Wall clock time and date at job start Wed Apr 1 2020 04:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30013 * 127.33512 * 2 1 4 4 O 1.20658 * 112.29811 * 180.27306 * 3 2 1 5 5 C 1.33486 * 113.15873 * 359.73646 * 4 3 2 6 6 C 1.50703 * 126.82988 * 179.97438 * 5 4 3 7 7 C 1.37358 * 106.34449 * 359.97438 * 5 4 3 8 8 C 1.47399 * 128.56753 * 179.97438 * 7 5 4 9 9 O 1.21599 * 120.00425 * 89.99515 * 8 7 5 10 10 N 1.34779 * 119.99629 * 269.99571 * 8 7 5 11 11 C 1.46503 * 120.00013 * 180.02562 * 10 8 7 12 12 H 1.08991 * 113.34624 * 22.06472 * 11 10 8 13 13 C 1.50004 * 114.12214 * 249.13958 * 11 10 8 14 14 H 1.09000 * 112.50440 * 170.16386 * 13 11 10 15 15 C 1.51205 * 125.53939 * 27.70598 * 13 11 10 16 16 C 1.54096 * 106.19589 * 198.79788 * 15 13 11 17 17 C 1.52499 * 112.66849 * 55.43492 * 16 15 13 18 18 N 1.49731 * 111.78508 * 312.83817 * 17 16 15 19 19 C 1.36936 * 123.95649 * 231.84588 * 18 17 16 20 20 H 1.08002 * 119.99936 * 147.84129 * 19 18 17 21 21 C 1.38814 * 120.00052 * 327.83923 * 19 18 17 22 22 N 1.31612 * 120.00052 * 165.10730 * 21 19 18 23 23 Si 1.86802 * 119.99639 * 345.10736 * 21 19 18 24 24 H 1.48494 * 109.47510 * 85.35549 * 23 21 19 25 25 H 1.48506 * 109.46610 * 205.36035 * 23 21 19 26 26 H 1.48507 * 109.46964 * 325.35219 * 23 21 19 27 27 C 1.45385 * 112.87364 * 52.42006 * 18 17 16 28 28 H 1.08994 * 111.70933 * 58.93908 * 27 18 17 29 29 C 1.49966 * 126.67008 * 203.43824 * 27 18 17 30 30 C 1.52999 * 114.08499 * 253.26374 * 29 27 18 31 31 C 1.53000 * 114.08445 * 25.68306 * 29 27 18 32 32 H 1.09001 * 109.46656 * 270.14406 * 1 2 3 33 33 H 1.08998 * 109.47019 * 30.14214 * 1 2 3 34 34 H 1.08998 * 109.46992 * 150.14588 * 1 2 3 35 35 H 1.09002 * 109.47625 * 269.99871 * 6 5 4 36 36 H 1.09005 * 109.47305 * 30.00173 * 6 5 4 37 37 H 1.09000 * 109.47335 * 150.00073 * 6 5 4 38 38 H 0.97006 * 119.99904 * 359.97438 * 10 8 7 39 39 H 1.09002 * 110.10147 * 317.96315 * 15 13 11 40 40 H 1.08996 * 110.10403 * 79.62931 * 15 13 11 41 41 H 1.08998 * 108.84379 * 176.25816 * 16 15 13 42 42 H 1.09000 * 108.84026 * 294.72253 * 16 15 13 43 43 H 1.08994 * 109.00164 * 73.83634 * 17 16 15 44 44 H 1.09003 * 108.99842 * 192.67993 * 17 16 15 45 45 H 0.97002 * 120.00056 * 180.02562 * 22 21 19 46 46 H 1.09005 * 109.47064 * 60.00063 * 30 29 27 47 47 H 1.09001 * 109.47429 * 180.02562 * 30 29 27 48 48 H 1.08995 * 109.47169 * 300.00212 * 30 29 27 49 49 H 1.09001 * 109.46884 * 48.60092 * 31 29 27 50 50 H 1.09003 * 109.46925 * 168.59891 * 31 29 27 51 51 H 1.08993 * 109.47626 * 288.60191 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2955 1.0337 0.0000 4 8 3.4608 0.7207 -0.0053 5 6 3.6494 -0.6008 -0.0042 6 6 4.9712 -1.3247 -0.0102 7 6 2.3992 -1.1696 0.0035 8 6 2.0401 -2.5992 0.0072 9 8 1.8979 -3.1877 1.0618 10 7 1.8693 -3.2541 -1.1583 11 6 1.5118 -4.6749 -1.1547 12 1 1.0470 -5.0009 -0.2244 13 6 2.6002 -5.5821 -1.6471 14 1 2.3756 -6.6348 -1.4750 15 6 4.0835 -5.3003 -1.5651 16 6 4.7560 -6.2362 -2.5881 17 6 4.1886 -6.0746 -3.9943 18 7 2.6913 -6.0691 -3.9921 19 6 1.9223 -6.8747 -4.7889 20 1 0.9631 -7.2249 -4.4371 21 6 2.3756 -7.2412 -6.0487 22 7 1.7972 -8.2320 -6.6937 23 14 3.8065 -6.3280 -6.8285 24 1 5.0855 -6.9199 -6.3607 25 1 3.7197 -6.4418 -8.3066 26 1 3.7517 -4.8962 -6.4382 27 6 2.1310 -5.1043 -3.0599 28 1 2.4591 -4.0894 -3.2844 29 6 0.7668 -5.1473 -2.4386 30 6 -0.2111 -4.1173 -3.0076 31 6 0.1724 -6.5532 -2.3339 32 1 -0.3633 0.0026 1.0277 33 1 -0.3633 0.8887 -0.5160 34 1 -0.3633 -0.8913 -0.5116 35 1 5.2843 -1.5009 -1.0393 36 1 5.7202 -0.7178 0.4986 37 1 4.8652 -2.2790 0.5057 38 1 1.9823 -2.7846 -1.9996 39 1 4.2820 -4.2598 -1.8223 40 1 4.4510 -5.5161 -0.5619 41 1 5.8243 -6.0214 -2.6126 42 1 4.6122 -7.2683 -2.2686 43 1 4.5525 -5.1388 -4.4184 44 1 4.5338 -6.9025 -4.6136 45 1 2.1142 -8.4883 -7.5739 46 1 -0.3397 -4.2900 -4.0762 47 1 -1.1736 -4.2139 -2.5052 48 1 0.1833 -3.1141 -2.8465 49 1 0.9102 -7.2282 -1.9003 50 1 -0.7134 -6.5268 -1.6991 51 1 -0.1032 -6.9061 -3.3276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087272121.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:42 Heat of formation + Delta-G solvation = 79.675323 kcal Electronic energy + Delta-G solvation = -32977.919765 eV Core-core repulsion = 28882.527966 eV Total energy + Delta-G solvation = -4095.391799 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -45.92485 -42.66817 -40.11155 -37.04128 -35.62756 -34.89193 -34.67124 -34.20056 -32.62003 -30.87649 -29.78491 -29.06344 -28.45333 -27.56843 -26.76309 -25.20164 -23.87971 -22.53591 -22.10377 -21.11834 -20.71992 -19.68264 -19.01292 -18.75444 -18.65554 -17.44049 -17.02673 -16.82762 -16.12303 -15.84587 -15.60679 -15.44658 -15.20711 -15.04672 -14.78886 -14.53708 -14.38873 -14.23236 -14.16578 -14.04843 -14.00448 -13.91622 -13.54824 -13.40912 -13.30174 -13.12467 -12.86779 -12.77692 -12.65174 -12.24548 -12.12801 -11.96688 -11.95641 -11.66079 -11.45514 -11.39881 -11.24389 -11.23200 -10.95334 -10.64605 -10.42221 -10.26319 -10.01380 -8.57934 -8.06580 -5.42963 0.27417 0.83757 1.27319 1.31013 1.41258 1.49075 1.74824 2.20153 2.47794 3.05607 3.09353 3.20931 3.24111 3.44207 3.65237 3.71498 3.86558 3.91531 4.02593 4.14805 4.24334 4.31565 4.41362 4.45279 4.49577 4.56301 4.57480 4.60201 4.63559 4.64567 4.70167 4.78504 4.85592 4.89763 4.97266 5.04034 5.06680 5.07874 5.10543 5.14238 5.15370 5.19155 5.27000 5.35282 5.45166 5.46431 5.53438 5.74992 5.97745 6.36481 6.40301 6.95996 7.04744 7.17550 7.68564 8.25906 9.12628 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014181 B = 0.003593 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1973.935831 B = 7791.861999 C = 8291.309755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.053 3.947 3 N -0.378 5.378 4 O 0.090 5.910 5 C 0.037 3.963 6 C -0.083 4.083 7 C -0.278 4.278 8 C 0.616 3.384 9 O -0.559 6.559 10 N -0.679 5.679 11 C 0.158 3.842 12 H 0.101 0.899 13 C -0.159 4.159 14 H 0.091 0.909 15 C -0.079 4.079 16 C -0.122 4.122 17 C 0.117 3.883 18 N -0.603 5.603 19 C -0.227 4.227 20 H 0.082 0.918 21 C -0.037 4.037 22 N -0.963 5.963 23 Si 0.939 3.061 24 H -0.277 1.277 25 H -0.320 1.320 26 H -0.265 1.265 27 C 0.132 3.868 28 H 0.059 0.941 29 C -0.064 4.064 30 C -0.131 4.131 31 C -0.118 4.118 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.114 0.886 36 H 0.113 0.887 37 H 0.093 0.907 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.081 0.919 42 H 0.049 0.951 43 H 0.029 0.971 44 H 0.043 0.957 45 H 0.256 0.744 46 H 0.044 0.956 47 H 0.067 0.933 48 H 0.066 0.934 49 H 0.054 0.946 50 H 0.067 0.933 51 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.448 15.711 14.457 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 N -0.087 5.087 4 O 0.031 5.969 5 C -0.027 4.027 6 C -0.140 4.140 7 C -0.285 4.285 8 C 0.401 3.599 9 O -0.437 6.437 10 N -0.330 5.330 11 C 0.052 3.948 12 H 0.119 0.881 13 C -0.180 4.180 14 H 0.109 0.891 15 C -0.117 4.117 16 C -0.161 4.161 17 C -0.006 4.006 18 N -0.327 5.327 19 C -0.356 4.356 20 H 0.099 0.901 21 C -0.231 4.231 22 N -0.611 5.611 23 Si 0.769 3.231 24 H -0.203 1.203 25 H -0.250 1.250 26 H -0.190 1.190 27 C 0.025 3.975 28 H 0.076 0.924 29 C -0.065 4.065 30 C -0.188 4.188 31 C -0.175 4.175 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.133 0.867 36 H 0.132 0.868 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.100 0.900 42 H 0.068 0.932 43 H 0.047 0.953 44 H 0.061 0.939 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.086 0.914 48 H 0.085 0.915 49 H 0.073 0.927 50 H 0.086 0.914 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 3.174 16.494 15.023 22.535 hybrid contribution 0.506 -0.765 -1.596 1.841 sum 3.680 15.729 13.426 21.005 Atomic orbital electron populations 1.20364 0.83601 1.05106 1.04657 1.25177 0.99683 0.86167 0.99876 1.73608 0.89560 1.23963 1.21604 1.84511 1.21252 1.23099 1.68065 1.25208 0.98235 0.83261 0.96013 1.20731 0.87797 0.99263 1.06239 1.21856 0.93815 0.94663 1.18200 1.16801 0.75749 0.83841 0.83479 1.90809 1.51791 1.68840 1.32286 1.45573 1.68920 1.10146 1.08317 1.21237 0.95841 0.79577 0.98139 0.88123 1.23281 0.95419 0.99735 0.99530 0.89147 1.21007 0.93510 0.99090 0.98081 1.21803 0.99776 0.99922 0.94603 1.21689 0.83442 0.98503 0.97009 1.44638 1.00431 1.41076 1.46564 1.19204 1.02375 1.20443 0.93607 0.90116 1.26029 1.00721 0.99027 0.97295 1.69905 1.45736 1.30238 1.15206 0.86036 0.80730 0.80514 0.75773 1.20337 1.24994 1.18968 1.22083 0.95125 0.91632 0.88620 0.92369 1.21882 0.93982 0.96711 0.93973 1.21645 0.99016 0.97789 1.00395 1.21665 1.00326 0.93696 1.01800 0.88923 0.88717 0.89092 0.86730 0.86846 0.88804 0.75198 0.91352 0.91553 0.90047 0.93198 0.95293 0.93864 0.93472 0.93728 0.91365 0.91506 0.92711 0.91385 0.92951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.24 10.49 71.24 0.75 -0.49 16 2 C 0.05 1.13 7.59 45.16 0.34 1.47 16 3 N -0.38 -8.69 12.01 -44.78 -0.54 -9.23 16 4 O 0.09 1.85 11.06 77.05 0.85 2.70 16 5 C 0.04 0.66 7.55 25.48 0.19 0.85 16 6 C -0.08 -0.89 10.33 71.24 0.74 -0.15 16 7 C -0.28 -5.95 6.24 -18.74 -0.12 -6.07 16 8 C 0.62 14.73 7.60 86.66 0.66 15.38 16 9 O -0.56 -17.34 16.70 -4.03 -0.07 -17.40 16 10 N -0.68 -14.77 4.11 -458.03 -1.88 -16.66 16 11 C 0.16 4.03 3.98 42.47 0.17 4.20 16 12 H 0.10 2.73 7.45 -2.39 -0.02 2.71 16 13 C -0.16 -4.56 3.00 -14.17 -0.04 -4.60 16 14 H 0.09 2.97 5.87 -2.39 -0.01 2.96 16 15 C -0.08 -2.01 5.91 30.38 0.18 -1.83 16 16 C -0.12 -3.61 5.90 30.80 0.18 -3.43 16 17 C 0.12 4.51 4.27 85.58 0.37 4.87 16 18 N -0.60 -25.55 2.64 -686.32 -1.81 -27.36 16 19 C -0.23 -11.84 9.80 84.03 0.82 -11.02 16 20 H 0.08 4.48 4.86 -2.91 -0.01 4.46 16 21 C -0.04 -2.07 5.38 84.86 0.46 -1.61 16 22 N -0.96 -59.14 13.97 21.65 0.30 -58.84 16 23 Si 0.94 45.42 24.45 68.60 1.68 47.09 16 24 H -0.28 -12.71 6.40 99.48 0.64 -12.07 16 25 H -0.32 -16.17 7.11 99.48 0.71 -15.46 16 26 H -0.26 -12.18 6.82 99.48 0.68 -11.50 16 27 C 0.13 4.36 2.90 42.87 0.12 4.49 16 28 H 0.06 1.82 6.49 -2.39 -0.02 1.80 16 29 C -0.06 -1.86 1.39 -55.19 -0.08 -1.94 16 30 C -0.13 -3.37 9.22 71.98 0.66 -2.71 16 31 C -0.12 -3.77 8.14 71.98 0.59 -3.18 16 32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 33 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.11 0.73 8.14 -2.38 -0.02 0.71 16 37 H 0.09 1.12 8.11 -2.39 -0.02 1.10 16 38 H 0.41 8.03 6.34 -92.70 -0.59 7.44 16 39 H 0.07 1.53 7.91 -2.39 -0.02 1.51 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.03 1.08 7.13 -2.39 -0.02 1.06 16 44 H 0.04 1.89 4.95 -2.39 -0.01 1.88 16 45 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 46 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 47 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.07 1.43 6.46 -2.39 -0.02 1.41 16 49 H 0.05 1.84 5.89 -2.39 -0.01 1.82 16 50 H 0.07 1.80 8.14 -2.39 -0.02 1.79 16 51 H 0.05 2.04 5.61 -2.39 -0.01 2.02 16 Total: -1.00 -69.66 389.94 4.80 -64.86 By element: Atomic # 1 Polarization: 20.33 SS G_CDS: 0.28 Total: 20.61 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: 5.99 Total: -5.77 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -3.93 Total: -112.09 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: 0.78 Total: -14.70 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 1.68 Total: 47.09 kcal Total: -69.66 4.80 -64.86 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087272121.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.539 kcal (2) G-P(sol) polarization free energy of solvation -69.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds