Wall clock time and date at job start Wed Apr 1 2020 04:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.30175 * 126.80493 * 2 1 4 4 O 1.20921 * 111.60731 * 180.25503 * 3 2 1 5 5 C 1.34039 * 111.56290 * 359.74567 * 4 3 2 6 6 C 1.50706 * 126.77720 * 180.02562 * 5 4 3 7 7 C 1.35450 * 106.44994 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00877 * 179.97438 * 7 5 4 9 9 H 1.08996 * 109.47288 * 1.85878 * 8 7 5 10 10 C 1.53004 * 109.46959 * 241.86006 * 8 7 5 11 11 C 1.50699 * 109.47263 * 121.85773 * 8 7 5 12 12 O 1.21280 * 119.99766 * 13.16148 * 11 8 7 13 13 N 1.34777 * 120.00112 * 193.15890 * 11 8 7 14 14 C 1.47158 * 121.21527 * 354.47270 * 13 11 8 15 15 C 1.52838 * 107.97833 * 122.73700 * 14 13 11 16 16 C 1.53093 * 110.57619 * 57.34665 * 15 14 13 17 17 H 1.09003 * 112.48928 * 70.54863 * 16 15 14 18 18 C 1.56026 * 106.38811 * 195.43067 * 16 15 14 19 19 C 1.54485 * 102.52041 * 78.15136 * 18 16 15 20 20 N 1.47434 * 107.15313 * 23.22853 * 19 18 16 21 21 C 1.36939 * 126.06050 * 181.48408 * 20 19 18 22 22 H 1.07989 * 120.00138 * 185.17941 * 21 20 19 23 23 C 1.38815 * 119.99837 * 5.17942 * 21 20 19 24 24 N 1.31626 * 119.99656 * 5.77661 * 23 21 20 25 25 Si 1.86796 * 120.00031 * 185.78430 * 23 21 20 26 26 H 1.48505 * 109.46818 * 265.00166 * 25 23 21 27 27 H 1.48496 * 109.47255 * 25.00166 * 25 23 21 28 28 H 1.48500 * 109.47209 * 145.00414 * 25 23 21 29 29 C 1.46468 * 107.87976 * 1.21995 * 20 19 18 30 30 H 1.08997 * 108.42518 * 90.15637 * 29 20 19 31 31 C 1.46757 * 121.21695 * 174.49592 * 13 11 8 32 32 H 1.09001 * 109.46894 * 275.70670 * 1 2 3 33 33 H 1.08999 * 109.46974 * 35.69968 * 1 2 3 34 34 H 1.08996 * 109.47055 * 155.70202 * 1 2 3 35 35 H 1.09005 * 109.46939 * 270.00188 * 6 5 4 36 36 H 1.08994 * 109.46741 * 29.99354 * 6 5 4 37 37 H 1.08997 * 109.47109 * 150.00283 * 6 5 4 38 38 H 1.08995 * 109.47207 * 65.36925 * 10 8 7 39 39 H 1.08996 * 109.46751 * 185.37149 * 10 8 7 40 40 H 1.09002 * 109.46949 * 305.36730 * 10 8 7 41 41 H 1.09005 * 109.75517 * 3.11925 * 14 13 11 42 42 H 1.08998 * 109.80402 * 242.38460 * 14 13 11 43 43 H 1.09002 * 109.25066 * 297.06230 * 15 14 13 44 44 H 1.09001 * 109.25362 * 177.63437 * 15 14 13 45 45 H 1.09002 * 110.77796 * 196.65583 * 18 16 15 46 46 H 1.09000 * 110.77832 * 319.90214 * 18 16 15 47 47 H 1.09005 * 110.01736 * 263.78314 * 19 18 16 48 48 H 1.08999 * 109.77990 * 142.54505 * 19 18 16 49 49 H 0.97001 * 119.99598 * 180.02562 * 24 23 21 50 50 H 1.09005 * 109.22593 * 112.18540 * 31 13 11 51 51 H 1.08998 * 109.22953 * 352.82471 * 31 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2869 1.0423 0.0000 4 8 3.4538 0.7253 -0.0050 5 6 3.6025 -0.6068 -0.0036 6 6 4.9022 -1.3697 -0.0079 7 6 2.3540 -1.1321 0.0026 8 6 1.9590 -2.5864 0.0061 9 1 2.8551 -3.2062 0.0361 10 6 1.1631 -2.9017 -1.2621 11 6 1.1090 -2.8733 1.2170 12 8 0.6508 -1.9576 1.8669 13 7 0.8581 -4.1474 1.5776 14 6 1.2981 -5.2770 0.7434 15 6 2.1856 -6.1789 1.6005 16 6 1.4301 -6.6509 2.8456 17 1 0.6427 -7.3666 2.6091 18 6 2.5057 -7.2105 3.8275 19 6 3.1090 -5.9234 4.4324 20 7 2.0985 -4.8597 4.2873 21 6 2.2433 -3.5527 4.6695 22 1 1.4081 -2.8723 4.5938 23 6 3.4636 -3.1025 5.1541 24 7 4.5115 -3.8990 5.1404 25 14 3.6187 -1.3664 5.8260 26 1 4.1125 -0.4636 4.7553 27 1 2.2906 -0.8970 6.2958 28 1 4.5764 -1.3586 6.9609 29 6 0.9145 -5.4473 3.6561 30 1 0.2541 -5.8175 4.4402 31 6 0.1357 -4.4590 2.8165 32 1 -0.3633 0.1022 1.0226 33 1 -0.3633 0.8346 -0.5997 34 1 -0.3633 -0.9366 -0.4229 35 1 5.2111 -1.5552 -1.0367 36 1 5.6682 -0.7852 0.5016 37 1 4.7672 -2.3204 0.5079 38 1 1.8074 -2.7858 -2.1336 39 1 0.7963 -3.9270 -1.2152 40 1 0.3187 -2.2169 -1.3407 41 1 1.8653 -4.9056 -0.1102 42 1 0.4312 -5.8377 0.3939 43 1 3.0724 -5.6241 1.9069 44 1 2.4896 -7.0461 1.0142 45 1 2.0424 -7.8253 4.5992 46 1 3.2646 -7.7771 3.2877 47 1 4.0168 -5.6485 3.8951 48 1 3.3327 -6.0813 5.4874 49 1 5.3642 -3.5845 5.4795 50 1 -0.8357 -4.8865 2.5677 51 1 -0.0120 -3.5417 3.3864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085055512.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:44:13 Heat of formation + Delta-G solvation = 33.882093 kcal Electronic energy + Delta-G solvation = -33910.379634 eV Core-core repulsion = 29813.002092 eV Total energy + Delta-G solvation = -4097.377542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.92121 -41.46226 -39.75948 -36.70400 -36.49556 -34.78822 -34.58527 -33.16772 -32.55819 -30.48483 -30.02019 -29.71359 -28.50365 -26.55941 -26.16072 -25.04719 -23.79338 -22.98835 -21.71517 -21.24015 -20.70251 -19.66491 -18.71455 -18.43458 -18.07823 -17.74358 -16.93311 -16.58521 -16.40590 -15.96994 -15.54772 -15.31407 -15.24503 -14.99839 -14.58683 -14.40351 -14.29869 -14.07163 -13.94382 -13.86274 -13.70772 -13.64577 -13.41262 -13.18953 -13.14846 -13.01395 -12.92460 -12.74597 -12.63735 -12.49816 -12.41152 -12.25609 -12.06110 -11.73391 -11.68923 -11.34834 -11.18129 -11.07995 -10.84557 -10.70271 -10.53767 -10.05465 -9.38160 -8.77751 -7.83749 -5.14426 0.46302 1.18693 1.28808 1.32851 1.39525 1.83444 2.16881 2.27667 2.43424 3.21465 3.32678 3.49184 3.53839 3.63250 3.82035 3.92572 3.97916 4.02427 4.15615 4.18265 4.28745 4.36724 4.41818 4.52740 4.55192 4.58289 4.62384 4.65369 4.70303 4.71717 4.74267 4.79348 4.83789 4.87707 4.93407 4.97799 4.98751 5.06901 5.11842 5.17682 5.21438 5.21565 5.38046 5.41471 5.52345 5.69011 5.75227 5.79134 5.88358 6.25238 6.67001 7.15369 7.29017 7.40935 7.83723 8.46799 9.24029 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009814 B = 0.005607 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2852.263862 B = 4992.901409 C = 6405.755991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.044 3.956 3 N -0.408 5.408 4 O 0.075 5.925 5 C -0.030 4.030 6 C -0.072 4.072 7 C -0.196 4.196 8 C -0.021 4.021 9 H 0.114 0.886 10 C -0.140 4.140 11 C 0.518 3.482 12 O -0.578 6.578 13 N -0.594 5.594 14 C 0.101 3.899 15 C -0.121 4.121 16 C -0.083 4.083 17 H 0.121 0.879 18 C -0.129 4.129 19 C 0.180 3.820 20 N -0.601 5.601 21 C -0.196 4.196 22 H 0.059 0.941 23 C -0.052 4.052 24 N -0.939 5.939 25 Si 0.940 3.060 26 H -0.303 1.303 27 H -0.286 1.286 28 H -0.287 1.287 29 C 0.141 3.859 30 H 0.022 0.978 31 C 0.120 3.880 32 H 0.064 0.936 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.125 0.875 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.036 0.964 44 H 0.103 0.897 45 H 0.063 0.937 46 H 0.083 0.917 47 H 0.027 0.973 48 H -0.016 1.016 49 H 0.243 0.757 50 H 0.090 0.910 51 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.446 -8.057 -18.385 20.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.115 4.115 3 N -0.119 5.119 4 O 0.016 5.984 5 C -0.094 4.094 6 C -0.129 4.129 7 C -0.200 4.200 8 C -0.043 4.043 9 H 0.132 0.868 10 C -0.197 4.197 11 C 0.307 3.693 12 O -0.457 6.457 13 N -0.326 5.326 14 C -0.020 4.020 15 C -0.159 4.159 16 C -0.103 4.103 17 H 0.139 0.861 18 C -0.167 4.167 19 C 0.055 3.945 20 N -0.326 5.326 21 C -0.326 4.326 22 H 0.076 0.924 23 C -0.246 4.246 24 N -0.589 5.589 25 Si 0.772 3.228 26 H -0.231 1.231 27 H -0.212 1.212 28 H -0.213 1.213 29 C 0.034 3.966 30 H 0.040 0.960 31 C -0.004 4.004 32 H 0.082 0.918 33 H 0.100 0.900 34 H 0.111 0.889 35 H 0.143 0.857 36 H 0.104 0.896 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.122 0.878 42 H 0.123 0.877 43 H 0.055 0.945 44 H 0.121 0.879 45 H 0.082 0.918 46 H 0.102 0.898 47 H 0.046 0.954 48 H 0.002 0.998 49 H 0.052 0.948 50 H 0.108 0.892 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.729 -6.123 -17.928 19.792 hybrid contribution 0.533 0.966 1.699 2.026 sum -5.196 -5.156 -16.228 17.803 Atomic orbital electron populations 1.20189 0.85011 1.03865 1.02737 1.23699 0.99804 0.88271 0.99722 1.73731 0.89796 1.25063 1.23309 1.84709 1.21536 1.23342 1.68843 1.24897 0.99552 0.83486 1.01456 1.20528 0.88438 0.98047 1.05906 1.20645 0.91708 0.97013 1.10654 1.19560 0.99897 0.89761 0.95105 0.86791 1.21981 1.00140 1.03572 0.93975 1.20735 0.80281 0.82314 0.86012 1.90652 1.53527 1.45370 1.56182 1.47886 1.56477 1.05643 1.22592 1.22169 0.99838 0.86808 0.93161 1.21833 0.98108 1.00008 0.95997 1.22413 0.97622 0.95750 0.94490 0.86090 1.22996 0.98725 0.96256 0.98689 1.21064 0.91684 0.86230 0.95550 1.44432 1.13577 1.05177 1.69424 1.18914 0.94876 0.86036 1.32796 0.92359 1.25089 0.96015 0.99532 1.03940 1.70085 0.99913 1.35243 1.53709 0.85625 0.76877 0.82604 0.77671 1.23118 1.21227 1.21299 1.21040 0.89149 0.93154 0.93249 0.96043 1.21206 0.94625 0.98968 0.85589 0.91752 0.89958 0.88923 0.85650 0.89616 0.89486 0.89205 0.88677 0.92140 0.87770 0.87696 0.94483 0.87888 0.91786 0.89825 0.95432 0.99758 0.94774 0.89210 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.83 8.85 71.24 0.63 -1.20 16 2 C 0.04 1.55 6.66 43.58 0.29 1.84 16 3 N -0.41 -15.61 12.07 -49.55 -0.60 -16.21 16 4 O 0.08 2.73 11.20 71.64 0.80 3.53 16 5 C -0.03 -0.97 7.49 25.04 0.19 -0.78 16 6 C -0.07 -1.67 10.18 71.24 0.73 -0.94 16 7 C -0.20 -6.39 4.63 -19.74 -0.09 -6.48 16 8 C -0.02 -0.57 2.14 -12.28 -0.03 -0.60 16 9 H 0.11 2.77 6.31 -2.39 -0.02 2.75 16 10 C -0.14 -2.38 8.70 71.98 0.63 -1.75 16 11 C 0.52 18.08 6.88 87.66 0.60 18.68 16 12 O -0.58 -25.80 13.01 -3.03 -0.04 -25.84 16 13 N -0.59 -18.03 2.97 -823.06 -2.44 -20.47 16 14 C 0.10 1.99 5.35 86.20 0.46 2.45 16 15 C -0.12 -2.85 5.04 30.57 0.15 -2.69 16 16 C -0.08 -2.21 3.68 -9.38 -0.03 -2.24 16 17 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.13 -4.04 6.33 32.15 0.20 -3.84 16 19 C 0.18 8.34 4.67 86.71 0.40 8.74 16 20 N -0.60 -29.20 3.20 -674.14 -2.16 -31.35 16 21 C -0.20 -11.22 9.64 84.03 0.81 -10.41 16 22 H 0.06 3.53 6.60 -2.92 -0.02 3.51 16 23 C -0.05 -3.11 5.46 84.86 0.46 -2.65 16 24 N -0.94 -56.54 10.48 21.65 0.23 -56.31 16 25 Si 0.94 50.68 29.56 68.60 2.03 52.71 16 26 H -0.30 -16.77 7.11 99.48 0.71 -16.06 16 27 H -0.29 -15.44 7.11 99.48 0.71 -14.74 16 28 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 29 C 0.14 5.16 2.97 44.77 0.13 5.29 16 30 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 31 C 0.12 4.13 5.66 85.77 0.49 4.62 16 32 H 0.06 2.25 7.56 -2.39 -0.02 2.23 16 33 H 0.08 2.09 8.14 -2.39 -0.02 2.08 16 34 H 0.09 2.39 5.56 -2.39 -0.01 2.38 16 35 H 0.13 1.86 8.14 -2.38 -0.02 1.84 16 36 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 37 H 0.09 2.16 7.37 -2.39 -0.02 2.14 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.15 5.96 -2.39 -0.01 1.14 16 40 H 0.06 1.12 5.51 -2.39 -0.01 1.11 16 41 H 0.10 1.57 4.69 -2.38 -0.01 1.56 16 42 H 0.11 1.34 8.14 -2.39 -0.02 1.32 16 43 H 0.04 1.23 6.83 -2.39 -0.02 1.22 16 44 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 46 H 0.08 2.26 7.98 -2.39 -0.02 2.24 16 47 H 0.03 1.45 6.59 -2.38 -0.02 1.43 16 48 H -0.02 -0.86 7.96 -2.39 -0.02 -0.88 16 49 H 0.24 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.09 2.40 8.14 -2.38 -0.02 2.39 16 51 H 0.05 2.06 5.61 -2.39 -0.01 2.04 16 Total: -1.00 -82.10 382.39 4.80 -77.30 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.95 Total: 8.61 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: 6.03 Total: 8.04 kcal Atomic # 7 Polarization: -119.38 SS G_CDS: -4.97 Total: -124.35 kcal Atomic # 8 Polarization: -23.08 SS G_CDS: 0.76 Total: -22.31 kcal Atomic # 14 Polarization: 50.68 SS G_CDS: 2.03 Total: 52.71 kcal Total: -82.10 4.80 -77.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085055512.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.183 kcal (2) G-P(sol) polarization free energy of solvation -82.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.301 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds