1.02374 0.95573 1.20014 0.80503 0.82345 0.85377 1.90667 1.51502 1.43728 1.54342 1.47728 1.57113 1.04818 1.22960 1.21783 0.98199 0.88199 0.93534 1.21857 0.99789 0.98669 0.95939 1.22359 0.97324 0.97314 0.95051 0.90729 1.23131 0.97691 0.99299 0.97931 1.21277 0.92174 0.83513 0.98152 1.44294 1.11625 1.06193 1.69057 1.18967 0.95954 0.84467 1.34533 0.90415 1.24660 0.95593 0.97590 1.02216 1.69945 1.00052 1.34746 1.52358 0.86242 0.77375 0.84782 0.78365 1.21796 1.20728 1.21867 1.20735 0.90803 0.91439 0.92566 0.95739 1.21388 0.92879 1.01353 0.85154 0.89342 0.91745 0.90643 0.89665 0.89780 0.88752 0.91442 0.91122 0.91562 0.90180 0.91797 0.89976 0.92102 0.92874 0.92291 0.92229 0.95372 0.94096 0.92980 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 8.85 36.01 0.32 -0.67 16 2 C 0.06 0.98 6.66 -82.10 -0.55 0.43 16 3 N -0.38 -7.04 12.07 33.42 0.40 -6.63 16 4 O 0.09 1.58 11.20 17.18 0.19 1.77 16 5 C -0.02 -0.39 7.49 -35.30 -0.26 -0.65 16 6 C -0.07 -0.90 10.18 36.01 0.37 -0.54 16 7 C -0.18 -2.94 4.63 -104.42 -0.48 -3.43 16 8 C -0.03 -0.42 2.14 -92.92 -0.20 -0.62 16 9 H 0.10 1.38 6.31 -51.93 -0.33 1.05 16 10 C -0.15 -1.53 8.70 37.16 0.32 -1.21 16 11 C 0.53 9.46 6.88 -10.99 -0.08 9.39 16 12 O -0.53 -11.39 13.01 5.56 0.07 -11.31 16 13 N -0.59 -9.69 2.97 -174.08 -0.52 -10.21 16 14 C 0.11 1.32 5.35 -3.77 -0.02 1.30 16 15 C -0.12 -1.75 5.04 -26.77 -0.13 -1.89 16 16 C -0.10 -1.56 3.68 -88.43 -0.33 -1.88 16 17 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 18 C -0.14 -2.44 6.33 -24.33 -0.15 -2.59 16 19 C 0.17 3.97 4.67 -2.75 -0.01 3.96 16 20 N -0.59 -14.00 3.20 -164.43 -0.53 -14.53 16 21 C -0.21 -5.79 9.64 -15.06 -0.15 -5.94 16 22 H 0.08 2.22 6.60 -52.49 -0.35 1.88 16 23 C 0.00 -0.14 5.46 -17.43 -0.10 -0.23 16 24 N -0.92 -26.67 10.48 55.49 0.58 -26.09 16 25 Si 0.90 23.61 29.56 -169.99 -5.02 18.58 16 26 H -0.29 -7.81 7.11 56.52 0.40 -7.41 16 27 H -0.28 -7.40 7.11 56.52 0.40 -6.99 16 28 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 29 C 0.15 2.92 2.97 -68.30 -0.20 2.72 16 30 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 31 C 0.12 2.07 5.66 -4.77 -0.03 2.04 16 32 H 0.09 1.47 7.56 -51.93 -0.39 1.08 16 33 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.00 5.56 -51.93 -0.29 0.71 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.21 7.37 -51.93 -0.38 0.83 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.62 5.96 -51.93 -0.31 0.32 16 40 H 0.07 0.72 5.51 -51.93 -0.29 0.43 16 41 H 0.08 0.84 4.69 -51.93 -0.24 0.59 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.08 1.47 6.83 -51.93 -0.35 1.12 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.06 0.91 7.98 -51.93 -0.41 0.50 16 47 H 0.06 1.52 6.59 -51.93 -0.34 1.18 16 48 H 0.03 0.73 7.96 -51.93 -0.41 0.31 16 49 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.09 2.01 5.61 -51.93 -0.29 1.72 16 LS Contribution 382.39 15.07 5.76 5.76 Total: -1.00 -33.73 382.39 -8.49 -42.22 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.76 Total: 0.26 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: -1.68 Total: 0.17 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.06 Total: -57.46 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.26 Total: -9.54 kcal Atomic # 14 Polarization: 23.61 SS G_CDS: -5.02 Total: 18.58 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.73 -8.49 -42.22 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085055512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.334 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds