Wall clock time and date at job start Wed Apr 1 2020 05:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29945 * 125.37732 * 2 1 4 4 C 1.36069 * 108.47347 * 180.18524 * 3 2 1 5 5 C 1.47422 * 126.44219 * 179.85512 * 4 3 2 6 6 O 1.21616 * 119.99225 * 179.68378 * 5 4 3 7 7 N 1.34772 * 120.00260 * 359.69271 * 5 4 3 8 8 C 1.46503 * 120.00003 * 179.97438 * 7 5 4 9 9 H 1.09004 * 113.22427 * 22.19367 * 8 7 5 10 10 C 1.49996 * 114.12667 * 249.13908 * 8 7 5 11 11 H 1.08997 * 112.50764 * 322.39857 * 10 8 7 12 12 C 1.51209 * 126.17399 * 104.78678 * 10 8 7 13 13 C 1.54090 * 106.19735 * 161.42958 * 12 10 8 14 14 C 1.52927 * 112.61269 * 304.41312 * 13 12 10 15 15 N 1.48401 * 111.62889 * 47.05020 * 14 13 12 16 16 C 1.36939 * 123.16808 * 128.13222 * 15 14 13 17 17 H 1.08008 * 119.99698 * 313.86657 * 16 15 14 18 18 C 1.38809 * 120.00680 * 133.86835 * 16 15 14 19 19 N 1.31617 * 119.99779 * 338.99095 * 18 16 15 20 20 Si 1.86799 * 120.00110 * 158.99003 * 18 16 15 21 21 H 1.48495 * 109.47611 * 60.00126 * 20 18 16 22 22 H 1.48508 * 109.47088 * 299.99919 * 20 18 16 23 23 H 1.48505 * 109.47171 * 180.02562 * 20 18 16 24 24 C 1.45382 * 113.66849 * 307.85702 * 15 14 13 25 25 H 1.09001 * 112.09200 * 301.41762 * 24 15 14 26 26 C 1.49963 * 126.67270 * 156.20385 * 24 15 14 27 27 C 1.53006 * 114.08370 * 334.31322 * 26 24 15 28 28 C 1.53001 * 114.08909 * 106.73387 * 26 24 15 29 29 C 1.36085 * 107.10277 * 359.59333 * 4 3 2 30 30 C 1.50705 * 126.52196 * 180.27200 * 29 4 3 31 31 O 1.34048 * 125.38334 * 179.73970 * 2 1 3 32 32 H 1.09002 * 109.46973 * 180.27815 * 1 2 3 33 33 H 1.08993 * 109.47349 * 300.28462 * 1 2 3 34 34 H 1.09005 * 109.46791 * 60.28289 * 1 2 3 35 35 H 0.97000 * 119.99746 * 359.97438 * 7 5 4 36 36 H 1.09002 * 110.09856 * 280.60404 * 12 10 8 37 37 H 1.09003 * 110.09574 * 42.14308 * 12 10 8 38 38 H 1.09001 * 108.84117 * 65.38556 * 13 12 10 39 39 H 1.08994 * 108.84316 * 183.85037 * 13 12 10 40 40 H 1.09000 * 109.16547 * 286.47529 * 14 13 12 41 41 H 1.09005 * 109.07553 * 167.56423 * 14 13 12 42 42 H 0.97000 * 120.00362 * 354.53948 * 19 18 16 43 43 H 1.08997 * 109.47027 * 54.59057 * 27 26 24 44 44 H 1.09000 * 109.46902 * 174.58973 * 27 26 24 45 45 H 1.09001 * 109.46946 * 294.59446 * 27 26 24 46 46 H 1.08997 * 109.46568 * 59.99996 * 28 26 24 47 47 H 1.08998 * 109.47480 * 179.97438 * 28 26 24 48 48 H 1.09000 * 109.47123 * 300.00725 * 28 26 24 49 49 H 1.09008 * 109.46624 * 90.00566 * 30 29 4 50 50 H 1.08999 * 109.47550 * 209.99919 * 30 29 4 51 51 H 1.08999 * 109.47354 * 330.00764 * 30 29 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0595 0.0000 4 6 3.5612 0.6639 -0.0042 5 6 4.7439 1.5440 -0.0086 6 8 5.8604 1.0619 -0.0063 7 7 4.5878 2.8826 -0.0151 8 6 5.7631 3.7571 -0.0190 9 1 6.6617 3.2678 -0.3948 10 6 5.9636 4.5204 1.2566 11 1 5.0232 4.8522 1.6965 12 6 6.9964 4.2245 2.3207 13 6 7.1279 5.5094 3.1610 14 6 7.4716 6.7344 2.3125 15 7 6.6116 6.8229 1.1063 16 6 5.9118 7.9498 0.7661 17 1 5.3412 8.4779 1.5158 18 6 5.9357 8.4134 -0.5420 19 7 6.9124 8.0565 -1.3489 20 14 4.5818 9.5437 -1.1573 21 1 4.5604 10.7822 -0.3382 22 1 3.2716 8.8535 -1.0452 23 1 4.8364 9.8935 -2.5779 24 6 6.5870 5.6027 0.3162 25 1 7.5817 5.3141 -0.0234 26 6 5.5050 5.1680 -0.6268 27 6 4.1253 5.7446 -0.3025 28 6 5.8794 5.2891 -2.1053 29 6 3.5659 -0.6969 0.0025 30 6 4.7802 -1.5896 0.0069 31 8 2.2832 -1.0929 0.0050 32 1 -0.3633 -1.0277 0.0050 33 1 -0.3634 0.5182 0.8873 34 1 -0.3633 0.5095 -0.8926 35 1 3.6972 3.2670 -0.0172 36 1 6.6614 3.3989 2.9486 37 1 7.9518 3.9784 1.8573 38 1 6.1858 5.6895 3.6787 39 1 7.9145 5.3665 3.9019 40 1 8.5144 6.6729 2.0012 41 1 7.3344 7.6336 2.9130 42 1 7.6564 7.5352 -1.0089 43 1 4.1893 6.8314 -0.2482 44 1 3.4202 5.4607 -1.0837 45 1 3.7837 5.3525 0.6554 46 1 6.7522 4.6694 -2.3109 47 1 5.0439 4.9547 -2.7203 48 1 6.1092 6.3289 -2.3380 49 1 5.0728 -1.7998 1.0358 50 1 4.5459 -2.5244 -0.5023 51 1 5.6001 -1.0902 -0.5092 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087309668.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:28:32 Heat of formation + Delta-G solvation = 21.409195 kcal Electronic energy + Delta-G solvation = -32661.654602 eV Core-core repulsion = 28563.736194 eV Total energy + Delta-G solvation = -4097.918408 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -44.51837 -42.45564 -40.14202 -36.91715 -36.03138 -35.29071 -34.28866 -34.06041 -31.92707 -30.97975 -30.82591 -28.56460 -27.86083 -27.01433 -26.02217 -24.51406 -23.77684 -22.72985 -21.88119 -21.45164 -20.89900 -20.15228 -19.06381 -18.51129 -18.13843 -17.14572 -16.84799 -16.36671 -15.88402 -15.73167 -15.63199 -15.52485 -15.27456 -15.04373 -14.98632 -14.57713 -14.42756 -14.29986 -14.14081 -14.10727 -13.59283 -13.54055 -13.50779 -13.24733 -13.19614 -13.06466 -12.70562 -12.54861 -12.49776 -12.34433 -12.27341 -11.90609 -11.89218 -11.74438 -11.68598 -11.56145 -11.49216 -11.24378 -11.04621 -10.44375 -10.16080 -10.01109 -9.71800 -8.66907 -7.97109 -5.44285 -0.01707 0.92143 1.42686 1.60506 1.64276 1.82742 2.06066 2.16230 2.65495 2.87719 3.27506 3.34778 3.47291 3.54955 3.65292 3.69278 3.85752 4.07246 4.12085 4.12485 4.31078 4.33472 4.43825 4.49172 4.54044 4.56942 4.60567 4.65779 4.66131 4.67165 4.77932 4.86246 4.88528 4.92000 4.97765 5.02572 5.06656 5.09446 5.14118 5.17348 5.21061 5.22695 5.27100 5.37714 5.49901 5.57329 5.72744 5.75790 6.09104 6.30255 6.54561 6.58340 7.05569 7.18454 7.81988 8.48104 9.09256 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013643 B = 0.003406 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.803260 B = 8219.586783 C = 9184.112801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.199 3.801 3 N -0.489 5.489 4 C -0.104 4.104 5 C 0.597 3.403 6 O -0.563 6.563 7 N -0.687 5.687 8 C 0.151 3.849 9 H 0.102 0.898 10 C -0.157 4.157 11 H 0.084 0.916 12 C -0.086 4.086 13 C -0.115 4.115 14 C 0.138 3.862 15 N -0.591 5.591 16 C -0.345 4.345 17 H 0.031 0.969 18 C -0.035 4.035 19 N -0.911 5.911 20 Si 1.086 2.914 21 H -0.283 1.283 22 H -0.269 1.269 23 H -0.292 1.292 24 C 0.165 3.835 25 H 0.024 0.976 26 C -0.047 4.047 27 C -0.127 4.127 28 C -0.146 4.146 29 C 0.042 3.958 30 C -0.073 4.073 31 O -0.196 6.196 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.411 0.589 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.052 0.948 39 H 0.078 0.922 40 H 0.006 0.994 41 H 0.047 0.953 42 H 0.254 0.746 43 H 0.077 0.923 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.039 0.961 47 H 0.050 0.950 48 H 0.079 0.921 49 H 0.103 0.897 50 H 0.107 0.893 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 -18.820 3.299 22.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.011 4.011 3 N -0.219 5.219 4 C -0.222 4.222 5 C 0.384 3.616 6 O -0.443 6.443 7 N -0.335 5.335 8 C 0.046 3.954 9 H 0.120 0.880 10 C -0.178 4.178 11 H 0.102 0.898 12 C -0.124 4.124 13 C -0.154 4.154 14 C 0.013 3.987 15 N -0.315 5.315 16 C -0.475 4.475 17 H 0.048 0.952 18 C -0.236 4.236 19 N -0.550 5.550 20 Si 0.912 3.088 21 H -0.209 1.209 22 H -0.195 1.195 23 H -0.218 1.218 24 C 0.057 3.943 25 H 0.042 0.958 26 C -0.048 4.048 27 C -0.184 4.184 28 C -0.203 4.203 29 C -0.015 4.015 30 C -0.129 4.129 31 O -0.084 6.084 32 H 0.132 0.868 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.248 0.752 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.096 0.904 40 H 0.024 0.976 41 H 0.066 0.934 42 H 0.063 0.937 43 H 0.095 0.905 44 H 0.072 0.928 45 H 0.073 0.927 46 H 0.058 0.942 47 H 0.069 0.931 48 H 0.097 0.903 49 H 0.121 0.879 50 H 0.126 0.874 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -11.645 -17.649 1.992 21.238 hybrid contribution 1.001 -0.722 1.328 1.813 sum -10.643 -18.371 3.320 21.489 Atomic orbital electron populations 1.20619 0.77275 1.06845 1.06485 1.27279 0.98026 0.77427 0.98344 1.70714 1.00658 1.31337 1.19177 1.21427 0.92153 0.92985 1.15685 1.17011 0.86524 0.82181 0.75837 1.90732 1.25259 1.75586 1.52747 1.45717 1.10565 1.04861 1.72370 1.22212 0.88599 0.87733 0.96901 0.88049 1.23294 0.99833 0.99280 0.95424 0.89773 1.21093 0.97666 0.96873 0.96763 1.21827 1.01451 0.94437 0.97694 1.21239 0.92164 0.96495 0.88753 1.43969 1.53089 1.09659 1.24747 1.19623 1.25632 1.05413 0.96818 0.95171 1.26878 1.01588 0.99771 0.95385 1.70760 1.08118 1.37264 1.38825 0.83310 0.74758 0.75237 0.75538 1.20893 1.19493 1.21771 1.21139 0.93708 0.86334 0.93153 0.95830 1.21658 0.96532 0.92107 0.94528 1.21706 0.93184 1.03722 0.99805 1.21938 0.99615 1.04128 0.94662 1.24130 0.84833 0.94228 0.98273 1.20674 0.88653 0.98046 1.05548 1.84354 1.16009 1.38134 1.69918 0.86773 0.87043 0.87029 0.75193 0.92209 0.92926 0.92903 0.90367 0.97623 0.93420 0.93650 0.90455 0.92804 0.92726 0.94164 0.93065 0.90257 0.87858 0.87433 0.88464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.47 10.51 71.23 0.75 0.27 16 2 C 0.20 3.97 8.30 88.39 0.73 4.71 16 3 N -0.49 -13.15 11.06 -293.03 -3.24 -16.39 16 4 C -0.10 -3.05 6.99 40.41 0.28 -2.77 16 5 C 0.60 20.23 7.81 86.66 0.68 20.91 16 6 O -0.56 -20.87 14.40 -4.08 -0.06 -20.92 16 7 N -0.69 -23.23 5.30 -458.05 -2.43 -25.66 16 8 C 0.15 5.63 3.49 42.45 0.15 5.78 16 9 H 0.10 4.05 7.38 -2.38 -0.02 4.03 16 10 C -0.16 -6.04 2.85 -14.18 -0.04 -6.08 16 11 H 0.08 3.42 5.99 -2.39 -0.01 3.40 16 12 C -0.09 -3.03 6.11 30.38 0.19 -2.85 16 13 C -0.12 -4.00 5.92 30.94 0.18 -3.82 16 14 C 0.14 5.88 6.50 85.99 0.56 6.44 16 15 N -0.59 -28.61 2.47 -689.15 -1.70 -30.31 16 16 C -0.35 -18.26 7.67 84.03 0.64 -17.62 16 17 H 0.03 1.67 7.91 -2.91 -0.02 1.65 16 18 C -0.04 -1.87 3.94 84.86 0.33 -1.54 16 19 N -0.91 -51.51 10.80 21.65 0.23 -51.28 16 20 Si 1.09 48.41 28.75 68.60 1.97 50.38 16 21 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 22 H -0.27 -11.11 7.10 99.48 0.71 -10.41 16 23 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 24 C 0.16 7.34 1.50 42.86 0.06 7.40 16 25 H 0.02 1.17 7.97 -2.39 -0.02 1.15 16 26 C -0.05 -1.92 1.06 -55.19 -0.06 -1.98 16 27 C -0.13 -5.08 7.63 71.98 0.55 -4.53 16 28 C -0.15 -6.15 9.25 71.98 0.67 -5.49 16 29 C 0.04 1.02 7.44 25.19 0.19 1.20 16 30 C -0.07 -1.31 9.88 71.24 0.70 -0.61 16 31 O -0.20 -4.12 10.73 0.47 0.01 -4.12 16 32 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.41 13.32 7.12 -92.71 -0.66 12.66 16 36 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 37 H 0.05 1.87 8.04 -2.39 -0.02 1.85 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.05 2.04 8.01 -2.38 -0.02 2.02 16 42 H 0.25 15.03 7.41 -92.71 -0.69 14.34 16 43 H 0.08 3.53 3.71 -2.39 -0.01 3.52 16 44 H 0.05 1.91 8.06 -2.39 -0.02 1.89 16 45 H 0.05 2.05 5.73 -2.39 -0.01 2.04 16 46 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 47 H 0.05 1.93 8.08 -2.39 -0.02 1.91 16 48 H 0.08 3.87 5.48 -2.39 -0.01 3.86 16 49 H 0.10 1.61 8.14 -2.38 -0.02 1.59 16 50 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 51 H 0.10 2.13 6.48 -2.39 -0.02 2.12 16 Total: -1.00 -66.03 390.33 1.73 -64.30 By element: Atomic # 1 Polarization: 34.19 SS G_CDS: 0.38 Total: 34.56 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: 6.57 Total: -0.56 kcal Atomic # 7 Polarization: -116.51 SS G_CDS: -7.14 Total: -123.64 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: -0.05 Total: -25.04 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 1.97 Total: 50.38 kcal Total: -66.03 1.73 -64.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087309668.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.711 kcal (2) G-P(sol) polarization free energy of solvation -66.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds