Wall clock time and date at job start Wed Apr 1 2020 05:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29937 * 125.37695 * 2 1 4 4 C 1.36068 * 108.47846 * 180.11617 * 3 2 1 5 5 C 1.47420 * 126.45177 * 179.85951 * 4 3 2 6 6 O 1.21612 * 120.00328 * 179.68414 * 5 4 3 7 7 N 1.34780 * 119.99950 * 359.68330 * 5 4 3 8 8 C 1.46493 * 120.00306 * 179.97438 * 7 5 4 9 9 H 1.08999 * 112.86732 * 26.76970 * 8 7 5 10 10 C 1.54150 * 113.64350 * 255.49884 * 8 7 5 11 11 H 1.09008 * 114.73834 * 104.21454 * 10 8 7 12 12 C 1.53068 * 111.68525 * 333.51238 * 10 8 7 13 13 C 1.53020 * 109.40979 * 213.59236 * 12 10 8 14 14 C 1.52948 * 108.92921 * 64.64410 * 13 12 10 15 15 N 1.45094 * 110.23634 * 303.46822 * 14 13 12 16 16 C 1.36932 * 117.90257 * 218.18539 * 15 14 13 17 17 H 1.08000 * 120.00026 * 152.53574 * 16 15 14 18 18 C 1.38817 * 119.99924 * 332.53249 * 16 15 14 19 19 N 1.31614 * 119.99873 * 344.18677 * 18 16 15 20 20 Si 1.86801 * 119.99910 * 164.18151 * 18 16 15 21 21 H 1.48502 * 109.47198 * 60.00218 * 20 18 16 22 22 H 1.48498 * 109.47230 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47194 * 300.00308 * 20 18 16 24 24 C 1.45096 * 123.60788 * 37.55179 * 15 14 13 25 25 H 1.09008 * 112.25116 * 204.83850 * 24 15 14 26 26 C 1.53394 * 113.74298 * 75.20671 * 24 15 14 27 27 C 1.52998 * 113.68449 * 331.26188 * 26 24 15 28 28 C 1.52997 * 113.68686 * 102.39734 * 26 24 15 29 29 C 1.36086 * 107.10262 * 359.59287 * 4 3 2 30 30 C 1.50702 * 126.52839 * 180.27613 * 29 4 3 31 31 O 1.34047 * 125.38306 * 179.65558 * 2 1 3 32 32 H 1.08996 * 109.47070 * 180.31574 * 1 2 3 33 33 H 1.08996 * 109.47330 * 300.31682 * 1 2 3 34 34 H 1.08994 * 109.46756 * 60.31494 * 1 2 3 35 35 H 0.97007 * 119.99725 * 0.02562 * 7 5 4 36 36 H 1.08995 * 109.48270 * 333.57597 * 12 10 8 37 37 H 1.09000 * 109.48281 * 93.60037 * 12 10 8 38 38 H 1.08997 * 109.56280 * 184.48262 * 13 12 10 39 39 H 1.09000 * 109.56525 * 304.81504 * 13 12 10 40 40 H 1.09001 * 109.39823 * 62.78461 * 14 13 12 41 41 H 1.09000 * 109.40295 * 182.61142 * 14 13 12 42 42 H 0.96999 * 119.99696 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46780 * 91.62464 * 27 26 24 44 44 H 1.08998 * 109.46938 * 211.61802 * 27 26 24 45 45 H 1.08999 * 109.47201 * 331.62012 * 27 26 24 46 46 H 1.09004 * 109.47156 * 60.00454 * 28 26 24 47 47 H 1.08996 * 109.47282 * 179.97438 * 28 26 24 48 48 H 1.09002 * 109.47561 * 300.00091 * 28 26 24 49 49 H 1.08997 * 109.47116 * 90.00238 * 30 29 4 50 50 H 1.09002 * 109.47163 * 210.00285 * 30 29 4 51 51 H 1.08999 * 109.46845 * 330.00084 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0026 5 6 4.7439 1.5439 -0.0064 6 8 5.8605 1.0620 -0.0027 7 7 4.5878 2.8826 -0.0141 8 6 5.7631 3.7571 -0.0173 9 1 6.6388 3.2881 -0.4659 10 6 6.0461 4.4175 1.3465 11 1 6.8776 3.9816 1.9006 12 6 4.7709 4.5607 2.1810 13 6 4.8535 5.8371 3.0209 14 6 4.8801 7.0463 2.0846 15 7 5.9845 6.9334 1.1504 16 6 6.6668 8.0748 0.8238 17 1 7.7027 8.0175 0.5237 18 6 6.0270 9.3055 0.8783 19 7 4.7133 9.3623 0.9349 20 14 7.0306 10.8810 0.8717 21 1 7.8354 10.9500 -0.3744 22 1 6.1172 12.0500 0.9370 23 1 7.9371 10.8954 2.0478 24 6 6.4098 5.6792 0.5575 25 1 7.4562 5.7007 0.2527 26 6 5.4777 5.1722 -0.5503 27 6 4.0225 5.6120 -0.3780 28 6 6.0122 5.4164 -1.9629 29 6 3.5661 -0.6969 0.0050 30 6 4.7803 -1.5895 0.0114 31 8 2.2832 -1.0929 0.0066 32 1 -0.3633 -1.0276 0.0057 33 1 -0.3634 0.5187 0.8871 34 1 -0.3632 0.5089 -0.8928 35 1 3.6972 3.2670 -0.0167 36 1 3.9073 4.6167 1.5185 37 1 4.6686 3.6981 2.8395 38 1 3.9837 5.9008 3.6746 39 1 5.7630 5.8207 3.6215 40 1 3.9494 7.0865 1.5187 41 1 4.9857 7.9577 2.6731 42 1 4.2663 10.2223 0.9733 43 1 3.8608 6.5495 -0.9102 44 1 3.3611 4.8458 -0.7827 45 1 3.8087 5.7539 0.6813 46 1 6.9674 4.9054 -2.0834 47 1 5.2999 5.0311 -2.6925 48 1 6.1502 6.4863 -2.1193 49 1 5.0718 -1.7990 1.0405 50 1 4.5464 -2.5247 -0.4975 51 1 5.6007 -1.0906 -0.5044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087309666.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:26 Heat of formation + Delta-G solvation = 22.480610 kcal Electronic energy + Delta-G solvation = -32562.157610 eV Core-core repulsion = 28464.285662 eV Total energy + Delta-G solvation = -4097.871948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.48763 -42.40057 -40.06600 -36.93444 -36.00257 -34.51160 -34.37616 -34.03155 -32.13167 -31.46449 -30.92956 -28.37930 -27.73716 -27.18518 -26.02885 -24.48749 -23.88309 -22.93330 -21.98350 -21.32635 -20.82494 -19.35821 -18.72255 -18.63175 -18.10965 -17.15871 -16.86382 -16.57457 -16.40422 -16.02353 -15.70850 -15.32814 -15.17558 -14.92286 -14.79960 -14.52767 -14.29232 -14.22130 -14.02844 -13.78819 -13.57221 -13.51222 -13.47884 -13.17764 -13.11059 -12.92762 -12.84594 -12.79163 -12.51672 -12.45695 -12.30323 -12.11298 -11.98350 -11.84988 -11.57034 -11.48839 -11.19413 -11.09931 -10.97499 -10.70253 -10.31336 -9.99317 -9.69320 -8.52231 -7.77458 -5.23882 0.01749 0.95136 1.45998 1.47898 1.49868 1.55573 2.10851 2.20361 2.55507 2.91046 3.33723 3.53157 3.57960 3.63564 3.71742 3.82182 3.90784 4.02874 4.15503 4.24996 4.34299 4.40707 4.48332 4.56801 4.59307 4.65449 4.67498 4.67520 4.67809 4.79652 4.81031 4.84908 4.91728 4.92760 5.02987 5.09168 5.09906 5.12281 5.15644 5.24377 5.28232 5.32664 5.39095 5.53309 5.57119 5.60211 5.70049 5.75188 5.98800 6.33440 6.46509 6.61120 7.09911 7.27689 8.05497 8.39307 9.24355 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019926 B = 0.002863 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.879572 B = 9777.123050 C =10182.277655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.198 3.802 3 N -0.488 5.488 4 C -0.104 4.104 5 C 0.599 3.401 6 O -0.561 6.561 7 N -0.687 5.687 8 C 0.144 3.856 9 H 0.110 0.890 10 C -0.125 4.125 11 H 0.077 0.923 12 C -0.095 4.095 13 C -0.135 4.135 14 C 0.191 3.809 15 N -0.578 5.578 16 C -0.268 4.268 17 H 0.060 0.940 18 C -0.038 4.038 19 N -0.924 5.924 20 Si 0.956 3.044 21 H -0.280 1.280 22 H -0.296 1.296 23 H -0.283 1.283 24 C 0.173 3.827 25 H 0.071 0.929 26 C -0.107 4.107 27 C -0.127 4.127 28 C -0.121 4.121 29 C 0.041 3.959 30 C -0.073 4.073 31 O -0.197 6.197 32 H 0.113 0.887 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.411 0.589 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.070 0.930 39 H 0.049 0.951 40 H 0.020 0.980 41 H 0.029 0.971 42 H 0.247 0.753 43 H 0.032 0.968 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.039 0.961 49 H 0.102 0.898 50 H 0.105 0.895 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.013 -22.433 -1.595 23.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.012 4.012 3 N -0.218 5.218 4 C -0.223 4.223 5 C 0.386 3.614 6 O -0.441 6.441 7 N -0.336 5.336 8 C 0.038 3.962 9 H 0.128 0.872 10 C -0.146 4.146 11 H 0.095 0.905 12 C -0.132 4.132 13 C -0.174 4.174 14 C 0.066 3.934 15 N -0.297 5.297 16 C -0.399 4.399 17 H 0.077 0.923 18 C -0.235 4.235 19 N -0.569 5.569 20 Si 0.785 3.215 21 H -0.206 1.206 22 H -0.222 1.222 23 H -0.210 1.210 24 C 0.064 3.936 25 H 0.089 0.911 26 C -0.111 4.111 27 C -0.183 4.183 28 C -0.178 4.178 29 C -0.016 4.016 30 C -0.129 4.129 31 O -0.085 6.085 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.249 0.751 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.089 0.911 39 H 0.068 0.932 40 H 0.038 0.962 41 H 0.047 0.953 42 H 0.056 0.944 43 H 0.051 0.949 44 H 0.071 0.929 45 H 0.104 0.896 46 H 0.080 0.920 47 H 0.072 0.928 48 H 0.058 0.942 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -7.583 -21.985 -1.572 23.310 hybrid contribution 0.392 1.115 -0.079 1.184 sum -7.191 -20.871 -1.651 22.136 Atomic orbital electron populations 1.20606 0.77461 1.06780 1.06437 1.27231 0.97973 0.77477 0.98473 1.70715 1.00723 1.31268 1.19107 1.21474 0.92220 0.92997 1.15581 1.16963 0.86400 0.82219 0.75854 1.90733 1.25109 1.75618 1.52639 1.45804 1.10759 1.04755 1.72327 1.22592 0.88642 0.88207 0.96724 0.87219 1.23199 0.98657 0.96863 0.95873 0.90485 1.21417 0.97009 0.96803 0.97957 1.21953 1.01033 0.96150 0.98259 1.20239 0.89805 0.93943 0.89435 1.43088 1.35987 1.02562 1.48057 1.19436 0.93286 0.85998 1.41190 0.92254 1.25585 0.96030 1.00393 1.01461 1.70195 1.07488 1.23961 1.55289 0.85528 0.77934 0.80055 0.77978 1.20576 1.22193 1.20969 1.21257 0.95870 0.84663 0.91811 0.91102 1.22867 0.97730 0.93513 0.96950 1.21860 0.93787 0.98982 1.03686 1.21558 1.00392 1.00701 0.95181 1.24147 0.84779 0.94307 0.98333 1.20674 0.88694 0.98025 1.05522 1.84357 1.16099 1.38157 1.69906 0.86849 0.87122 0.87088 0.75089 0.90502 0.92330 0.91146 0.93198 0.96183 0.95280 0.94400 0.94866 0.92942 0.89646 0.91982 0.92848 0.94188 0.87926 0.87589 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.20 3.78 8.30 88.39 0.73 4.52 16 3 N -0.49 -12.47 11.06 -293.04 -3.24 -15.71 16 4 C -0.10 -2.86 6.99 40.41 0.28 -2.57 16 5 C 0.60 18.52 7.81 86.66 0.68 19.20 16 6 O -0.56 -18.94 14.44 -4.07 -0.06 -19.00 16 7 N -0.69 -20.89 4.32 -442.58 -1.91 -22.80 16 8 C 0.14 4.67 3.58 45.67 0.16 4.83 16 9 H 0.11 3.60 7.37 -2.39 -0.02 3.58 16 10 C -0.12 -4.35 4.29 -10.31 -0.04 -4.40 16 11 H 0.08 2.63 8.14 -2.38 -0.02 2.61 16 12 C -0.09 -3.19 4.65 30.62 0.14 -3.05 16 13 C -0.14 -5.08 6.04 30.58 0.18 -4.90 16 14 C 0.19 8.98 3.97 86.63 0.34 9.32 16 15 N -0.58 -27.85 2.59 -683.77 -1.77 -29.63 16 16 C -0.27 -14.47 9.44 84.04 0.79 -13.68 16 17 H 0.06 3.18 7.85 -2.91 -0.02 3.16 16 18 C -0.04 -2.11 4.84 84.86 0.41 -1.70 16 19 N -0.92 -52.95 11.03 21.65 0.24 -52.72 16 20 Si 0.96 44.93 29.58 68.60 2.03 46.96 16 21 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 22 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 23 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 24 C 0.17 7.03 3.57 45.45 0.16 7.19 16 25 H 0.07 2.91 7.96 -2.38 -0.02 2.90 16 26 C -0.11 -3.85 1.34 -51.75 -0.07 -3.92 16 27 C -0.13 -4.77 6.82 71.98 0.49 -4.28 16 28 C -0.12 -4.17 9.16 71.98 0.66 -3.51 16 29 C 0.04 0.93 7.44 25.19 0.19 1.12 16 30 C -0.07 -1.20 9.88 71.24 0.70 -0.50 16 31 O -0.20 -3.95 10.73 0.38 0.00 -3.94 16 32 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.11 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.41 12.30 5.42 -92.70 -0.50 11.80 16 36 H 0.08 2.60 3.70 -2.39 -0.01 2.59 16 37 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.02 1.03 5.56 -2.39 -0.01 1.02 16 41 H 0.03 1.55 6.62 -2.39 -0.02 1.54 16 42 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 43 H 0.03 1.45 8.08 -2.38 -0.02 1.43 16 44 H 0.05 1.70 6.49 -2.39 -0.02 1.68 16 45 H 0.09 3.38 1.99 -2.39 0.00 3.38 16 46 H 0.06 1.91 7.95 -2.38 -0.02 1.89 16 47 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 49 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 51 H 0.10 1.97 6.48 -2.39 -0.02 1.96 16 Total: -1.00 -66.85 387.04 2.32 -64.53 By element: Atomic # 1 Polarization: 27.88 SS G_CDS: 0.46 Total: 28.34 kcal Atomic # 6 Polarization: -2.61 SS G_CDS: 6.57 Total: 3.97 kcal Atomic # 7 Polarization: -114.17 SS G_CDS: -6.69 Total: -120.85 kcal Atomic # 8 Polarization: -22.89 SS G_CDS: -0.05 Total: -22.94 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -66.85 2.32 -64.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309666.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.007 kcal (2) G-P(sol) polarization free energy of solvation -66.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.527 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds