Wall clock time and date at job start Wed Apr 1 2020 05:27:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29935 * 125.37421 * 2 1 4 4 C 1.36066 * 108.47183 * 179.84595 * 3 2 1 5 5 C 1.47421 * 126.45019 * 180.16716 * 4 3 2 6 6 O 1.21613 * 120.00190 * 180.29793 * 5 4 3 7 7 N 1.34784 * 119.99947 * 0.29292 * 5 4 3 8 8 C 1.47172 * 125.65907 * 0.02804 * 7 5 4 9 9 C 1.53693 * 107.11082 * 181.46962 * 8 7 5 10 10 C 1.54514 * 103.64897 * 21.54085 * 9 8 7 11 11 C 1.47484 * 125.66298 * 179.71666 * 7 5 4 12 12 H 1.08999 * 110.35220 * 274.87852 * 11 7 5 13 13 C 1.53002 * 110.35022 * 37.16727 * 11 7 5 14 14 C 1.52279 * 110.63156 * 263.42940 * 9 8 7 15 15 C 1.53314 * 109.42052 * 296.22853 * 14 9 8 16 16 N 1.46920 * 108.70881 * 306.49004 * 15 14 9 17 17 C 1.36936 * 120.56524 * 234.21067 * 16 15 14 18 18 H 1.07994 * 119.99746 * 27.95575 * 17 16 15 19 19 C 1.38812 * 119.99960 * 207.94661 * 17 16 15 20 20 N 1.31621 * 120.00282 * 17.45036 * 19 17 16 21 21 Si 1.86796 * 120.00039 * 197.44784 * 19 17 16 22 22 H 1.48502 * 109.47106 * 90.00512 * 21 19 17 23 23 H 1.48498 * 109.47257 * 210.00412 * 21 19 17 24 24 H 1.48503 * 109.47049 * 330.00036 * 21 19 17 25 25 C 1.46937 * 118.87003 * 54.23604 * 16 15 14 26 26 C 1.52274 * 110.62872 * 139.65663 * 9 8 7 27 27 C 1.36093 * 107.10347 * 0.41198 * 4 3 2 28 28 C 1.50699 * 126.52274 * 179.71533 * 27 4 3 29 29 O 1.34046 * 125.37884 * 180.30663 * 2 1 3 30 30 H 1.09002 * 109.47098 * 179.71945 * 1 2 3 31 31 H 1.08998 * 109.47248 * 59.71805 * 1 2 3 32 32 H 1.09000 * 109.47117 * 299.71691 * 1 2 3 33 33 H 1.09004 * 109.90937 * 300.83935 * 8 7 5 34 34 H 1.08997 * 109.91010 * 61.91074 * 8 7 5 35 35 H 1.09001 * 111.01142 * 83.24094 * 10 9 8 36 36 H 1.08990 * 111.01720 * 207.08233 * 10 9 8 37 37 H 1.09003 * 109.47378 * 58.54544 * 13 11 7 38 38 H 1.08998 * 109.46839 * 178.54309 * 13 11 7 39 39 H 1.09000 * 109.47008 * 298.54263 * 13 11 7 40 40 H 1.09008 * 109.47831 * 56.21368 * 14 9 8 41 41 H 1.09000 * 109.47612 * 176.24136 * 14 9 8 42 42 H 1.08995 * 109.59478 * 186.72188 * 15 14 9 43 43 H 1.09001 * 109.59570 * 66.26063 * 15 14 9 44 44 H 0.97000 * 120.00606 * 179.97438 * 20 19 17 45 45 H 1.09000 * 109.60139 * 185.98914 * 25 16 15 46 46 H 1.08999 * 109.60238 * 65.52103 * 25 16 15 47 47 H 1.09004 * 109.47949 * 183.74073 * 26 9 8 48 48 H 1.08998 * 109.47763 * 303.78035 * 26 9 8 49 49 H 1.09007 * 109.46808 * 180.02562 * 28 27 4 50 50 H 1.08997 * 109.47696 * 300.01906 * 28 27 4 51 51 H 1.09001 * 109.47610 * 60.02188 * 28 27 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6639 0.0035 5 6 4.7439 1.5438 0.0082 6 8 5.8604 1.0618 0.0055 7 7 4.5879 2.8826 0.0153 8 6 3.3008 3.5963 0.0197 9 6 3.6174 5.1000 -0.0102 10 6 5.0520 5.1592 -0.5812 11 6 5.6785 3.8753 0.0265 12 1 6.0123 4.0602 1.0475 13 6 6.8457 3.3933 -0.8373 14 6 3.5867 5.6828 1.3963 15 6 2.1683 5.5652 1.9660 16 7 1.2272 6.1756 1.0172 17 6 0.3630 7.1558 1.4266 18 1 0.6276 7.7979 2.2536 19 6 -0.8529 7.3241 0.7785 20 7 -1.3332 6.3617 0.0200 21 14 -1.8076 8.9166 0.9829 22 1 -1.3958 9.8793 -0.0701 23 1 -3.2617 8.6413 0.8604 24 1 -1.5245 9.4953 2.3209 25 6 1.2287 5.7161 -0.3785 26 6 2.6533 5.8330 -0.9331 27 6 3.5659 -0.6970 -0.0038 28 6 4.7801 -1.5896 -0.0093 29 8 2.2831 -1.0929 -0.0058 30 1 -0.3633 -1.0277 -0.0050 31 1 -0.3633 0.5182 -0.8874 32 1 -0.3633 0.5094 0.8925 33 1 2.7209 3.3215 -0.8614 34 1 2.7426 3.3495 0.9228 35 1 5.0413 5.1151 -1.6703 36 1 5.5747 6.0500 -0.2333 37 1 6.4986 3.2269 -1.8571 38 1 7.6319 4.1482 -0.8397 39 1 7.2381 2.4613 -0.4304 40 1 4.2808 5.1335 2.0326 41 1 3.8785 6.7324 1.3612 42 1 2.1137 6.0866 2.9216 43 1 1.9164 4.5139 2.1057 44 1 -2.1830 6.4791 -0.4327 45 1 0.5545 6.3368 -0.9686 46 1 0.9038 4.6765 -0.4215 47 1 2.9351 6.8843 -0.9922 48 1 2.6938 5.3890 -1.9277 49 1 4.4641 -2.6328 -0.0151 50 1 5.3768 -1.3859 -0.8984 51 1 5.3777 -1.3959 0.8815 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086950732.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:07 Heat of formation + Delta-G solvation = -9.772398 kcal Electronic energy + Delta-G solvation = -32736.361631 eV Core-core repulsion = 28637.091088 eV Total energy + Delta-G solvation = -4099.270543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.50855 -41.69328 -39.75895 -37.49160 -36.04259 -34.77598 -34.09655 -32.92795 -32.50345 -31.54063 -30.96676 -28.77189 -27.58799 -26.54364 -25.97198 -24.65249 -23.95170 -23.14814 -22.60762 -21.55932 -20.50290 -19.72430 -18.47946 -18.30274 -18.12895 -17.26006 -16.84814 -16.77693 -16.26256 -15.78444 -15.47648 -15.35652 -15.15594 -14.90198 -14.82571 -14.68298 -14.41942 -14.35654 -14.14302 -13.87228 -13.61688 -13.51051 -13.30015 -13.22886 -13.18856 -13.04920 -12.97125 -12.78106 -12.55999 -12.45455 -12.37404 -12.30170 -12.00038 -11.95888 -11.83637 -11.72841 -11.36698 -11.06134 -10.93231 -10.80046 -10.46444 -9.95114 -9.55829 -8.61070 -7.81970 -5.26967 -0.00715 0.93722 1.43502 1.48897 1.50459 1.58662 1.88634 2.17110 2.54518 2.86164 3.29993 3.39746 3.54516 3.58088 3.71613 3.80582 3.83708 4.11743 4.13543 4.22138 4.30947 4.32930 4.44095 4.56729 4.57164 4.58957 4.60341 4.64654 4.72227 4.73303 4.79336 4.80940 4.88178 4.90548 4.93175 4.96802 5.06127 5.08057 5.13574 5.18186 5.22181 5.26510 5.33466 5.37985 5.42834 5.55388 5.57562 5.69985 5.82548 6.37098 6.43922 6.48550 7.02752 7.20197 7.91554 8.43882 9.23530 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011927 B = 0.003727 C = 0.002991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2347.014736 B = 7510.552004 C = 9357.910757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.193 3.807 3 N -0.484 5.484 4 C -0.107 4.107 5 C 0.611 3.389 6 O -0.550 6.550 7 N -0.600 5.600 8 C 0.144 3.856 9 C -0.057 4.057 10 C -0.110 4.110 11 C 0.131 3.869 12 H 0.082 0.918 13 C -0.154 4.154 14 C -0.105 4.105 15 C 0.143 3.857 16 N -0.605 5.605 17 C -0.262 4.262 18 H 0.064 0.936 19 C -0.047 4.047 20 N -0.931 5.931 21 Si 0.963 3.037 22 H -0.286 1.286 23 H -0.296 1.296 24 H -0.271 1.271 25 C 0.182 3.818 26 C -0.111 4.111 27 C 0.040 3.960 28 C -0.060 4.060 29 O -0.196 6.196 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.080 0.920 36 H 0.105 0.895 37 H 0.045 0.955 38 H 0.086 0.914 39 H 0.070 0.930 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.051 0.949 43 H 0.006 0.994 44 H 0.249 0.751 45 H 0.052 0.948 46 H -0.004 1.004 47 H 0.062 0.938 48 H 0.061 0.939 49 H 0.104 0.896 50 H 0.100 0.900 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.466 -13.316 -1.997 18.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.226 4.226 5 C 0.400 3.600 6 O -0.431 6.431 7 N -0.332 5.332 8 C 0.021 3.979 9 C -0.058 4.058 10 C -0.148 4.148 11 C 0.030 3.970 12 H 0.100 0.900 13 C -0.211 4.211 14 C -0.144 4.144 15 C 0.017 3.983 16 N -0.328 5.328 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.242 4.242 20 N -0.577 5.577 21 Si 0.791 3.209 22 H -0.213 1.213 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.056 3.944 26 C -0.151 4.151 27 C -0.017 4.017 28 C -0.116 4.116 29 O -0.083 6.083 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.098 0.902 36 H 0.123 0.877 37 H 0.065 0.935 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.069 0.931 43 H 0.024 0.976 44 H 0.058 0.942 45 H 0.070 0.930 46 H 0.014 0.986 47 H 0.080 0.920 48 H 0.080 0.920 49 H 0.123 0.877 50 H 0.118 0.882 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 12.675 -13.019 -2.059 18.287 hybrid contribution -1.117 0.171 0.073 1.132 sum 11.558 -12.849 -1.986 17.396 Atomic orbital electron populations 1.20511 0.78317 1.06600 1.05814 1.27054 0.97709 0.77698 0.99169 1.70969 1.01213 1.30887 1.18354 1.21613 0.92265 0.93127 1.15547 1.16464 0.86323 0.80655 0.76549 1.90684 1.24227 1.74913 1.53247 1.48505 1.09468 1.04367 1.70815 1.21857 0.83906 0.90805 1.01290 1.20930 0.95746 0.92711 0.96417 1.22966 0.93742 0.97208 1.00855 1.22203 0.87364 0.87215 1.00238 0.89980 1.22079 0.97259 1.03006 0.98760 1.21759 0.96998 1.00881 0.94730 1.21040 0.89774 0.94732 0.92723 1.44246 1.40491 1.43015 1.05048 1.19504 0.96080 1.07481 1.16144 0.91786 1.25714 0.97035 1.00316 1.01166 1.70192 1.19635 1.32021 1.35863 0.85337 0.77246 0.80172 0.78104 1.21271 1.22285 1.19540 1.20559 0.93201 0.95636 0.85001 1.21884 0.96109 0.99810 0.97257 1.24238 0.84831 0.94252 0.98426 1.20542 0.87977 0.97638 1.05420 1.84345 1.16206 1.37978 1.69807 0.86279 0.87899 0.88242 0.92793 0.92656 0.90157 0.87697 0.93540 0.89554 0.91128 0.91199 0.91250 0.93071 0.97616 0.94212 0.92994 0.98581 0.91973 0.92018 0.87688 0.88173 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.51 71.24 0.75 -0.31 16 2 C 0.19 5.26 8.30 88.39 0.73 5.99 16 3 N -0.48 -16.31 8.84 -293.04 -2.59 -18.90 16 4 C -0.11 -3.42 6.83 40.41 0.28 -3.15 16 5 C 0.61 20.09 7.63 86.66 0.66 20.75 16 6 O -0.55 -17.97 13.26 -4.07 -0.05 -18.02 16 7 N -0.60 -18.97 3.25 -792.04 -2.57 -21.54 16 8 C 0.14 5.01 3.71 86.48 0.32 5.33 16 9 C -0.06 -1.83 0.53 -51.91 -0.03 -1.86 16 10 C -0.11 -2.71 5.42 31.88 0.17 -2.54 16 11 C 0.13 3.39 3.45 45.57 0.16 3.55 16 12 H 0.08 2.03 7.74 -2.39 -0.02 2.01 16 13 C -0.15 -3.56 8.71 71.98 0.63 -2.93 16 14 C -0.10 -3.45 4.78 30.46 0.15 -3.31 16 15 C 0.14 6.00 6.22 86.40 0.54 6.54 16 16 N -0.60 -30.20 2.98 -698.62 -2.08 -32.29 16 17 C -0.26 -14.35 9.58 84.03 0.80 -13.55 16 18 H 0.06 3.44 7.89 -2.91 -0.02 3.42 16 19 C -0.05 -2.59 4.90 84.86 0.42 -2.17 16 20 N -0.93 -54.62 11.19 21.65 0.24 -54.38 16 21 Si 0.96 44.65 29.59 68.60 2.03 46.68 16 22 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 23 H -0.30 -13.83 7.11 99.48 0.71 -13.12 16 24 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.18 8.72 5.05 86.40 0.44 9.16 16 26 C -0.11 -4.11 4.71 30.46 0.14 -3.97 16 27 C 0.04 1.04 7.44 25.19 0.19 1.22 16 28 C -0.06 -1.06 9.13 71.24 0.65 -0.41 16 29 O -0.20 -4.97 10.73 0.49 0.01 -4.96 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 33 H 0.05 2.09 7.05 -2.39 -0.02 2.07 16 34 H 0.06 2.21 5.72 -2.39 -0.01 2.19 16 35 H 0.08 1.93 7.93 -2.39 -0.02 1.91 16 36 H 0.10 2.15 8.01 -2.39 -0.02 2.13 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 1.88 5.89 -2.39 -0.01 1.86 16 40 H 0.07 2.04 7.47 -2.38 -0.02 2.02 16 41 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 42 H 0.05 2.12 7.93 -2.39 -0.02 2.10 16 43 H 0.01 0.27 6.53 -2.39 -0.02 0.25 16 44 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 45 H 0.05 2.84 6.02 -2.39 -0.01 2.82 16 46 H 0.00 -0.20 7.47 -2.39 -0.02 -0.22 16 47 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 48 H 0.06 2.11 8.10 -2.39 -0.02 2.09 16 49 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 50 H 0.10 1.76 8.08 -2.39 -0.02 1.74 16 51 H 0.10 1.77 8.08 -2.39 -0.02 1.75 16 Total: -1.00 -69.61 391.39 2.90 -66.72 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: 0.93 Total: 18.35 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: 6.99 Total: 18.35 kcal Atomic # 7 Polarization: -120.11 SS G_CDS: -7.00 Total: -127.11 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: -0.05 Total: -22.99 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -69.61 2.90 -66.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086950732.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.943 kcal (2) G-P(sol) polarization free energy of solvation -69.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.715 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds