Wall clock time and date at job start Wed Apr 1 2020 05:28:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29937 * 125.37695 * 2 1 4 4 C 1.36068 * 108.47846 * 180.11617 * 3 2 1 5 5 C 1.47420 * 126.45177 * 179.85951 * 4 3 2 6 6 O 1.21612 * 120.00328 * 179.68414 * 5 4 3 7 7 N 1.34780 * 119.99950 * 359.68330 * 5 4 3 8 8 C 1.46493 * 120.00306 * 179.97438 * 7 5 4 9 9 H 1.08999 * 112.86732 * 26.76970 * 8 7 5 10 10 C 1.54150 * 113.64350 * 255.49884 * 8 7 5 11 11 H 1.09008 * 114.73834 * 104.21454 * 10 8 7 12 12 C 1.53068 * 111.68525 * 333.51238 * 10 8 7 13 13 C 1.53020 * 109.40979 * 213.59236 * 12 10 8 14 14 C 1.52948 * 108.92921 * 64.64410 * 13 12 10 15 15 N 1.45094 * 110.23634 * 303.46822 * 14 13 12 16 16 C 1.36932 * 117.90257 * 218.18539 * 15 14 13 17 17 H 1.08000 * 120.00026 * 152.53574 * 16 15 14 18 18 C 1.38817 * 119.99924 * 332.53249 * 16 15 14 19 19 N 1.31614 * 119.99873 * 344.18677 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 164.18151 * 18 16 15 21 21 H 1.48502 * 109.47198 * 60.00218 * 20 18 16 22 22 H 1.48498 * 109.47230 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47194 * 300.00308 * 20 18 16 24 24 C 1.45096 * 123.60788 * 37.55179 * 15 14 13 25 25 H 1.09008 * 112.25116 * 204.83850 * 24 15 14 26 26 C 1.53394 * 113.74298 * 75.20671 * 24 15 14 27 27 C 1.52998 * 113.68449 * 331.26188 * 26 24 15 28 28 C 1.52997 * 113.68686 * 102.39734 * 26 24 15 29 29 C 1.36086 * 107.10262 * 359.59287 * 4 3 2 30 30 C 1.50702 * 126.52839 * 180.27613 * 29 4 3 31 31 O 1.34047 * 125.38306 * 179.65558 * 2 1 3 32 32 H 1.08996 * 109.47070 * 180.31574 * 1 2 3 33 33 H 1.08996 * 109.47330 * 300.31682 * 1 2 3 34 34 H 1.08994 * 109.46756 * 60.31494 * 1 2 3 35 35 H 0.97007 * 119.99725 * 0.02562 * 7 5 4 36 36 H 1.08995 * 109.48270 * 333.57597 * 12 10 8 37 37 H 1.09000 * 109.48281 * 93.60037 * 12 10 8 38 38 H 1.08997 * 109.56280 * 184.48262 * 13 12 10 39 39 H 1.09000 * 109.56525 * 304.81504 * 13 12 10 40 40 H 1.09001 * 109.39823 * 62.78461 * 14 13 12 41 41 H 1.09000 * 109.40295 * 182.61142 * 14 13 12 42 42 H 0.96999 * 119.99696 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46780 * 91.62464 * 27 26 24 44 44 H 1.08998 * 109.46938 * 211.61802 * 27 26 24 45 45 H 1.08999 * 109.47201 * 331.62012 * 27 26 24 46 46 H 1.09004 * 109.47156 * 60.00454 * 28 26 24 47 47 H 1.08996 * 109.47282 * 179.97438 * 28 26 24 48 48 H 1.09002 * 109.47561 * 300.00091 * 28 26 24 49 49 H 1.08997 * 109.47116 * 90.00238 * 30 29 4 50 50 H 1.09002 * 109.47163 * 210.00285 * 30 29 4 51 51 H 1.08999 * 109.46845 * 330.00084 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0026 5 6 4.7439 1.5439 -0.0064 6 8 5.8605 1.0620 -0.0027 7 7 4.5878 2.8826 -0.0141 8 6 5.7631 3.7571 -0.0173 9 1 6.6388 3.2881 -0.4659 10 6 6.0461 4.4175 1.3465 11 1 6.8776 3.9816 1.9006 12 6 4.7709 4.5607 2.1810 13 6 4.8535 5.8371 3.0209 14 6 4.8801 7.0463 2.0846 15 7 5.9845 6.9334 1.1504 16 6 6.6668 8.0748 0.8238 17 1 7.7027 8.0175 0.5237 18 6 6.0270 9.3055 0.8783 19 7 4.7133 9.3623 0.9349 20 14 7.0306 10.8810 0.8717 21 1 7.8354 10.9500 -0.3744 22 1 6.1172 12.0500 0.9370 23 1 7.9371 10.8954 2.0478 24 6 6.4098 5.6792 0.5575 25 1 7.4562 5.7007 0.2527 26 6 5.4777 5.1722 -0.5503 27 6 4.0225 5.6120 -0.3780 28 6 6.0122 5.4164 -1.9629 29 6 3.5661 -0.6969 0.0050 30 6 4.7803 -1.5895 0.0114 31 8 2.2832 -1.0929 0.0066 32 1 -0.3633 -1.0276 0.0057 33 1 -0.3634 0.5187 0.8871 34 1 -0.3632 0.5089 -0.8928 35 1 3.6972 3.2670 -0.0167 36 1 3.9073 4.6167 1.5185 37 1 4.6686 3.6981 2.8395 38 1 3.9837 5.9008 3.6746 39 1 5.7630 5.8207 3.6215 40 1 3.9494 7.0865 1.5187 41 1 4.9857 7.9577 2.6731 42 1 4.2663 10.2223 0.9733 43 1 3.8608 6.5495 -0.9102 44 1 3.3611 4.8458 -0.7827 45 1 3.8087 5.7539 0.6813 46 1 6.9674 4.9054 -2.0834 47 1 5.2999 5.0311 -2.6925 48 1 6.1502 6.4863 -2.1193 49 1 5.0718 -1.7990 1.0405 50 1 4.5464 -2.5247 -0.4975 51 1 5.6007 -1.0906 -0.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087309666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:27 Heat of formation + Delta-G solvation = 41.666082 kcal Electronic energy + Delta-G solvation = -32561.325666 eV Core-core repulsion = 28464.285662 eV Total energy + Delta-G solvation = -4097.040003 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.60725 -40.90155 -38.76682 -35.23732 -35.06758 -33.24084 -33.01085 -32.78577 -30.39692 -30.18236 -29.89744 -26.89017 -26.68154 -25.42065 -24.63417 -23.26047 -22.36121 -21.74128 -20.80027 -20.03449 -19.32546 -18.08988 -17.23930 -17.21259 -16.85751 -15.92742 -15.66421 -14.98552 -14.79467 -14.60264 -14.38950 -14.31486 -13.82993 -13.66983 -13.63118 -13.26623 -13.14534 -12.99454 -12.96514 -12.61808 -12.54298 -12.46508 -12.23538 -11.90403 -11.54977 -11.40975 -11.35407 -11.09121 -10.99019 -10.91883 -10.79153 -10.66770 -10.34842 -10.24003 -10.08661 -9.92857 -9.68298 -9.51924 -9.32730 -9.08172 -8.95802 -8.48098 -8.31479 -6.59173 -5.74234 -3.18864 0.95590 1.88219 2.27235 3.27608 3.35031 3.39810 3.45530 3.47335 3.73990 4.41933 4.51922 4.73659 4.80623 5.04361 5.04715 5.11475 5.12220 5.16564 5.26386 5.33485 5.37344 5.41286 5.53212 5.66783 5.67665 5.74617 5.82765 5.89889 5.93110 6.02164 6.08127 6.18986 6.24413 6.27097 6.34530 6.46046 6.52479 6.62119 6.63922 6.71781 6.78519 6.83554 6.88782 7.05140 7.11983 7.27440 7.31488 7.46550 7.78112 7.79607 7.87172 8.33521 8.50206 9.29833 9.95462 10.37425 11.31088 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002863 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.879572 B = 9777.123050 C =10182.277655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.189 3.811 3 N -0.457 5.457 4 C -0.070 4.070 5 C 0.598 3.402 6 O -0.543 6.543 7 N -0.688 5.688 8 C 0.124 3.876 9 H 0.108 0.892 10 C -0.130 4.130 11 H 0.072 0.928 12 C -0.103 4.103 13 C -0.145 4.145 14 C 0.180 3.820 15 N -0.568 5.568 16 C -0.262 4.262 17 H 0.064 0.936 18 C 0.009 3.991 19 N -0.900 5.900 20 Si 0.899 3.101 21 H -0.284 1.284 22 H -0.292 1.292 23 H -0.285 1.285 24 C 0.190 3.810 25 H 0.076 0.924 26 C -0.110 4.110 27 C -0.137 4.137 28 C -0.126 4.126 29 C 0.034 3.966 30 C -0.074 4.074 31 O -0.200 6.200 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.409 0.591 36 H 0.075 0.925 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.052 0.948 40 H 0.039 0.961 41 H 0.065 0.935 42 H 0.253 0.747 43 H 0.065 0.935 44 H 0.029 0.971 45 H 0.093 0.907 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.065 0.935 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 -19.740 -1.592 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.020 4.020 3 N -0.187 5.187 4 C -0.190 4.190 5 C 0.384 3.616 6 O -0.422 6.422 7 N -0.338 5.338 8 C 0.019 3.981 9 H 0.126 0.874 10 C -0.151 4.151 11 H 0.090 0.910 12 C -0.140 4.140 13 C -0.184 4.184 14 C 0.055 3.945 15 N -0.285 5.285 16 C -0.392 4.392 17 H 0.081 0.919 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.730 3.270 21 H -0.210 1.210 22 H -0.218 1.218 23 H -0.212 1.212 24 C 0.079 3.921 25 H 0.094 0.906 26 C -0.114 4.114 27 C -0.194 4.194 28 C -0.183 4.183 29 C -0.023 4.023 30 C -0.131 4.131 31 O -0.087 6.087 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.084 0.916 49 H 0.109 0.891 50 H 0.096 0.904 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.825 -19.268 -1.562 20.501 hybrid contribution 0.191 0.360 -0.066 0.413 sum -6.635 -18.908 -1.628 20.105 Atomic orbital electron populations 1.20287 0.80876 1.04745 1.05399 1.26212 0.96473 0.78270 1.01010 1.70743 1.00801 1.29924 1.17259 1.21631 0.92263 0.92341 1.12814 1.16753 0.85963 0.82295 0.76628 1.90748 1.24218 1.75359 1.51852 1.45916 1.11236 1.04691 1.71978 1.22924 0.88180 0.88936 0.98046 0.87440 1.23238 0.98275 0.98332 0.95268 0.90992 1.21492 0.97255 0.97247 0.98033 1.22086 1.00297 0.97243 0.98776 1.20500 0.90769 0.93686 0.89548 1.42968 1.36084 1.02126 1.47359 1.19188 0.93202 0.84732 1.42088 0.91860 1.24977 0.95201 0.97988 1.00858 1.70054 1.06405 1.24040 1.53925 0.86424 0.79318 0.83245 0.78055 1.20992 1.21763 1.21164 1.21046 0.95722 0.85112 0.90240 0.90612 1.23004 0.98670 0.92615 0.97122 1.22002 0.92833 0.99927 1.04617 1.21615 0.99157 1.02168 0.95364 1.23711 0.83773 0.94594 1.00177 1.20579 0.90307 0.97537 1.04634 1.84313 1.16445 1.38018 1.69971 0.89354 0.88252 0.88292 0.75272 0.90652 0.93994 0.93040 0.92911 0.94351 0.91632 0.93724 0.91595 0.95210 0.88841 0.93581 0.94191 0.91646 0.89110 0.90353 0.86849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.01 0.38 0.06 16 2 C 0.19 2.04 8.30 -13.08 -0.11 1.93 16 3 N -0.46 -6.23 11.06 -7.66 -0.08 -6.31 16 4 C -0.07 -1.02 6.99 -83.02 -0.58 -1.60 16 5 C 0.60 9.64 7.81 -12.52 -0.10 9.54 16 6 O -0.54 -9.51 14.44 5.27 0.08 -9.43 16 7 N -0.69 -10.94 4.32 -53.87 -0.23 -11.18 16 8 C 0.12 2.09 3.58 -66.89 -0.24 1.85 16 9 H 0.11 1.85 7.37 -51.93 -0.38 1.46 16 10 C -0.13 -2.34 4.29 -89.88 -0.39 -2.72 16 11 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 12 C -0.10 -1.81 4.65 -26.69 -0.12 -1.93 16 13 C -0.15 -2.77 6.04 -26.75 -0.16 -2.93 16 14 C 0.18 4.13 3.97 -4.82 -0.02 4.11 16 15 N -0.57 -13.37 2.59 -167.47 -0.43 -13.81 16 16 C -0.26 -6.89 9.44 -15.06 -0.14 -7.04 16 17 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 18 C 0.01 0.23 4.84 -17.43 -0.08 0.15 16 19 N -0.90 -24.94 11.03 55.49 0.61 -24.32 16 20 Si 0.90 21.38 29.58 -169.99 -5.03 16.35 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 24 C 0.19 3.83 3.57 -68.39 -0.24 3.59 16 25 H 0.08 1.55 7.96 -51.92 -0.41 1.13 16 26 C -0.11 -2.00 1.34 -153.85 -0.21 -2.20 16 27 C -0.14 -2.58 6.82 37.16 0.25 -2.32 16 28 C -0.13 -2.19 9.16 37.16 0.34 -1.85 16 29 C 0.03 0.41 7.44 -35.08 -0.26 0.15 16 30 C -0.07 -0.69 9.88 36.01 0.36 -0.34 16 31 O -0.20 -2.26 10.73 6.51 0.07 -2.19 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.41 6.41 5.42 -40.82 -0.22 6.19 16 36 H 0.08 1.32 3.70 -51.93 -0.19 1.13 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.04 0.94 5.56 -51.93 -0.29 0.65 16 41 H 0.07 1.70 6.62 -51.93 -0.34 1.35 16 42 H 0.25 6.89 8.31 -40.82 -0.34 6.55 16 43 H 0.07 1.41 8.08 -51.93 -0.42 0.99 16 44 H 0.03 0.49 6.49 -51.93 -0.34 0.15 16 45 H 0.09 1.84 1.99 -51.93 -0.10 1.74 16 46 H 0.05 0.73 7.95 -51.93 -0.41 0.32 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 49 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 50 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 51 H 0.11 1.21 6.48 -51.93 -0.34 0.87 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -30.23 387.04 -8.17 -38.39 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -7.65 Total: 8.20 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -1.33 Total: -1.54 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.14 Total: -55.62 kcal Atomic # 8 Polarization: -11.76 SS G_CDS: 0.15 Total: -11.62 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.23 -8.17 -38.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.059 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds