Wall clock time and date at job start Wed Apr 1 2020 04:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30013 * 127.33512 * 2 1 4 4 O 1.20658 * 112.29811 * 180.27306 * 3 2 1 5 5 C 1.33486 * 113.15873 * 359.73646 * 4 3 2 6 6 C 1.50703 * 126.82988 * 179.97438 * 5 4 3 7 7 C 1.37358 * 106.34449 * 359.97438 * 5 4 3 8 8 C 1.47399 * 128.56753 * 179.97438 * 7 5 4 9 9 O 1.21599 * 120.00425 * 89.99515 * 8 7 5 10 10 N 1.34779 * 119.99629 * 269.99571 * 8 7 5 11 11 C 1.46503 * 120.00013 * 180.02562 * 10 8 7 12 12 H 1.08991 * 113.34624 * 22.06472 * 11 10 8 13 13 C 1.50004 * 114.12214 * 249.13958 * 11 10 8 14 14 H 1.09000 * 112.50440 * 170.16386 * 13 11 10 15 15 C 1.51205 * 125.53939 * 27.70598 * 13 11 10 16 16 C 1.54096 * 106.19589 * 198.79788 * 15 13 11 17 17 C 1.52499 * 112.66849 * 55.43492 * 16 15 13 18 18 N 1.49731 * 111.78508 * 312.83817 * 17 16 15 19 19 C 1.36936 * 123.95649 * 231.84588 * 18 17 16 20 20 H 1.08002 * 119.99936 * 147.84129 * 19 18 17 21 21 C 1.38814 * 120.00052 * 327.83923 * 19 18 17 22 22 N 1.31612 * 120.00052 * 165.10730 * 21 19 18 23 23 Si 1.86802 * 119.99639 * 345.10736 * 21 19 18 24 24 H 1.48494 * 109.47510 * 85.35549 * 23 21 19 25 25 H 1.48506 * 109.46610 * 205.36035 * 23 21 19 26 26 H 1.48507 * 109.46964 * 325.35219 * 23 21 19 27 27 C 1.45385 * 112.87364 * 52.42006 * 18 17 16 28 28 H 1.08994 * 111.70933 * 58.93908 * 27 18 17 29 29 C 1.49966 * 126.67008 * 203.43824 * 27 18 17 30 30 C 1.52999 * 114.08499 * 253.26374 * 29 27 18 31 31 C 1.53000 * 114.08445 * 25.68306 * 29 27 18 32 32 H 1.09001 * 109.46656 * 270.14406 * 1 2 3 33 33 H 1.08998 * 109.47019 * 30.14214 * 1 2 3 34 34 H 1.08998 * 109.46992 * 150.14588 * 1 2 3 35 35 H 1.09002 * 109.47625 * 269.99871 * 6 5 4 36 36 H 1.09005 * 109.47305 * 30.00173 * 6 5 4 37 37 H 1.09000 * 109.47335 * 150.00073 * 6 5 4 38 38 H 0.97006 * 119.99904 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.10147 * 317.96315 * 15 13 11 40 40 H 1.08996 * 110.10403 * 79.62931 * 15 13 11 41 41 H 1.08998 * 108.84379 * 176.25816 * 16 15 13 42 42 H 1.09000 * 108.84026 * 294.72253 * 16 15 13 43 43 H 1.08994 * 109.00164 * 73.83634 * 17 16 15 44 44 H 1.09003 * 108.99842 * 192.67993 * 17 16 15 45 45 H 0.97002 * 120.00056 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.47064 * 60.00063 * 30 29 27 47 47 H 1.09001 * 109.47429 * 180.02562 * 30 29 27 48 48 H 1.08995 * 109.47169 * 300.00212 * 30 29 27 49 49 H 1.09001 * 109.46884 * 48.60092 * 31 29 27 50 50 H 1.09003 * 109.46925 * 168.59891 * 31 29 27 51 51 H 1.08993 * 109.47626 * 288.60191 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0042 6 6 4.9712 -1.3247 -0.0102 7 6 2.3992 -1.1696 0.0035 8 6 2.0401 -2.5992 0.0072 9 8 1.8979 -3.1877 1.0618 10 7 1.8693 -3.2541 -1.1583 11 6 1.5118 -4.6749 -1.1547 12 1 1.0470 -5.0009 -0.2244 13 6 2.6002 -5.5821 -1.6471 14 1 2.3756 -6.6348 -1.4750 15 6 4.0835 -5.3003 -1.5651 16 6 4.7560 -6.2362 -2.5881 17 6 4.1886 -6.0746 -3.9943 18 7 2.6913 -6.0691 -3.9921 19 6 1.9223 -6.8747 -4.7889 20 1 0.9631 -7.2249 -4.4371 21 6 2.3756 -7.2412 -6.0487 22 7 1.7972 -8.2320 -6.6937 23 14 3.8065 -6.3280 -6.8285 24 1 5.0855 -6.9199 -6.3607 25 1 3.7197 -6.4418 -8.3066 26 1 3.7517 -4.8962 -6.4382 27 6 2.1310 -5.1043 -3.0599 28 1 2.4591 -4.0894 -3.2844 29 6 0.7668 -5.1473 -2.4386 30 6 -0.2111 -4.1173 -3.0076 31 6 0.1724 -6.5532 -2.3339 32 1 -0.3633 0.0026 1.0277 33 1 -0.3633 0.8887 -0.5160 34 1 -0.3633 -0.8913 -0.5116 35 1 5.2843 -1.5009 -1.0393 36 1 5.7202 -0.7178 0.4986 37 1 4.8652 -2.2790 0.5057 38 1 1.9823 -2.7846 -1.9996 39 1 4.2820 -4.2598 -1.8223 40 1 4.4510 -5.5161 -0.5619 41 1 5.8243 -6.0214 -2.6126 42 1 4.6122 -7.2683 -2.2686 43 1 4.5525 -5.1388 -4.4184 44 1 4.5338 -6.9025 -4.6136 45 1 2.1142 -8.4883 -7.5739 46 1 -0.3397 -4.2900 -4.0762 47 1 -1.1736 -4.2139 -2.5052 48 1 0.1833 -3.1141 -2.8465 49 1 0.9102 -7.2282 -1.9003 50 1 -0.7134 -6.5268 -1.6991 51 1 -0.1032 -6.9061 -3.3276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087272121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:43 Heat of formation + Delta-G solvation = 98.569160 kcal Electronic energy + Delta-G solvation = -32977.100467 eV Core-core repulsion = 28882.527966 eV Total energy + Delta-G solvation = -4094.572500 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.07578 -41.39147 -38.96389 -35.56111 -34.77796 -33.87567 -33.39634 -32.86506 -30.85379 -29.58529 -29.03752 -28.31566 -27.17026 -26.19576 -25.29218 -24.06893 -22.43742 -21.24321 -20.89570 -20.22300 -19.51223 -18.36858 -18.07575 -17.78512 -16.87339 -16.51574 -15.67305 -15.27888 -15.02267 -14.54326 -14.36207 -14.10532 -13.99380 -13.79142 -13.76879 -13.49679 -13.42430 -13.26066 -13.14356 -12.97040 -12.85900 -12.67207 -12.54902 -12.42742 -11.72783 -11.59785 -11.50843 -11.34382 -11.31682 -11.23344 -10.71751 -10.56208 -10.52864 -10.30912 -10.13173 -10.06247 -9.88216 -9.81019 -9.59771 -9.53968 -9.06879 -8.84732 -8.47424 -6.80895 -5.97521 -3.39912 1.08293 1.69146 2.29965 2.60751 3.16060 3.26863 3.42794 3.44870 3.88838 4.01368 4.47478 4.51272 4.60441 4.67192 4.71775 4.93859 4.96457 5.07383 5.10855 5.16890 5.21092 5.29008 5.33074 5.41240 5.42206 5.46535 5.59575 5.61678 5.70761 5.75508 5.79747 5.83604 5.92721 5.98536 6.04797 6.16677 6.27269 6.32250 6.35348 6.36901 6.45285 6.51503 6.57534 6.66888 6.71319 6.78923 6.84334 7.06524 7.42558 7.89244 7.99641 8.08346 8.37621 8.86093 9.67115 10.17581 11.17887 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.003593 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.935831 B = 7791.861999 C = 8291.309755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.056 3.944 3 N -0.357 5.357 4 O 0.094 5.906 5 C 0.021 3.979 6 C -0.081 4.081 7 C -0.252 4.252 8 C 0.602 3.398 9 O -0.526 6.526 10 N -0.689 5.689 11 C 0.137 3.863 12 H 0.102 0.898 13 C -0.171 4.171 14 H 0.108 0.892 15 C -0.085 4.085 16 C -0.129 4.129 17 C 0.122 3.878 18 N -0.588 5.588 19 C -0.254 4.254 20 H 0.100 0.900 21 C 0.026 3.974 22 N -0.912 5.912 23 Si 0.885 3.115 24 H -0.287 1.287 25 H -0.305 1.305 26 H -0.274 1.274 27 C 0.150 3.850 28 H 0.046 0.954 29 C -0.062 4.062 30 C -0.135 4.135 31 C -0.123 4.123 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.403 0.597 39 H 0.051 0.949 40 H 0.049 0.951 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.022 0.978 44 H 0.070 0.930 45 H 0.262 0.738 46 H 0.066 0.934 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.043 0.957 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.074 13.305 12.557 18.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.064 5.064 4 O 0.033 5.967 5 C -0.042 4.042 6 C -0.139 4.139 7 C -0.259 4.259 8 C 0.386 3.614 9 O -0.402 6.402 10 N -0.340 5.340 11 C 0.031 3.969 12 H 0.120 0.880 13 C -0.192 4.192 14 H 0.126 0.874 15 C -0.123 4.123 16 C -0.168 4.168 17 C -0.002 4.002 18 N -0.312 5.312 19 C -0.382 4.382 20 H 0.117 0.883 21 C -0.173 4.173 22 N -0.555 5.555 23 Si 0.716 3.284 24 H -0.215 1.215 25 H -0.233 1.233 26 H -0.200 1.200 27 C 0.042 3.958 28 H 0.063 0.937 29 C -0.063 4.063 30 C -0.193 4.193 31 C -0.180 4.180 32 H 0.104 0.896 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.239 0.761 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.040 0.960 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.085 0.915 47 H 0.071 0.929 48 H 0.065 0.935 49 H 0.083 0.917 50 H 0.062 0.938 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 1.762 14.037 13.090 19.275 hybrid contribution 0.969 -0.028 -1.118 1.480 sum 2.732 14.009 11.973 18.630 Atomic orbital electron populations 1.20235 0.85110 1.04241 1.03956 1.24756 0.98591 0.86494 1.00808 1.73609 0.89138 1.23367 1.20333 1.84527 1.21509 1.22618 1.68008 1.24643 0.97453 0.83689 0.98451 1.20514 0.88941 0.99500 1.04906 1.21957 0.92864 0.95404 1.15712 1.16790 0.76847 0.83587 0.84141 1.90818 1.50294 1.67956 1.31122 1.45709 1.69337 1.10960 1.08007 1.21569 0.97205 0.78946 0.99156 0.88017 1.23387 0.94098 1.00238 1.01440 0.87443 1.21020 0.94859 0.98609 0.97780 1.21889 0.98165 0.99923 0.96839 1.21621 0.84468 0.99362 0.94760 1.44511 0.99597 1.40274 1.46774 1.19113 1.03111 1.22161 0.93832 0.88274 1.25464 0.97842 0.97760 0.96247 1.69768 1.43114 1.27771 1.14809 0.86932 0.82630 0.81184 0.77655 1.21474 1.23303 1.19979 1.21742 0.93203 0.91993 0.88893 0.93726 1.21862 0.94298 0.96772 0.93355 1.21680 0.98428 0.97319 1.01842 1.21786 0.99500 0.93248 1.03505 0.89598 0.89895 0.89653 0.88476 0.89077 0.88523 0.76070 0.93055 0.93259 0.92894 0.92128 0.96002 0.91165 0.92781 0.91498 0.92907 0.93497 0.91688 0.93799 0.89607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.49 36.01 0.38 -0.32 16 2 C 0.06 0.65 7.59 -79.76 -0.61 0.05 16 3 N -0.36 -4.45 12.01 34.78 0.42 -4.04 16 4 O 0.09 1.08 11.06 18.67 0.21 1.29 16 5 C 0.02 0.22 7.55 -34.63 -0.26 -0.04 16 6 C -0.08 -0.59 10.33 36.01 0.37 -0.22 16 7 C -0.25 -3.03 6.24 -102.89 -0.64 -3.68 16 8 C 0.60 8.06 7.60 -12.53 -0.10 7.97 16 9 O -0.53 -8.79 16.70 5.28 0.09 -8.70 16 10 N -0.69 -8.60 4.11 -58.75 -0.24 -8.85 16 11 C 0.14 1.92 3.98 -71.82 -0.29 1.63 16 12 H 0.10 1.51 7.45 -51.93 -0.39 1.12 16 13 C -0.17 -2.64 3.00 -95.83 -0.29 -2.93 16 14 H 0.11 1.83 5.87 -51.93 -0.30 1.52 16 15 C -0.08 -1.23 5.91 -27.06 -0.16 -1.39 16 16 C -0.13 -2.09 5.90 -26.42 -0.16 -2.25 16 17 C 0.12 2.45 4.27 -2.50 -0.01 2.44 16 18 N -0.59 -12.65 2.64 -168.28 -0.44 -13.10 16 19 C -0.25 -6.49 9.80 -15.06 -0.15 -6.64 16 20 H 0.10 2.63 4.86 -52.49 -0.25 2.38 16 21 C 0.03 0.71 5.38 -17.43 -0.09 0.62 16 22 N -0.91 -26.81 13.97 55.49 0.78 -26.04 16 23 Si 0.88 21.65 24.45 -169.99 -4.16 17.50 16 24 H -0.29 -6.80 6.40 56.52 0.36 -6.43 16 25 H -0.30 -7.70 7.11 56.52 0.40 -7.30 16 26 H -0.27 -6.61 6.82 56.52 0.39 -6.23 16 27 C 0.15 2.61 2.90 -72.12 -0.21 2.40 16 28 H 0.05 0.77 6.49 -51.93 -0.34 0.44 16 29 C -0.06 -0.94 1.39 -159.16 -0.22 -1.16 16 30 C -0.14 -1.86 9.22 37.16 0.34 -1.52 16 31 C -0.12 -1.98 8.14 37.16 0.30 -1.68 16 32 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.10 0.76 8.11 -51.93 -0.42 0.34 16 38 H 0.40 4.68 6.34 -40.82 -0.26 4.42 16 39 H 0.05 0.70 7.91 -51.93 -0.41 0.29 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.44 7.13 -51.93 -0.37 0.07 16 44 H 0.07 1.57 4.95 -51.93 -0.26 1.31 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 46 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 47 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.57 6.46 -51.93 -0.34 0.23 16 49 H 0.06 1.08 5.89 -51.93 -0.31 0.78 16 50 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.09 1.61 5.61 -51.93 -0.29 1.32 16 LS Contribution 389.94 15.07 5.88 5.88 Total: -1.00 -31.20 389.94 -7.04 -38.24 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -7.78 Total: 4.54 kcal Atomic # 6 Polarization: -4.94 SS G_CDS: -1.78 Total: -6.72 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: 0.51 Total: -52.02 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: 0.29 Total: -7.41 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.16 Total: 17.50 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.20 -7.04 -38.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.810 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds