Wall clock time and date at job start Wed Apr 1 2020 04:38:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30178 * 126.80033 * 2 1 4 4 O 1.20915 * 111.60675 * 179.74040 * 3 2 1 5 5 C 1.34046 * 111.56740 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.77997 * 179.97438 * 5 4 3 7 7 C 1.35448 * 106.44402 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00756 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47204 * 269.97321 * 8 7 5 10 10 C 1.50702 * 109.47204 * 179.97438 * 9 8 7 11 11 O 1.21285 * 120.00124 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.47384 * 125.73911 * 180.02562 * 12 10 9 14 14 C 1.55414 * 106.73546 * 179.05584 * 13 12 10 15 15 H 1.08999 * 112.75958 * 146.40849 * 14 13 12 16 16 C 1.52909 * 106.56906 * 270.28550 * 14 13 12 17 17 C 1.51886 * 111.49597 * 169.08859 * 16 14 13 18 18 N 1.44345 * 113.47975 * 321.32581 * 17 16 14 19 19 C 1.36936 * 116.42694 * 187.47836 * 18 17 16 20 20 H 1.07998 * 120.00440 * 153.65407 * 19 18 17 21 21 C 1.38812 * 119.99839 * 333.66013 * 19 18 17 22 22 N 1.31625 * 119.99938 * 335.43994 * 21 19 18 23 23 Si 1.86798 * 120.00173 * 155.44365 * 21 19 18 24 24 H 1.48499 * 109.46831 * 94.84693 * 23 21 19 25 25 H 1.48502 * 109.47222 * 214.84388 * 23 21 19 26 26 H 1.48498 * 109.46900 * 334.84610 * 23 21 19 27 27 C 1.43983 * 127.14922 * 7.50551 * 18 17 16 28 28 C 1.49783 * 116.30127 * 2.84347 * 27 18 17 29 29 H 1.09005 * 109.24980 * 141.40842 * 28 27 18 30 30 C 1.47932 * 125.73759 * 359.68661 * 12 10 9 31 31 H 1.08994 * 109.47305 * 90.02686 * 1 2 3 32 32 H 1.09001 * 109.46662 * 210.02631 * 1 2 3 33 33 H 1.09001 * 109.47224 * 330.01872 * 1 2 3 34 34 H 1.09004 * 109.46798 * 0.02562 * 6 5 4 35 35 H 1.08995 * 109.46979 * 120.02602 * 6 5 4 36 36 H 1.08996 * 109.47380 * 240.02697 * 6 5 4 37 37 H 1.08997 * 109.47216 * 29.97539 * 8 7 5 38 38 H 1.09007 * 109.47362 * 149.97429 * 8 7 5 39 39 H 1.09003 * 109.47343 * 299.99500 * 9 8 7 40 40 H 1.08996 * 109.47306 * 59.99973 * 9 8 7 41 41 H 1.08999 * 110.00139 * 298.37569 * 13 12 10 42 42 H 1.08998 * 110.00608 * 59.74184 * 13 12 10 43 43 H 1.09002 * 109.03797 * 290.43943 * 16 14 13 44 44 H 1.08995 * 109.04380 * 49.31770 * 16 14 13 45 45 H 1.08997 * 108.95420 * 199.97514 * 17 16 14 46 46 H 1.08998 * 108.01746 * 82.00632 * 17 16 14 47 47 H 0.96996 * 120.00056 * 179.97438 * 22 21 19 48 48 H 1.09001 * 108.10945 * 241.07309 * 27 18 17 49 49 H 1.08997 * 108.11810 * 124.62791 * 27 18 17 50 50 H 1.09006 * 110.56634 * 274.14605 * 30 12 10 51 51 H 1.08994 * 110.56949 * 37.00811 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7255 0.0051 5 6 3.6025 -0.6067 0.0098 6 6 4.9022 -1.3694 0.0162 7 6 2.3541 -1.1320 0.0065 8 6 1.9592 -2.5863 0.0100 9 6 1.8309 -3.0834 -1.4313 10 6 1.4366 -4.5379 -1.4278 11 8 1.2747 -5.1198 -0.3761 12 7 1.2649 -5.1924 -2.5935 13 6 0.8813 -6.6081 -2.7374 14 6 0.7864 -6.8932 -4.2622 15 1 1.0853 -7.9091 -4.5207 16 6 -0.6533 -6.5847 -4.6747 17 6 -0.8080 -6.5680 -6.1856 18 7 0.3137 -5.9731 -6.8720 19 6 0.1715 -5.7821 -8.2205 20 1 0.7286 -5.0015 -8.7172 21 6 -0.6890 -6.5917 -8.9492 22 7 -0.9893 -7.7958 -8.5104 23 14 -1.4207 -5.9726 -10.5525 24 1 -0.5857 -6.4368 -11.6894 25 1 -2.8003 -6.5008 -10.7036 26 1 -1.4576 -4.4881 -10.5390 27 6 1.5661 -5.5588 -6.2948 28 6 1.7448 -5.8297 -4.8326 29 1 2.7736 -6.1384 -4.6474 30 6 1.4229 -4.6087 -3.9435 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 5.7357 -0.6669 0.0170 35 1 4.9526 -1.9939 0.9081 36 1 4.9585 -1.9989 -0.8718 37 1 2.7209 -3.1684 0.5286 38 1 1.0031 -2.7021 0.5207 39 1 1.0690 -2.5014 -1.9499 40 1 2.7868 -2.9677 -1.9420 41 1 1.6392 -7.2476 -2.2849 42 1 -0.0851 -6.7826 -2.2646 43 1 -1.3153 -7.3364 -4.2447 44 1 -0.9318 -5.6044 -4.2879 45 1 -1.7108 -6.0141 -6.4429 46 1 -0.9205 -7.5979 -6.5243 47 1 -1.5908 -8.3614 -9.0193 48 1 1.6755 -4.4865 -6.4567 49 1 2.3700 -6.0608 -6.8332 50 1 0.4974 -4.1309 -4.2649 51 1 2.2480 -3.8966 -3.9587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088196295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:38 Heat of formation + Delta-G solvation = 39.489928 kcal Electronic energy + Delta-G solvation = -31044.129074 eV Core-core repulsion = 26946.994706 eV Total energy + Delta-G solvation = -4097.134368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -45.16409 -40.40625 -38.58511 -36.14622 -35.63451 -34.05393 -32.78802 -32.02254 -31.50331 -30.28197 -28.94723 -28.36902 -27.73193 -25.86835 -25.05886 -23.33834 -22.22592 -21.72796 -21.27403 -20.35883 -19.17970 -17.90444 -17.87707 -17.38999 -17.13961 -16.69433 -16.12266 -15.51833 -14.98588 -14.89402 -14.56378 -14.20912 -13.95233 -13.80808 -13.73917 -13.58626 -13.48302 -13.20565 -13.11283 -12.99913 -12.94378 -12.75470 -12.65254 -12.43139 -12.27449 -12.12015 -11.79811 -11.55811 -11.30787 -11.13768 -11.02999 -10.78232 -10.55670 -10.31894 -10.26439 -10.12385 -9.95904 -9.75717 -9.69873 -9.60890 -9.35394 -8.59051 -8.51214 -6.66485 -5.66406 -3.30400 1.19143 1.92338 2.60475 2.83033 3.01142 3.34798 3.43096 3.46440 3.91786 4.16957 4.33819 4.46459 4.51048 4.70201 4.73419 4.77768 4.89792 4.94837 5.02666 5.07799 5.08792 5.21762 5.21889 5.27236 5.29689 5.35324 5.39446 5.47853 5.48737 5.53368 5.61918 5.64868 5.73051 5.77473 5.81197 5.86776 5.98613 6.01604 6.10514 6.15362 6.33902 6.48685 6.52940 6.61442 6.74412 6.80886 7.26766 7.53810 7.78090 7.88953 8.04273 8.13185 8.48881 9.25072 9.94899 10.23930 11.19889 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002294 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.001576 B =12200.343311 C =12968.598995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.025 3.975 3 N -0.369 5.369 4 O 0.096 5.904 5 C -0.029 4.029 6 C -0.075 4.075 7 C -0.199 4.199 8 C -0.023 4.023 9 C -0.131 4.131 10 C 0.527 3.473 11 O -0.550 6.550 12 N -0.616 5.616 13 C 0.109 3.891 14 C -0.081 4.081 15 H 0.098 0.902 16 C -0.122 4.122 17 C 0.156 3.844 18 N -0.585 5.585 19 C -0.269 4.269 20 H 0.066 0.934 21 C 0.006 3.994 22 N -0.889 5.889 23 Si 0.897 3.103 24 H -0.288 1.288 25 H -0.289 1.289 26 H -0.279 1.279 27 C 0.176 3.824 28 C -0.097 4.097 29 H 0.074 0.926 30 C 0.105 3.895 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.083 0.917 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.063 0.937 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.046 0.954 45 H 0.019 0.981 46 H 0.080 0.920 47 H 0.253 0.747 48 H 0.014 0.986 49 H 0.024 0.976 50 H 0.077 0.923 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.131 9.837 17.274 21.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.134 4.134 3 N -0.075 5.075 4 O 0.031 5.969 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.203 4.203 8 C -0.061 4.061 9 C -0.171 4.171 10 C 0.316 3.684 11 O -0.428 6.428 12 N -0.349 5.349 13 C -0.014 4.014 14 C -0.100 4.100 15 H 0.116 0.884 16 C -0.160 4.160 17 C 0.031 3.969 18 N -0.310 5.310 19 C -0.399 4.399 20 H 0.083 0.917 21 C -0.194 4.194 22 N -0.533 5.533 23 Si 0.727 3.273 24 H -0.215 1.215 25 H -0.215 1.215 26 H -0.204 1.204 27 C 0.049 3.951 28 C -0.117 4.117 29 H 0.093 0.907 30 C -0.017 4.017 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.103 0.897 38 H 0.103 0.897 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.081 0.919 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.037 0.963 46 H 0.097 0.903 47 H 0.063 0.937 48 H 0.032 0.968 49 H 0.042 0.958 50 H 0.095 0.905 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.748 10.769 17.922 22.298 hybrid contribution -0.563 -0.430 -1.003 1.228 sum 7.185 10.340 16.919 21.090 Atomic orbital electron populations 1.20200 0.85944 1.03811 1.03632 1.23483 0.98969 0.88464 1.02510 1.73844 0.89292 1.23964 1.20359 1.84803 1.21659 1.22547 1.67867 1.24289 0.98260 0.83796 1.02944 1.20360 0.89975 0.98611 1.04285 1.20968 0.91627 0.97516 1.10202 1.19580 1.03558 0.87327 0.95644 1.21598 1.03889 0.92812 0.98788 1.20233 0.77167 0.88682 0.82310 1.90693 1.52296 1.69358 1.30487 1.48768 1.68033 1.12180 1.05967 1.22423 1.00151 0.81364 0.97415 1.22063 0.96855 0.99706 0.91386 0.88379 1.21725 0.94409 1.00237 0.99639 1.20264 0.88435 1.01519 0.86648 1.42667 1.10349 1.72636 1.05327 1.19107 1.24944 1.11667 0.84146 0.91650 1.24953 1.02005 0.94545 0.97874 1.70004 1.37481 1.06457 1.39341 0.86364 0.78690 0.78668 0.83586 1.21476 1.21534 1.20435 1.19243 0.89581 0.97164 0.89069 1.21643 0.99469 0.94350 0.96207 0.90736 1.22595 1.01573 0.96722 0.80804 0.89956 0.89877 0.90551 0.89846 0.89073 0.89084 0.89737 0.89695 0.88770 0.88891 0.91881 0.91387 0.92216 0.93556 0.96282 0.90308 0.93689 0.96849 0.95833 0.90504 0.90784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.64 10.39 36.01 0.37 -0.26 16 2 C 0.02 0.26 7.33 -82.10 -0.60 -0.34 16 3 N -0.37 -4.48 12.07 33.42 0.40 -4.07 16 4 O 0.10 1.05 11.20 17.16 0.19 1.24 16 5 C -0.03 -0.26 7.49 -35.30 -0.26 -0.52 16 6 C -0.07 -0.39 10.23 36.00 0.37 -0.02 16 7 C -0.20 -1.90 5.57 -104.42 -0.58 -2.48 16 8 C -0.02 -0.21 4.83 -27.89 -0.13 -0.34 16 9 C -0.13 -1.24 4.70 -27.89 -0.13 -1.37 16 10 C 0.53 6.84 7.85 -10.98 -0.09 6.75 16 11 O -0.55 -8.82 16.32 5.55 0.09 -8.73 16 12 N -0.62 -8.15 3.34 -169.43 -0.57 -8.71 16 13 C 0.11 1.51 6.25 -2.28 -0.01 1.49 16 14 C -0.08 -1.25 3.60 -88.81 -0.32 -1.57 16 15 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 16 C -0.12 -2.13 4.83 -27.34 -0.13 -2.26 16 17 C 0.16 3.53 5.07 -5.76 -0.03 3.50 16 18 N -0.59 -13.79 3.23 -179.51 -0.58 -14.37 16 19 C -0.27 -7.11 9.27 -15.06 -0.14 -7.25 16 20 H 0.07 1.71 7.94 -52.49 -0.42 1.29 16 21 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 22 N -0.89 -24.85 10.87 55.49 0.60 -24.25 16 23 Si 0.90 21.12 29.62 -169.99 -5.03 16.09 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 C 0.18 3.37 5.75 -6.97 -0.04 3.33 16 28 C -0.10 -1.46 2.85 -90.89 -0.26 -1.72 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 C 0.11 1.36 5.48 -2.51 -0.01 1.34 16 31 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.58 7.65 -51.93 -0.40 0.19 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.08 0.76 8.03 -51.93 -0.42 0.34 16 38 H 0.08 0.83 7.61 -51.93 -0.40 0.43 16 39 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.09 0.75 7.87 -51.93 -0.41 0.34 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.07 0.97 7.78 -51.93 -0.40 0.57 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.05 0.79 6.68 -51.93 -0.35 0.44 16 45 H 0.02 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.08 2.05 5.80 -51.93 -0.30 1.75 16 47 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 48 H 0.01 0.26 7.81 -51.93 -0.41 -0.15 16 49 H 0.02 0.48 8.13 -51.93 -0.42 0.06 16 50 H 0.08 1.08 7.22 -51.93 -0.37 0.71 16 51 H 0.07 0.78 7.51 -51.93 -0.39 0.39 16 LS Contribution 402.26 15.07 6.06 6.06 Total: -1.00 -31.70 402.26 -9.38 -41.09 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: -8.46 Total: -2.70 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: -2.09 Total: -1.65 kcal Atomic # 7 Polarization: -51.27 SS G_CDS: -0.14 Total: -51.40 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: 0.28 Total: -7.49 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.70 -9.38 -41.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088196295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.577 kcal (2) G-P(sol) polarization free energy of solvation -31.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds