Wall clock time and date at job start Wed Apr 1 2020 05:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29945 * 125.37732 * 2 1 4 4 C 1.36069 * 108.47347 * 180.18524 * 3 2 1 5 5 C 1.47422 * 126.44219 * 179.85512 * 4 3 2 6 6 O 1.21616 * 119.99225 * 179.68378 * 5 4 3 7 7 N 1.34772 * 120.00260 * 359.69271 * 5 4 3 8 8 C 1.46503 * 120.00003 * 179.97438 * 7 5 4 9 9 H 1.09004 * 113.22427 * 22.19367 * 8 7 5 10 10 C 1.49996 * 114.12667 * 249.13908 * 8 7 5 11 11 H 1.08997 * 112.50764 * 322.39857 * 10 8 7 12 12 C 1.51209 * 126.17399 * 104.78678 * 10 8 7 13 13 C 1.54090 * 106.19735 * 161.42958 * 12 10 8 14 14 C 1.52927 * 112.61269 * 304.41312 * 13 12 10 15 15 N 1.48401 * 111.62889 * 47.05020 * 14 13 12 16 16 C 1.36939 * 123.16808 * 128.13222 * 15 14 13 17 17 H 1.08008 * 119.99698 * 313.86657 * 16 15 14 18 18 C 1.38809 * 120.00680 * 133.86835 * 16 15 14 19 19 N 1.31617 * 119.99779 * 338.99095 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 158.99003 * 18 16 15 21 21 H 1.48495 * 109.47611 * 60.00126 * 20 18 16 22 22 H 1.48508 * 109.47088 * 299.99919 * 20 18 16 23 23 H 1.48505 * 109.47171 * 180.02562 * 20 18 16 24 24 C 1.45382 * 113.66849 * 307.85702 * 15 14 13 25 25 H 1.09001 * 112.09200 * 301.41762 * 24 15 14 26 26 C 1.49963 * 126.67270 * 156.20385 * 24 15 14 27 27 C 1.53006 * 114.08370 * 334.31322 * 26 24 15 28 28 C 1.53001 * 114.08909 * 106.73387 * 26 24 15 29 29 C 1.36085 * 107.10277 * 359.59333 * 4 3 2 30 30 C 1.50705 * 126.52196 * 180.27200 * 29 4 3 31 31 O 1.34048 * 125.38334 * 179.73970 * 2 1 3 32 32 H 1.09002 * 109.46973 * 180.27815 * 1 2 3 33 33 H 1.08993 * 109.47349 * 300.28462 * 1 2 3 34 34 H 1.09005 * 109.46791 * 60.28289 * 1 2 3 35 35 H 0.97000 * 119.99746 * 359.97438 * 7 5 4 36 36 H 1.09002 * 110.09856 * 280.60404 * 12 10 8 37 37 H 1.09003 * 110.09574 * 42.14308 * 12 10 8 38 38 H 1.09001 * 108.84117 * 65.38556 * 13 12 10 39 39 H 1.08994 * 108.84316 * 183.85037 * 13 12 10 40 40 H 1.09000 * 109.16547 * 286.47529 * 14 13 12 41 41 H 1.09005 * 109.07553 * 167.56423 * 14 13 12 42 42 H 0.97000 * 120.00362 * 354.53948 * 19 18 16 43 43 H 1.08997 * 109.47027 * 54.59057 * 27 26 24 44 44 H 1.09000 * 109.46902 * 174.58973 * 27 26 24 45 45 H 1.09001 * 109.46946 * 294.59446 * 27 26 24 46 46 H 1.08997 * 109.46568 * 59.99996 * 28 26 24 47 47 H 1.08998 * 109.47480 * 179.97438 * 28 26 24 48 48 H 1.09000 * 109.47123 * 300.00725 * 28 26 24 49 49 H 1.09008 * 109.46624 * 90.00566 * 30 29 4 50 50 H 1.08999 * 109.47550 * 209.99919 * 30 29 4 51 51 H 1.08999 * 109.47354 * 330.00764 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0042 5 6 4.7439 1.5440 -0.0086 6 8 5.8604 1.0619 -0.0063 7 7 4.5878 2.8826 -0.0151 8 6 5.7631 3.7571 -0.0190 9 1 6.6617 3.2678 -0.3948 10 6 5.9636 4.5204 1.2566 11 1 5.0232 4.8522 1.6965 12 6 6.9964 4.2245 2.3207 13 6 7.1279 5.5094 3.1610 14 6 7.4716 6.7344 2.3125 15 7 6.6116 6.8229 1.1063 16 6 5.9118 7.9498 0.7661 17 1 5.3412 8.4779 1.5158 18 6 5.9357 8.4134 -0.5420 19 7 6.9124 8.0565 -1.3489 20 14 4.5818 9.5437 -1.1573 21 1 4.5604 10.7822 -0.3382 22 1 3.2716 8.8535 -1.0452 23 1 4.8364 9.8935 -2.5779 24 6 6.5870 5.6027 0.3162 25 1 7.5817 5.3141 -0.0234 26 6 5.5050 5.1680 -0.6268 27 6 4.1253 5.7446 -0.3025 28 6 5.8794 5.2891 -2.1053 29 6 3.5659 -0.6969 0.0025 30 6 4.7802 -1.5896 0.0069 31 8 2.2832 -1.0929 0.0050 32 1 -0.3633 -1.0277 0.0050 33 1 -0.3634 0.5182 0.8873 34 1 -0.3633 0.5095 -0.8926 35 1 3.6972 3.2670 -0.0172 36 1 6.6614 3.3989 2.9486 37 1 7.9518 3.9784 1.8573 38 1 6.1858 5.6895 3.6787 39 1 7.9145 5.3665 3.9019 40 1 8.5144 6.6729 2.0012 41 1 7.3344 7.6336 2.9130 42 1 7.6564 7.5352 -1.0089 43 1 4.1893 6.8314 -0.2482 44 1 3.4202 5.4607 -1.0837 45 1 3.7837 5.3525 0.6554 46 1 6.7522 4.6694 -2.3109 47 1 5.0439 4.9547 -2.7203 48 1 6.1092 6.3289 -2.3380 49 1 5.0728 -1.7998 1.0358 50 1 4.5459 -2.5244 -0.5023 51 1 5.6001 -1.0902 -0.5092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087309668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:33 Heat of formation + Delta-G solvation = 40.967393 kcal Electronic energy + Delta-G solvation = -32660.806495 eV Core-core repulsion = 28563.736194 eV Total energy + Delta-G solvation = -4097.070301 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -43.58401 -40.85006 -38.76182 -35.27752 -35.04463 -33.52582 -33.20916 -32.80395 -30.31736 -30.07896 -29.19723 -26.88368 -26.73861 -25.37581 -24.50121 -23.24189 -22.28140 -21.55790 -20.52338 -20.05178 -19.30697 -18.59295 -17.68118 -17.21529 -16.78832 -15.84069 -15.63633 -14.81303 -14.48507 -14.37297 -14.21806 -14.06017 -13.79902 -13.72473 -13.61663 -13.47703 -13.19846 -12.98157 -12.96293 -12.77310 -12.51922 -12.47507 -12.43797 -11.77027 -11.60234 -11.38627 -11.36610 -11.07749 -10.89973 -10.88018 -10.79185 -10.57562 -10.21963 -10.08717 -10.07801 -9.96658 -9.83725 -9.61886 -9.37062 -8.93752 -8.69959 -8.41337 -8.18253 -6.68392 -5.97983 -3.40664 0.98334 1.90924 2.29339 3.31894 3.39426 3.44772 3.46260 3.63983 3.76512 4.44566 4.51666 4.76955 4.82426 4.90654 5.05035 5.12639 5.15011 5.18349 5.26777 5.29231 5.31976 5.41427 5.51789 5.66413 5.69974 5.75078 5.85868 5.90362 5.96336 6.05767 6.11521 6.21073 6.22000 6.29808 6.43502 6.52399 6.54568 6.61248 6.69027 6.73188 6.80424 6.83205 6.85910 6.94982 7.14974 7.19425 7.33217 7.43282 7.49116 7.85688 8.15758 8.38898 8.62862 9.10130 9.79653 10.44511 11.17361 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003406 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.803260 B = 8219.586783 C = 9184.112801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.188 3.812 3 N -0.457 5.457 4 C -0.069 4.069 5 C 0.598 3.402 6 O -0.543 6.543 7 N -0.689 5.689 8 C 0.133 3.867 9 H 0.112 0.888 10 C -0.175 4.175 11 H 0.093 0.907 12 C -0.088 4.088 13 C -0.127 4.127 14 C 0.143 3.857 15 N -0.576 5.576 16 C -0.343 4.343 17 H 0.045 0.955 18 C -0.004 4.004 19 N -0.895 5.895 20 Si 1.051 2.949 21 H -0.292 1.292 22 H -0.288 1.288 23 H -0.284 1.284 24 C 0.175 3.825 25 H 0.047 0.953 26 C -0.045 4.045 27 C -0.133 4.133 28 C -0.152 4.152 29 C 0.033 3.967 30 C -0.074 4.074 31 O -0.200 6.200 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.099 0.901 35 H 0.408 0.592 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.049 0.951 40 H 0.014 0.986 41 H 0.053 0.947 42 H 0.271 0.729 43 H 0.102 0.898 44 H 0.035 0.965 45 H 0.046 0.954 46 H 0.038 0.962 47 H 0.035 0.965 48 H 0.108 0.892 49 H 0.090 0.910 50 H 0.078 0.922 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.415 -16.668 2.575 19.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.021 4.021 3 N -0.187 5.187 4 C -0.190 4.190 5 C 0.383 3.617 6 O -0.422 6.422 7 N -0.337 5.337 8 C 0.028 3.972 9 H 0.130 0.870 10 C -0.197 4.197 11 H 0.111 0.889 12 C -0.126 4.126 13 C -0.166 4.166 14 C 0.018 3.982 15 N -0.299 5.299 16 C -0.472 4.472 17 H 0.062 0.938 18 C -0.209 4.209 19 N -0.532 5.532 20 Si 0.880 3.120 21 H -0.219 1.219 22 H -0.215 1.215 23 H -0.209 1.209 24 C 0.067 3.933 25 H 0.064 0.936 26 C -0.046 4.046 27 C -0.190 4.190 28 C -0.209 4.209 29 C -0.023 4.023 30 C -0.130 4.130 31 O -0.088 6.088 32 H 0.106 0.894 33 H 0.117 0.883 34 H 0.117 0.883 35 H 0.244 0.756 36 H 0.061 0.939 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.072 0.928 42 H 0.082 0.918 43 H 0.121 0.879 44 H 0.054 0.946 45 H 0.065 0.935 46 H 0.057 0.943 47 H 0.054 0.946 48 H 0.126 0.874 49 H 0.109 0.891 50 H 0.097 0.903 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.438 -15.489 1.243 18.180 hybrid contribution 0.338 -1.342 1.533 2.065 sum -9.100 -16.830 2.776 19.333 Atomic orbital electron populations 1.20280 0.80897 1.04726 1.05354 1.26209 0.96469 0.78296 1.01110 1.70746 1.00836 1.29922 1.17229 1.21653 0.92250 0.92355 1.12696 1.16745 0.85963 0.82275 0.76687 1.90750 1.24217 1.75296 1.51890 1.45856 1.11110 1.04765 1.71953 1.22639 0.88324 0.88320 0.97882 0.87042 1.23449 1.00283 1.00598 0.95352 0.88910 1.21093 0.98199 0.96307 0.96980 1.21959 1.00447 0.96219 0.97974 1.21128 0.92886 0.95006 0.89207 1.43771 1.52785 1.09485 1.23897 1.19594 1.25865 1.04780 0.96989 0.93780 1.25948 1.00774 0.99101 0.95111 1.70618 1.07796 1.36084 1.38724 0.83785 0.75728 0.76028 0.76446 1.21862 1.21451 1.20902 1.21185 0.94172 0.86281 0.91680 0.93591 1.21635 0.96836 0.91083 0.95094 1.21804 0.92960 1.05526 0.98708 1.22049 0.98951 1.06007 0.93892 1.23711 0.83757 0.94601 1.00225 1.20581 0.90317 0.97537 1.04609 1.84306 1.16452 1.38006 1.69996 0.89359 0.88318 0.88294 0.75636 0.93851 0.92746 0.92975 0.93228 0.96827 0.92806 0.91821 0.87935 0.94559 0.93471 0.94262 0.94586 0.87421 0.89140 0.90347 0.86822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.33 10.51 36.00 0.38 0.05 16 2 C 0.19 2.11 8.30 -13.08 -0.11 2.00 16 3 N -0.46 -6.49 11.06 -7.65 -0.08 -6.57 16 4 C -0.07 -1.05 6.99 -83.02 -0.58 -1.64 16 5 C 0.60 10.27 7.81 -12.52 -0.10 10.17 16 6 O -0.54 -10.12 14.40 5.26 0.08 -10.04 16 7 N -0.69 -11.83 5.30 -58.75 -0.31 -12.14 16 8 C 0.13 2.48 3.49 -71.84 -0.25 2.23 16 9 H 0.11 2.20 7.38 -51.93 -0.38 1.81 16 10 C -0.18 -3.40 2.85 -95.84 -0.27 -3.67 16 11 H 0.09 1.92 5.99 -51.93 -0.31 1.61 16 12 C -0.09 -1.60 6.11 -27.06 -0.17 -1.76 16 13 C -0.13 -2.28 5.92 -26.20 -0.16 -2.44 16 14 C 0.14 3.01 6.50 -3.03 -0.02 2.99 16 15 N -0.58 -13.67 2.47 -169.18 -0.42 -14.09 16 16 C -0.34 -8.91 7.67 -15.06 -0.12 -9.02 16 17 H 0.04 1.19 7.91 -52.48 -0.42 0.78 16 18 C 0.00 -0.11 3.94 -17.43 -0.07 -0.18 16 19 N -0.90 -24.59 10.80 55.49 0.60 -23.99 16 20 Si 1.05 23.85 28.75 -169.99 -4.89 18.96 16 21 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.21 7.10 56.52 0.40 -5.81 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.18 3.83 1.50 -72.15 -0.11 3.72 16 25 H 0.05 1.08 7.97 -51.93 -0.41 0.67 16 26 C -0.05 -0.92 1.06 -159.15 -0.17 -1.09 16 27 C -0.13 -2.69 7.63 37.16 0.28 -2.41 16 28 C -0.15 -3.15 9.25 37.16 0.34 -2.80 16 29 C 0.03 0.43 7.44 -35.08 -0.26 0.17 16 30 C -0.07 -0.74 9.88 36.01 0.36 -0.38 16 31 O -0.20 -2.35 10.73 6.54 0.07 -2.28 16 32 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.41 6.76 7.12 -40.82 -0.29 6.47 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.99 8.04 -51.93 -0.42 0.57 16 38 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.05 1.14 8.01 -51.93 -0.42 0.72 16 42 H 0.27 7.70 7.41 -40.82 -0.30 7.40 16 43 H 0.10 2.35 3.71 -51.93 -0.19 2.16 16 44 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 45 H 0.05 0.90 5.73 -51.93 -0.30 0.60 16 46 H 0.04 0.77 8.04 -51.93 -0.42 0.35 16 47 H 0.04 0.68 8.08 -51.93 -0.42 0.26 16 48 H 0.11 2.56 5.48 -51.93 -0.28 2.28 16 49 H 0.09 0.80 8.14 -51.92 -0.42 0.38 16 50 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 51 H 0.11 1.30 6.48 -51.93 -0.34 0.96 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -29.82 390.33 -8.00 -37.82 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -7.92 Total: 10.52 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -1.01 Total: -4.07 kcal Atomic # 7 Polarization: -56.58 SS G_CDS: -0.21 Total: -56.79 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: 0.15 Total: -12.33 kcal Atomic # 14 Polarization: 23.85 SS G_CDS: -4.89 Total: 18.96 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.82 -8.00 -37.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.790 kcal (2) G-P(sol) polarization free energy of solvation -29.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds