Wall clock time and date at job start Wed Apr 1 2020 05:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.29934 * 125.37242 * 2 1 4 4 C 1.36068 * 108.47689 * 180.16825 * 3 2 1 5 5 C 1.47418 * 126.45095 * 179.82734 * 4 3 2 6 6 O 1.21615 * 120.00311 * 179.69087 * 5 4 3 7 7 N 1.34782 * 120.00075 * 359.68746 * 5 4 3 8 8 C 1.46498 * 119.99903 * 180.02562 * 7 5 4 9 9 H 1.08991 * 113.34873 * 28.42485 * 8 7 5 10 10 C 1.50008 * 114.12474 * 255.49344 * 8 7 5 11 11 H 1.08998 * 111.89869 * 170.18104 * 10 8 7 12 12 C 1.51209 * 126.15963 * 27.75540 * 10 8 7 13 13 C 1.54089 * 106.19743 * 198.59387 * 12 10 8 14 14 C 1.52493 * 112.59845 * 55.48778 * 13 12 10 15 15 N 1.48354 * 111.89651 * 313.05947 * 14 13 12 16 16 C 1.36939 * 123.24765 * 231.93808 * 15 14 13 17 17 H 1.08004 * 120.00258 * 146.79671 * 16 15 14 18 18 C 1.38812 * 119.99853 * 326.79462 * 16 15 14 19 19 N 1.31625 * 119.99891 * 165.54740 * 18 16 15 20 20 Si 1.86797 * 119.99925 * 345.54363 * 18 16 15 21 21 H 1.48493 * 109.47275 * 85.33958 * 20 18 16 22 22 H 1.48506 * 109.47162 * 205.34007 * 20 18 16 23 23 H 1.48500 * 109.47244 * 325.33569 * 20 18 16 24 24 C 1.45377 * 113.58492 * 51.99113 * 15 14 13 25 25 H 1.09002 * 111.69513 * 59.47275 * 24 15 14 26 26 C 1.49957 * 126.68416 * 203.97051 * 24 15 14 27 27 C 1.53006 * 114.08455 * 253.27818 * 26 24 15 28 28 C 1.52999 * 114.08758 * 25.52825 * 26 24 15 29 29 C 1.36092 * 107.10103 * 359.56608 * 4 3 2 30 30 C 1.50699 * 126.52607 * 180.24661 * 29 4 3 31 31 O 1.34045 * 125.38677 * 179.68433 * 2 1 3 32 32 H 1.09006 * 109.46515 * 180.29697 * 1 2 3 33 33 H 1.08998 * 109.47441 * 300.28848 * 1 2 3 34 34 H 1.09000 * 109.47692 * 60.30062 * 1 2 3 35 35 H 0.97001 * 119.99388 * 0.02562 * 7 5 4 36 36 H 1.08998 * 110.09606 * 79.42408 * 12 10 8 37 37 H 1.08991 * 110.19674 * 317.81854 * 12 10 8 38 38 H 1.08995 * 108.84244 * 176.26401 * 13 12 10 39 39 H 1.09006 * 108.84405 * 294.71957 * 13 12 10 40 40 H 1.09006 * 109.00118 * 73.77803 * 14 13 12 41 41 H 1.08999 * 109.00885 * 192.54619 * 14 13 12 42 42 H 0.96996 * 119.99498 * 179.97438 * 19 18 16 43 43 H 1.09000 * 109.47147 * 60.00154 * 27 26 24 44 44 H 1.09003 * 109.47033 * 180.02562 * 27 26 24 45 45 H 1.09003 * 109.46847 * 299.99858 * 27 26 24 46 46 H 1.08996 * 109.46981 * 48.59722 * 28 26 24 47 47 H 1.09002 * 109.47358 * 168.59755 * 28 26 24 48 48 H 1.09005 * 109.47029 * 288.60120 * 28 26 24 49 49 H 1.08994 * 109.47367 * 89.99338 * 30 29 4 50 50 H 1.08996 * 109.47073 * 209.99764 * 30 29 4 51 51 H 1.09000 * 109.46925 * 329.99009 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2592 1.0595 0.0000 4 6 3.5611 0.6640 -0.0038 5 6 4.7438 1.5441 -0.0087 6 8 5.8604 1.0622 -0.0061 7 7 4.5876 2.8828 -0.0161 8 6 5.7629 3.7573 -0.0216 9 1 6.6346 3.3065 -0.4958 10 6 6.0507 4.4059 1.3001 11 1 7.0187 4.9068 1.3049 12 6 5.6936 3.8534 2.6616 13 6 5.7517 5.0444 3.6375 14 6 4.8585 6.2017 3.2036 15 7 5.0300 6.5240 1.7657 16 6 5.2929 7.7867 1.3056 17 1 5.9089 7.9247 0.4292 18 6 4.7677 8.8892 1.9654 19 7 5.2363 10.0928 1.7117 20 14 3.3960 8.6648 3.2133 21 1 3.9809 8.3379 4.5385 22 1 2.6094 9.9203 3.3155 23 1 2.5069 7.5579 2.7780 24 6 4.8911 5.3715 0.8907 25 1 3.9102 4.9064 0.9895 26 6 5.4693 5.2156 -0.4841 27 6 4.4386 5.3179 -1.6103 28 6 6.7209 6.0592 -0.7345 29 6 3.5660 -0.6968 0.0037 30 6 4.7802 -1.5894 0.0083 31 8 2.2832 -1.0928 0.0060 32 1 -0.3632 -1.0277 0.0053 33 1 -0.3634 0.5183 0.8873 34 1 -0.3634 0.5091 -0.8926 35 1 3.6970 3.2671 -0.0179 36 1 6.4145 3.0912 2.9573 37 1 4.6888 3.4316 2.6448 38 1 5.4357 4.7066 4.6244 39 1 6.7808 5.3984 3.7000 40 1 3.8176 5.9347 3.3871 41 1 5.1068 7.0829 3.7951 42 1 4.8690 10.8633 2.1726 43 1 3.9564 6.2947 -1.5739 44 1 4.9373 5.1940 -2.5716 45 1 3.6878 4.5372 -1.4876 46 1 7.4208 5.9245 0.0902 47 1 7.1915 5.7437 -1.6656 48 1 6.4421 7.1106 -0.8062 49 1 5.0734 -1.7988 1.0370 50 1 4.5457 -2.5245 -0.5002 51 1 5.5999 -1.0904 -0.5087 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087309667.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:29 Heat of formation + Delta-G solvation = 37.299194 kcal Electronic energy + Delta-G solvation = -32632.301640 eV Core-core repulsion = 28535.072274 eV Total energy + Delta-G solvation = -4097.229366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.50837 -42.68737 -40.05896 -37.18203 -36.02282 -34.90541 -34.36436 -34.04683 -32.68911 -31.00891 -30.86265 -28.58881 -27.86083 -27.36234 -26.30857 -24.38244 -23.95062 -22.81990 -22.28433 -21.52650 -20.84290 -19.64605 -18.95986 -18.69985 -18.12377 -17.09275 -16.92571 -16.80131 -16.16075 -15.81115 -15.62921 -15.49605 -15.25813 -15.15554 -14.85642 -14.75381 -14.46258 -14.30483 -14.22791 -14.12840 -13.95433 -13.57488 -13.49982 -13.34337 -13.19113 -13.15369 -12.91790 -12.81087 -12.69911 -12.38344 -12.26790 -12.01081 -11.98451 -11.87043 -11.67282 -11.50456 -11.35482 -11.23101 -11.18391 -10.69571 -10.30166 -10.09134 -9.74537 -8.60283 -8.09226 -5.47001 0.00263 0.92868 1.28449 1.38886 1.44008 1.46964 1.98547 2.18039 2.45128 2.87824 3.04338 3.17557 3.39385 3.56604 3.61213 3.67486 3.82515 3.99905 4.07489 4.14608 4.26856 4.33105 4.34911 4.40810 4.50784 4.57469 4.58611 4.63693 4.65077 4.65852 4.79006 4.81205 4.84709 4.90671 4.93179 4.98652 5.02273 5.07303 5.11404 5.13326 5.16638 5.20150 5.22372 5.30916 5.40164 5.44622 5.48063 5.71164 5.96743 6.27797 6.36118 6.56343 6.94486 7.05974 7.66231 8.22716 9.09737 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014063 B = 0.003386 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1990.547790 B = 8266.590077 C = 8790.974136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.198 3.802 3 N -0.489 5.489 4 C -0.104 4.104 5 C 0.606 3.394 6 O -0.554 6.554 7 N -0.682 5.682 8 C 0.157 3.843 9 H 0.104 0.896 10 C -0.159 4.159 11 H 0.096 0.904 12 C -0.077 4.077 13 C -0.122 4.122 14 C 0.121 3.879 15 N -0.600 5.600 16 C -0.231 4.231 17 H 0.084 0.916 18 C -0.032 4.032 19 N -0.960 5.960 20 Si 0.937 3.063 21 H -0.277 1.277 22 H -0.315 1.315 23 H -0.271 1.271 24 C 0.134 3.866 25 H 0.049 0.951 26 C -0.061 4.061 27 C -0.131 4.131 28 C -0.116 4.116 29 C 0.043 3.957 30 C -0.073 4.073 31 O -0.197 6.197 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.410 0.590 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.056 0.944 40 H 0.019 0.981 41 H 0.048 0.952 42 H 0.258 0.742 43 H 0.047 0.953 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.055 0.945 47 H 0.071 0.929 48 H 0.054 0.946 49 H 0.102 0.898 50 H 0.106 0.894 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.697 -25.855 -4.282 27.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.011 4.011 3 N -0.219 5.219 4 C -0.222 4.222 5 C 0.393 3.607 6 O -0.434 6.434 7 N -0.332 5.332 8 C 0.052 3.948 9 H 0.122 0.878 10 C -0.180 4.180 11 H 0.114 0.886 12 C -0.115 4.115 13 C -0.161 4.161 14 C -0.003 4.003 15 N -0.324 5.324 16 C -0.360 4.360 17 H 0.101 0.899 18 C -0.226 4.226 19 N -0.607 5.607 20 Si 0.768 3.232 21 H -0.204 1.204 22 H -0.244 1.244 23 H -0.196 1.196 24 C 0.028 3.972 25 H 0.067 0.933 26 C -0.063 4.063 27 C -0.188 4.188 28 C -0.173 4.173 29 C -0.014 4.014 30 C -0.130 4.130 31 O -0.085 6.085 32 H 0.132 0.868 33 H 0.127 0.873 34 H 0.130 0.870 35 H 0.248 0.752 36 H 0.081 0.919 37 H 0.069 0.931 38 H 0.095 0.905 39 H 0.075 0.925 40 H 0.037 0.963 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.089 0.911 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.090 0.910 48 H 0.073 0.927 49 H 0.121 0.879 50 H 0.124 0.876 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -6.164 -25.357 -4.236 26.437 hybrid contribution -0.936 0.581 0.927 1.440 sum -7.100 -24.776 -3.309 25.985 Atomic orbital electron populations 1.20601 0.77582 1.06781 1.06371 1.27189 0.97932 0.77492 0.98516 1.70721 1.00814 1.31285 1.19123 1.21426 0.92120 0.92956 1.15725 1.16814 0.86395 0.81783 0.75720 1.90747 1.24985 1.75471 1.52167 1.45454 1.10026 1.04823 1.72911 1.21280 0.88267 0.88880 0.96421 0.87799 1.23292 1.01021 0.99594 0.94094 0.88595 1.20931 1.00378 0.96264 0.93925 1.21812 1.00164 0.95249 0.98876 1.21411 0.96742 0.97014 0.85171 1.44289 1.83245 1.04438 1.00403 1.19232 1.23209 0.81417 1.12180 0.89861 1.26006 1.00355 0.95061 1.01208 1.69893 1.45006 0.99021 1.46800 0.86067 0.81647 0.75307 0.80216 1.20357 1.24432 1.19603 1.22007 0.94743 0.87660 0.92825 0.93321 1.21869 0.97202 0.93272 0.93911 1.21641 0.98005 1.01362 0.97798 1.21663 0.95001 0.99138 1.01489 1.24162 0.84771 0.94296 0.98149 1.20686 0.88668 0.98055 1.05543 1.84359 1.16138 1.38136 1.69861 0.86820 0.87339 0.87024 0.75240 0.91851 0.93062 0.90511 0.92489 0.96277 0.93372 0.93320 0.93427 0.91079 0.92210 0.92570 0.91023 0.92689 0.87943 0.87584 0.88078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.46 10.51 71.24 0.75 0.29 16 2 C 0.20 3.71 8.30 88.39 0.73 4.44 16 3 N -0.49 -12.22 11.06 -293.05 -3.24 -15.46 16 4 C -0.10 -2.73 6.99 40.41 0.28 -2.45 16 5 C 0.61 17.71 7.81 86.66 0.68 18.38 16 6 O -0.55 -17.69 14.48 -4.08 -0.06 -17.75 16 7 N -0.68 -19.60 4.25 -457.99 -1.95 -21.55 16 8 C 0.16 4.76 3.90 42.47 0.17 4.92 16 9 H 0.10 3.12 7.61 -2.39 -0.02 3.10 16 10 C -0.16 -5.34 3.00 -14.17 -0.04 -5.38 16 11 H 0.10 3.46 5.85 -2.39 -0.01 3.45 16 12 C -0.08 -2.48 5.93 30.38 0.18 -2.30 16 13 C -0.12 -4.21 5.90 30.79 0.18 -4.03 16 14 C 0.12 5.18 4.22 85.85 0.36 5.54 16 15 N -0.60 -27.67 2.61 -690.04 -1.80 -29.47 16 16 C -0.23 -12.60 9.77 84.03 0.82 -11.78 16 17 H 0.08 4.77 4.86 -2.91 -0.01 4.75 16 18 C -0.03 -1.86 5.36 84.86 0.46 -1.40 16 19 N -0.96 -60.03 13.97 21.65 0.30 -59.73 16 20 Si 0.94 47.44 24.43 68.60 1.68 49.11 16 21 H -0.28 -13.35 6.43 99.48 0.64 -12.71 16 22 H -0.32 -16.34 7.11 99.48 0.71 -15.63 16 23 H -0.27 -13.39 6.81 99.48 0.68 -12.71 16 24 C 0.13 5.10 2.92 42.87 0.13 5.23 16 25 H 0.05 1.89 6.60 -2.39 -0.02 1.87 16 26 C -0.06 -2.02 1.38 -55.19 -0.08 -2.09 16 27 C -0.13 -3.90 9.21 71.98 0.66 -3.24 16 28 C -0.12 -3.95 8.13 71.98 0.59 -3.36 16 29 C 0.04 0.93 7.44 25.19 0.19 1.12 16 30 C -0.07 -1.13 9.88 71.24 0.70 -0.42 16 31 O -0.20 -3.83 10.73 0.50 0.01 -3.82 16 32 H 0.11 0.37 8.14 -2.38 -0.02 0.35 16 33 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.41 11.79 5.95 -92.71 -0.55 11.24 16 36 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 38 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.06 2.00 8.14 -2.38 -0.02 1.98 16 40 H 0.02 0.82 7.06 -2.38 -0.02 0.81 16 41 H 0.05 2.26 4.96 -2.39 -0.01 2.25 16 42 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 43 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.06 1.63 6.32 -2.39 -0.02 1.62 16 46 H 0.06 1.99 5.89 -2.39 -0.01 1.97 16 47 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 48 H 0.05 2.23 5.62 -2.38 -0.01 2.22 16 49 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 50 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.10 1.87 6.48 -2.39 -0.02 1.85 16 Total: -1.00 -71.11 385.60 2.01 -69.10 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.32 Total: 26.08 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: 6.75 Total: 3.48 kcal Atomic # 7 Polarization: -119.52 SS G_CDS: -6.68 Total: -126.21 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.05 Total: -21.57 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 1.68 Total: 49.11 kcal Total: -71.11 2.01 -69.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309667.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.397 kcal (2) G-P(sol) polarization free energy of solvation -71.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds