Wall clock time and date at job start Wed Apr 1 2020 05:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29934 * 125.37242 * 2 1 4 4 C 1.36068 * 108.47689 * 180.16825 * 3 2 1 5 5 C 1.47418 * 126.45095 * 179.82734 * 4 3 2 6 6 O 1.21615 * 120.00311 * 179.69087 * 5 4 3 7 7 N 1.34782 * 120.00075 * 359.68746 * 5 4 3 8 8 C 1.46498 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.08991 * 113.34873 * 28.42485 * 8 7 5 10 10 C 1.50008 * 114.12474 * 255.49344 * 8 7 5 11 11 H 1.08998 * 111.89869 * 170.18104 * 10 8 7 12 12 C 1.51209 * 126.15963 * 27.75540 * 10 8 7 13 13 C 1.54089 * 106.19743 * 198.59387 * 12 10 8 14 14 C 1.52493 * 112.59845 * 55.48778 * 13 12 10 15 15 N 1.48354 * 111.89651 * 313.05947 * 14 13 12 16 16 C 1.36939 * 123.24765 * 231.93808 * 15 14 13 17 17 H 1.08004 * 120.00258 * 146.79671 * 16 15 14 18 18 C 1.38812 * 119.99853 * 326.79462 * 16 15 14 19 19 N 1.31625 * 119.99891 * 165.54740 * 18 16 15 20 20 Si 1.86797 * 119.99925 * 345.54363 * 18 16 15 21 21 H 1.48493 * 109.47275 * 85.33958 * 20 18 16 22 22 H 1.48506 * 109.47162 * 205.34007 * 20 18 16 23 23 H 1.48500 * 109.47244 * 325.33569 * 20 18 16 24 24 C 1.45377 * 113.58492 * 51.99113 * 15 14 13 25 25 H 1.09002 * 111.69513 * 59.47275 * 24 15 14 26 26 C 1.49957 * 126.68416 * 203.97051 * 24 15 14 27 27 C 1.53006 * 114.08455 * 253.27818 * 26 24 15 28 28 C 1.52999 * 114.08758 * 25.52825 * 26 24 15 29 29 C 1.36092 * 107.10103 * 359.56608 * 4 3 2 30 30 C 1.50699 * 126.52607 * 180.24661 * 29 4 3 31 31 O 1.34045 * 125.38677 * 179.68433 * 2 1 3 32 32 H 1.09006 * 109.46515 * 180.29697 * 1 2 3 33 33 H 1.08998 * 109.47441 * 300.28848 * 1 2 3 34 34 H 1.09000 * 109.47692 * 60.30062 * 1 2 3 35 35 H 0.97001 * 119.99388 * 0.02562 * 7 5 4 36 36 H 1.08998 * 110.09606 * 79.42408 * 12 10 8 37 37 H 1.08991 * 110.19674 * 317.81854 * 12 10 8 38 38 H 1.08995 * 108.84244 * 176.26401 * 13 12 10 39 39 H 1.09006 * 108.84405 * 294.71957 * 13 12 10 40 40 H 1.09006 * 109.00118 * 73.77803 * 14 13 12 41 41 H 1.08999 * 109.00885 * 192.54619 * 14 13 12 42 42 H 0.96996 * 119.99498 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47147 * 60.00154 * 27 26 24 44 44 H 1.09003 * 109.47033 * 180.02562 * 27 26 24 45 45 H 1.09003 * 109.46847 * 299.99858 * 27 26 24 46 46 H 1.08996 * 109.46981 * 48.59722 * 28 26 24 47 47 H 1.09002 * 109.47358 * 168.59755 * 28 26 24 48 48 H 1.09005 * 109.47029 * 288.60120 * 28 26 24 49 49 H 1.08994 * 109.47367 * 89.99338 * 30 29 4 50 50 H 1.08996 * 109.47073 * 209.99764 * 30 29 4 51 51 H 1.09000 * 109.46925 * 329.99009 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6640 -0.0038 5 6 4.7438 1.5441 -0.0087 6 8 5.8604 1.0622 -0.0061 7 7 4.5876 2.8828 -0.0161 8 6 5.7629 3.7573 -0.0216 9 1 6.6346 3.3065 -0.4958 10 6 6.0507 4.4059 1.3001 11 1 7.0187 4.9068 1.3049 12 6 5.6936 3.8534 2.6616 13 6 5.7517 5.0444 3.6375 14 6 4.8585 6.2017 3.2036 15 7 5.0300 6.5240 1.7657 16 6 5.2929 7.7867 1.3056 17 1 5.9089 7.9247 0.4292 18 6 4.7677 8.8892 1.9654 19 7 5.2363 10.0928 1.7117 20 14 3.3960 8.6648 3.2133 21 1 3.9809 8.3379 4.5385 22 1 2.6094 9.9203 3.3155 23 1 2.5069 7.5579 2.7780 24 6 4.8911 5.3715 0.8907 25 1 3.9102 4.9064 0.9895 26 6 5.4693 5.2156 -0.4841 27 6 4.4386 5.3179 -1.6103 28 6 6.7209 6.0592 -0.7345 29 6 3.5660 -0.6968 0.0037 30 6 4.7802 -1.5894 0.0083 31 8 2.2832 -1.0928 0.0060 32 1 -0.3632 -1.0277 0.0053 33 1 -0.3634 0.5183 0.8873 34 1 -0.3634 0.5091 -0.8926 35 1 3.6970 3.2671 -0.0179 36 1 6.4145 3.0912 2.9573 37 1 4.6888 3.4316 2.6448 38 1 5.4357 4.7066 4.6244 39 1 6.7808 5.3984 3.7000 40 1 3.8176 5.9347 3.3871 41 1 5.1068 7.0829 3.7951 42 1 4.8690 10.8633 2.1726 43 1 3.9564 6.2947 -1.5739 44 1 4.9373 5.1940 -2.5716 45 1 3.6878 4.5372 -1.4876 46 1 7.4208 5.9245 0.0902 47 1 7.1915 5.7437 -1.6656 48 1 6.4421 7.1106 -0.8062 49 1 5.0734 -1.7988 1.0370 50 1 4.5457 -2.5245 -0.5002 51 1 5.5999 -1.0904 -0.5087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087309667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:30 Heat of formation + Delta-G solvation = 59.786216 kcal Electronic energy + Delta-G solvation = -32631.326529 eV Core-core repulsion = 28535.072274 eV Total energy + Delta-G solvation = -4096.254255 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.65730 -41.26748 -38.82741 -35.56360 -35.12731 -33.37763 -33.26237 -32.82018 -30.80151 -30.35879 -29.47135 -27.23994 -26.67930 -25.84226 -24.82885 -23.38404 -22.36322 -21.78336 -20.74409 -20.48350 -19.43970 -18.22884 -17.83009 -17.28592 -16.78886 -15.97663 -15.56075 -15.20062 -14.81865 -14.51634 -14.50356 -14.14886 -13.92623 -13.80630 -13.76470 -13.56610 -13.30338 -13.05106 -13.02719 -12.98208 -12.74798 -12.58486 -12.46915 -12.35619 -11.64358 -11.54114 -11.43017 -11.40095 -11.22591 -11.14320 -10.96784 -10.61354 -10.44985 -10.41417 -10.12424 -9.97471 -9.75936 -9.71234 -9.45751 -9.03041 -8.97498 -8.67298 -8.39535 -6.70768 -5.91434 -3.34180 0.90548 1.82827 2.22729 3.11254 3.27212 3.33373 3.48728 3.52169 3.67144 4.37063 4.55245 4.61329 4.64521 4.77234 4.79944 5.02080 5.04664 5.07667 5.13069 5.21233 5.22838 5.36819 5.39934 5.51668 5.58239 5.63476 5.71469 5.78015 5.81101 5.82617 5.94086 5.95399 6.04280 6.09583 6.13881 6.29373 6.38158 6.43085 6.44953 6.50221 6.55615 6.62132 6.67387 6.77267 6.81600 6.89274 6.93102 7.15658 7.24958 7.65477 8.00060 8.23394 8.44723 8.95195 9.74540 10.24988 11.24029 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.003386 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.547790 B = 8266.590077 C = 8790.974136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.191 3.809 3 N -0.457 5.457 4 C -0.071 4.071 5 C 0.605 3.395 6 O -0.537 6.537 7 N -0.684 5.684 8 C 0.138 3.862 9 H 0.099 0.901 10 C -0.170 4.170 11 H 0.106 0.894 12 C -0.084 4.084 13 C -0.129 4.129 14 C 0.125 3.875 15 N -0.588 5.588 16 C -0.255 4.255 17 H 0.099 0.901 18 C 0.026 3.974 19 N -0.913 5.913 20 Si 0.885 3.115 21 H -0.287 1.287 22 H -0.305 1.305 23 H -0.273 1.273 24 C 0.150 3.850 25 H 0.049 0.951 26 C -0.061 4.061 27 C -0.136 4.136 28 C -0.123 4.123 29 C 0.036 3.964 30 C -0.075 4.075 31 O -0.199 6.199 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.409 0.591 36 H 0.047 0.953 37 H 0.050 0.950 38 H 0.051 0.949 39 H 0.059 0.941 40 H 0.019 0.981 41 H 0.070 0.930 42 H 0.262 0.738 43 H 0.066 0.934 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 -22.291 -4.297 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.018 4.018 3 N -0.188 5.188 4 C -0.191 4.191 5 C 0.390 3.610 6 O -0.415 6.415 7 N -0.334 5.334 8 C 0.033 3.967 9 H 0.117 0.883 10 C -0.191 4.191 11 H 0.124 0.876 12 C -0.122 4.122 13 C -0.168 4.168 14 C 0.000 4.000 15 N -0.311 5.311 16 C -0.382 4.382 17 H 0.116 0.884 18 C -0.173 4.173 19 N -0.556 5.556 20 Si 0.716 3.284 21 H -0.215 1.215 22 H -0.233 1.233 23 H -0.199 1.199 24 C 0.043 3.957 25 H 0.066 0.934 26 C -0.062 4.062 27 C -0.193 4.193 28 C -0.180 4.180 29 C -0.020 4.020 30 C -0.131 4.131 31 O -0.087 6.087 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.247 0.753 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.078 0.922 40 H 0.037 0.963 41 H 0.088 0.912 42 H 0.072 0.928 43 H 0.085 0.915 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.083 0.917 47 H 0.062 0.938 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.131 -21.743 -4.259 22.742 hybrid contribution -1.245 -0.403 0.994 1.643 sum -6.376 -22.146 -3.265 23.275 Atomic orbital electron populations 1.20297 0.80850 1.04783 1.05427 1.26209 0.96475 0.78229 1.00890 1.70747 1.00771 1.29948 1.17311 1.21542 0.92174 0.92290 1.13116 1.16627 0.86037 0.81864 0.76465 1.90763 1.24172 1.75227 1.51349 1.45521 1.10434 1.04782 1.72659 1.21548 0.87765 0.89505 0.97882 0.88318 1.23360 1.02567 1.00232 0.92958 0.87619 1.20986 0.99966 0.96537 0.94677 1.21906 1.01282 0.96275 0.97386 1.21372 0.95938 0.96433 0.86214 1.44160 1.83116 1.04790 0.98986 1.19127 1.25505 0.79918 1.13694 0.88357 1.25472 0.98017 0.95136 0.98668 1.69774 1.43069 0.98296 1.44487 0.86928 0.84004 0.76079 0.81377 1.21507 1.23336 1.19869 1.21738 0.93893 0.88861 0.91241 0.93405 1.21846 0.97240 0.92572 0.94567 1.21693 0.98120 1.02128 0.97404 1.21785 0.94860 1.00981 1.00343 1.23709 0.83815 0.94543 0.99954 1.20588 0.90257 0.97575 1.04695 1.84317 1.16418 1.38018 1.69920 0.89314 0.88247 0.88255 0.75318 0.93380 0.93090 0.93039 0.92181 0.96282 0.91179 0.92840 0.91460 0.92958 0.93315 0.91708 0.93820 0.89591 0.89052 0.90292 0.86832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.32 10.51 36.00 0.38 0.06 16 2 C 0.19 2.01 8.30 -13.08 -0.11 1.91 16 3 N -0.46 -6.09 11.06 -7.66 -0.08 -6.17 16 4 C -0.07 -0.99 6.99 -83.02 -0.58 -1.57 16 5 C 0.60 9.28 7.81 -12.52 -0.10 9.18 16 6 O -0.54 -8.98 14.48 5.26 0.08 -8.91 16 7 N -0.68 -10.34 4.25 -58.74 -0.25 -10.59 16 8 C 0.14 2.20 3.90 -71.82 -0.28 1.92 16 9 H 0.10 1.59 7.61 -51.93 -0.39 1.19 16 10 C -0.17 -2.97 3.00 -95.83 -0.29 -3.26 16 11 H 0.11 1.96 5.85 -51.93 -0.30 1.65 16 12 C -0.08 -1.44 5.93 -27.06 -0.16 -1.60 16 13 C -0.13 -2.35 5.90 -26.42 -0.16 -2.51 16 14 C 0.13 2.73 4.22 -3.28 -0.01 2.72 16 15 N -0.59 -13.53 2.61 -169.46 -0.44 -13.97 16 16 C -0.25 -6.78 9.77 -15.06 -0.15 -6.93 16 17 H 0.10 2.71 4.86 -52.48 -0.25 2.45 16 18 C 0.03 0.74 5.36 -17.43 -0.09 0.64 16 19 N -0.91 -27.55 13.97 55.49 0.78 -26.77 16 20 Si 0.89 22.52 24.43 -169.99 -4.15 18.36 16 21 H -0.29 -7.09 6.43 56.52 0.36 -6.73 16 22 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 23 H -0.27 -6.91 6.81 56.52 0.38 -6.53 16 24 C 0.15 2.91 2.92 -72.13 -0.21 2.70 16 25 H 0.05 0.95 6.60 -51.93 -0.34 0.61 16 26 C -0.06 -1.03 1.38 -159.15 -0.22 -1.25 16 27 C -0.14 -2.10 9.21 37.16 0.34 -1.76 16 28 C -0.12 -2.10 8.13 37.16 0.30 -1.80 16 29 C 0.04 0.43 7.44 -35.08 -0.26 0.17 16 30 C -0.07 -0.66 9.88 36.00 0.36 -0.31 16 31 O -0.20 -2.18 10.73 6.54 0.07 -2.11 16 32 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.41 6.15 5.95 -40.82 -0.24 5.91 16 36 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.05 0.88 7.98 -51.93 -0.41 0.47 16 38 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.02 0.42 7.06 -51.93 -0.37 0.06 16 41 H 0.07 1.66 4.96 -51.93 -0.26 1.40 16 42 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 43 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 46 H 0.06 1.15 5.89 -51.93 -0.31 0.84 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 1.70 5.62 -51.93 -0.29 1.41 16 49 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 51 H 0.11 1.14 6.48 -51.93 -0.34 0.81 16 LS Contribution 385.60 15.07 5.81 5.81 Total: -1.00 -32.24 385.60 -7.12 -39.35 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -7.68 Total: 6.68 kcal Atomic # 6 Polarization: -0.44 SS G_CDS: -1.24 Total: -1.68 kcal Atomic # 7 Polarization: -57.50 SS G_CDS: 0.00 Total: -57.50 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.15 Total: -11.02 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.15 Total: 18.36 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -32.24 -7.12 -39.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.139 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds