Wall clock time and date at job start Wed Apr 1 2020 05:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29935 * 125.37421 * 2 1 4 4 C 1.36066 * 108.47183 * 179.84595 * 3 2 1 5 5 C 1.47421 * 126.45019 * 180.16716 * 4 3 2 6 6 O 1.21613 * 120.00190 * 180.29793 * 5 4 3 7 7 N 1.34784 * 119.99947 * 0.29292 * 5 4 3 8 8 C 1.47172 * 125.65907 * 0.02804 * 7 5 4 9 9 C 1.53693 * 107.11082 * 181.46962 * 8 7 5 10 10 C 1.54514 * 103.64897 * 21.54085 * 9 8 7 11 11 C 1.47484 * 125.66298 * 179.71666 * 7 5 4 12 12 H 1.08999 * 110.35220 * 274.87852 * 11 7 5 13 13 C 1.53002 * 110.35022 * 37.16727 * 11 7 5 14 14 C 1.52279 * 110.63156 * 263.42940 * 9 8 7 15 15 C 1.53314 * 109.42052 * 296.22853 * 14 9 8 16 16 N 1.46920 * 108.70881 * 306.49004 * 15 14 9 17 17 C 1.36936 * 120.56524 * 234.21067 * 16 15 14 18 18 H 1.07994 * 119.99746 * 27.95575 * 17 16 15 19 19 C 1.38812 * 119.99960 * 207.94661 * 17 16 15 20 20 N 1.31621 * 120.00282 * 17.45036 * 19 17 16 21 21 Si 1.86796 * 120.00039 * 197.44784 * 19 17 16 22 22 H 1.48502 * 109.47106 * 90.00512 * 21 19 17 23 23 H 1.48498 * 109.47257 * 210.00412 * 21 19 17 24 24 H 1.48503 * 109.47049 * 330.00036 * 21 19 17 25 25 C 1.46937 * 118.87003 * 54.23604 * 16 15 14 26 26 C 1.52274 * 110.62872 * 139.65663 * 9 8 7 27 27 C 1.36093 * 107.10347 * 0.41198 * 4 3 2 28 28 C 1.50699 * 126.52274 * 179.71533 * 27 4 3 29 29 O 1.34046 * 125.37884 * 180.30663 * 2 1 3 30 30 H 1.09002 * 109.47098 * 179.71945 * 1 2 3 31 31 H 1.08998 * 109.47248 * 59.71805 * 1 2 3 32 32 H 1.09000 * 109.47117 * 299.71691 * 1 2 3 33 33 H 1.09004 * 109.90937 * 300.83935 * 8 7 5 34 34 H 1.08997 * 109.91010 * 61.91074 * 8 7 5 35 35 H 1.09001 * 111.01142 * 83.24094 * 10 9 8 36 36 H 1.08990 * 111.01720 * 207.08233 * 10 9 8 37 37 H 1.09003 * 109.47378 * 58.54544 * 13 11 7 38 38 H 1.08998 * 109.46839 * 178.54309 * 13 11 7 39 39 H 1.09000 * 109.47008 * 298.54263 * 13 11 7 40 40 H 1.09008 * 109.47831 * 56.21368 * 14 9 8 41 41 H 1.09000 * 109.47612 * 176.24136 * 14 9 8 42 42 H 1.08995 * 109.59478 * 186.72188 * 15 14 9 43 43 H 1.09001 * 109.59570 * 66.26063 * 15 14 9 44 44 H 0.97000 * 120.00606 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.60139 * 185.98914 * 25 16 15 46 46 H 1.08999 * 109.60238 * 65.52103 * 25 16 15 47 47 H 1.09004 * 109.47949 * 183.74073 * 26 9 8 48 48 H 1.08998 * 109.47763 * 303.78035 * 26 9 8 49 49 H 1.09007 * 109.46808 * 180.02562 * 28 27 4 50 50 H 1.08997 * 109.47696 * 300.01906 * 28 27 4 51 51 H 1.09001 * 109.47610 * 60.02188 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6639 0.0035 5 6 4.7439 1.5438 0.0082 6 8 5.8604 1.0618 0.0055 7 7 4.5879 2.8826 0.0153 8 6 3.3008 3.5963 0.0197 9 6 3.6174 5.1000 -0.0102 10 6 5.0520 5.1592 -0.5812 11 6 5.6785 3.8753 0.0265 12 1 6.0123 4.0602 1.0475 13 6 6.8457 3.3933 -0.8373 14 6 3.5867 5.6828 1.3963 15 6 2.1683 5.5652 1.9660 16 7 1.2272 6.1756 1.0172 17 6 0.3630 7.1558 1.4266 18 1 0.6276 7.7979 2.2536 19 6 -0.8529 7.3241 0.7785 20 7 -1.3332 6.3617 0.0200 21 14 -1.8076 8.9166 0.9829 22 1 -1.3958 9.8793 -0.0701 23 1 -3.2617 8.6413 0.8604 24 1 -1.5245 9.4953 2.3209 25 6 1.2287 5.7161 -0.3785 26 6 2.6533 5.8330 -0.9331 27 6 3.5659 -0.6970 -0.0038 28 6 4.7801 -1.5896 -0.0093 29 8 2.2831 -1.0929 -0.0058 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 0.5094 0.8925 33 1 2.7209 3.3215 -0.8614 34 1 2.7426 3.3495 0.9228 35 1 5.0413 5.1151 -1.6703 36 1 5.5747 6.0500 -0.2333 37 1 6.4986 3.2269 -1.8571 38 1 7.6319 4.1482 -0.8397 39 1 7.2381 2.4613 -0.4304 40 1 4.2808 5.1335 2.0326 41 1 3.8785 6.7324 1.3612 42 1 2.1137 6.0866 2.9216 43 1 1.9164 4.5139 2.1057 44 1 -2.1830 6.4791 -0.4327 45 1 0.5545 6.3368 -0.9686 46 1 0.9038 4.6765 -0.4215 47 1 2.9351 6.8843 -0.9922 48 1 2.6938 5.3890 -1.9277 49 1 4.4641 -2.6328 -0.0151 50 1 5.3768 -1.3859 -0.8984 51 1 5.3777 -1.3959 0.8815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001086950732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:08 Heat of formation + Delta-G solvation = 9.328479 kcal Electronic energy + Delta-G solvation = -32735.533355 eV Core-core repulsion = 28637.091088 eV Total energy + Delta-G solvation = -4098.442267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.44490 -40.39261 -38.38539 -35.92113 -34.93958 -33.18651 -33.00459 -31.66718 -30.84042 -30.12221 -29.84086 -27.20790 -26.47203 -25.33428 -24.25898 -23.47398 -22.41934 -21.88281 -21.12445 -20.29985 -19.29494 -18.17922 -17.17700 -17.06355 -16.61791 -15.97371 -15.70149 -15.08942 -14.79066 -14.23151 -14.20431 -14.08116 -13.85580 -13.72356 -13.51155 -13.28956 -13.19666 -12.96721 -12.83639 -12.81862 -12.63383 -12.50913 -12.38523 -12.03530 -11.77309 -11.64177 -11.43855 -11.23764 -11.19878 -11.00209 -10.86593 -10.72047 -10.61685 -10.32681 -10.15768 -10.10950 -9.83503 -9.57302 -9.46943 -9.27933 -8.83508 -8.41985 -8.33366 -6.61164 -5.75198 -3.16877 1.07180 2.06320 2.43376 3.06137 3.37958 3.39228 3.46466 3.47182 3.88803 4.50472 4.52287 4.58262 4.82814 4.93470 4.96085 5.06455 5.28712 5.33408 5.34799 5.36377 5.38160 5.41112 5.42657 5.48254 5.64717 5.66370 5.74064 5.81164 5.83407 5.88527 5.93554 6.04194 6.10422 6.13694 6.21236 6.23841 6.29904 6.34282 6.40512 6.58749 6.64119 6.68983 6.72878 6.83293 6.91037 7.04440 7.42477 7.52022 7.66391 7.74374 7.83239 8.25331 8.48983 9.25539 9.89253 10.46323 11.32725 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.003727 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.014736 B = 7510.552004 C = 9357.910757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.446 5.446 4 C -0.068 4.068 5 C 0.616 3.384 6 O -0.545 6.545 7 N -0.596 5.596 8 C 0.125 3.875 9 C -0.059 4.059 10 C -0.124 4.124 11 C 0.136 3.864 12 H 0.075 0.925 13 C -0.163 4.163 14 C -0.119 4.119 15 C 0.145 3.855 16 N -0.590 5.590 17 C -0.250 4.250 18 H 0.064 0.936 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.288 1.288 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.171 3.829 26 C -0.125 4.125 27 C 0.028 3.972 28 C -0.062 4.062 29 O -0.200 6.200 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.048 0.952 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.019 0.981 44 H 0.252 0.748 45 H 0.086 0.914 46 H 0.022 0.978 47 H 0.058 0.942 48 H 0.049 0.951 49 H 0.075 0.925 50 H 0.096 0.904 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.649 -13.235 -2.031 17.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.015 4.015 3 N -0.175 5.175 4 C -0.188 4.188 5 C 0.404 3.596 6 O -0.424 6.424 7 N -0.327 5.327 8 C 0.003 3.997 9 C -0.060 4.060 10 C -0.162 4.162 11 C 0.033 3.967 12 H 0.093 0.907 13 C -0.221 4.221 14 C -0.158 4.158 15 C 0.019 3.981 16 N -0.312 5.312 17 C -0.380 4.380 18 H 0.082 0.918 19 C -0.196 4.196 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.215 1.215 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.045 3.955 26 C -0.165 4.165 27 C -0.029 4.029 28 C -0.119 4.119 29 O -0.088 6.088 30 H 0.105 0.895 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.093 0.907 34 H 0.099 0.901 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.103 0.897 40 H 0.067 0.933 41 H 0.080 0.920 42 H 0.071 0.929 43 H 0.037 0.963 44 H 0.062 0.938 45 H 0.104 0.896 46 H 0.040 0.960 47 H 0.077 0.923 48 H 0.067 0.933 49 H 0.094 0.906 50 H 0.115 0.885 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.819 -12.941 -2.106 16.998 hybrid contribution -0.514 0.250 0.043 0.573 sum 10.306 -12.691 -2.062 16.478 Atomic orbital electron populations 1.20330 0.80662 1.04476 1.05989 1.26370 0.96572 0.78074 1.00520 1.71002 1.00458 1.29309 1.16771 1.21466 0.92379 0.91977 1.13016 1.16291 0.86095 0.80427 0.76766 1.90701 1.24086 1.74810 1.52841 1.48446 1.09489 1.04089 1.70707 1.22246 0.83617 0.90265 1.03532 1.21012 0.94175 0.93765 0.97013 1.23016 0.96289 0.96325 1.00531 1.22007 0.87507 0.87679 0.99468 0.90691 1.22176 0.97265 1.02904 0.99742 1.21921 0.99460 1.00076 0.94336 1.20938 0.88242 0.95896 0.93058 1.44017 1.40150 1.43028 1.04027 1.19194 0.95613 1.06941 1.16246 0.91819 1.25000 0.96013 0.97585 1.00961 1.70038 1.19413 1.30333 1.34788 0.86333 0.79034 0.83755 0.77901 1.21541 1.21852 1.20526 1.20815 0.90985 0.98166 0.85506 1.22093 0.98790 0.99165 0.96408 1.23601 0.83959 0.94473 1.00845 1.20378 0.89535 0.96680 1.05281 1.84315 1.16253 1.38271 1.69952 0.89548 0.88019 0.87959 0.90748 0.90106 0.90825 0.90127 0.92878 0.92265 0.89665 0.93288 0.91980 0.92947 0.96319 0.93758 0.89555 0.96009 0.92285 0.93257 0.90592 0.88525 0.88494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.55 10.51 36.01 0.38 -0.17 16 2 C 0.19 2.61 8.30 -13.08 -0.11 2.50 16 3 N -0.45 -7.24 8.84 -7.65 -0.07 -7.31 16 4 C -0.07 -1.08 6.83 -83.02 -0.57 -1.65 16 5 C 0.62 10.15 7.63 -12.52 -0.10 10.06 16 6 O -0.54 -9.09 13.26 5.27 0.07 -9.02 16 7 N -0.60 -9.57 3.25 -164.32 -0.53 -10.10 16 8 C 0.13 2.15 3.71 -3.32 -0.01 2.14 16 9 C -0.06 -0.97 0.53 -154.09 -0.08 -1.05 16 10 C -0.12 -1.70 5.42 -24.75 -0.13 -1.84 16 11 C 0.14 1.91 3.45 -66.20 -0.23 1.68 16 12 H 0.08 1.04 7.74 -51.93 -0.40 0.64 16 13 C -0.16 -2.09 8.71 37.16 0.32 -1.77 16 14 C -0.12 -2.04 4.78 -26.94 -0.13 -2.17 16 15 C 0.15 3.02 6.22 -3.65 -0.02 3.00 16 16 N -0.59 -14.41 2.98 -172.17 -0.51 -14.93 16 17 C -0.25 -6.76 9.58 -15.06 -0.14 -6.90 16 18 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 19 C 0.00 0.08 4.90 -17.43 -0.09 -0.01 16 20 N -0.90 -25.59 11.19 55.49 0.62 -24.97 16 21 Si 0.90 21.46 29.59 -169.99 -5.03 16.43 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.17 3.96 5.05 -3.64 -0.02 3.95 16 26 C -0.13 -2.33 4.71 -26.94 -0.13 -2.46 16 27 C 0.03 0.37 7.44 -35.08 -0.26 0.11 16 28 C -0.06 -0.61 9.13 36.00 0.33 -0.28 16 29 O -0.20 -2.61 10.73 6.54 0.07 -2.54 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.07 1.38 7.05 -51.93 -0.37 1.02 16 34 H 0.08 1.55 5.72 -51.93 -0.30 1.25 16 35 H 0.07 1.00 7.93 -51.93 -0.41 0.59 16 36 H 0.08 1.01 8.01 -51.93 -0.42 0.59 16 37 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.08 1.21 5.89 -51.93 -0.31 0.91 16 40 H 0.05 0.77 7.47 -51.92 -0.39 0.38 16 41 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.05 1.08 7.93 -51.93 -0.41 0.67 16 43 H 0.02 0.41 6.53 -51.93 -0.34 0.07 16 44 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 45 H 0.09 2.27 6.02 -51.93 -0.31 1.95 16 46 H 0.02 0.54 7.47 -51.93 -0.39 0.15 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 48 H 0.05 0.85 8.10 -51.93 -0.42 0.43 16 49 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 50 H 0.10 0.93 8.08 -51.93 -0.42 0.51 16 51 H 0.10 0.94 8.08 -51.93 -0.42 0.52 16 LS Contribution 391.39 15.07 5.90 5.90 Total: -1.00 -31.20 391.39 -8.70 -39.90 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -8.23 Total: 1.52 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -0.98 Total: 5.13 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -0.49 Total: -57.31 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.14 Total: -11.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -31.20 -8.70 -39.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086950732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.225 kcal (2) G-P(sol) polarization free energy of solvation -31.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds