Wall clock time and date at job start Wed Apr 1 2020 04:38:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50705 * 1
3 3 N 1.30178 * 126.80033 * 2 1
4 4 O 1.20915 * 111.60675 * 179.74040 * 3 2 1
5 5 C 1.34046 * 111.56740 * 359.97438 * 4 3 2
6 6 C 1.50698 * 126.77997 * 179.97438 * 5 4 3
7 7 C 1.35448 * 106.44402 * 0.02562 * 5 4 3
8 8 C 1.50702 * 128.00756 * 180.02562 * 7 5 4
9 9 C 1.52993 * 109.47204 * 269.97321 * 8 7 5
10 10 C 1.50702 * 109.47204 * 179.97438 * 9 8 7
11 11 O 1.21285 * 120.00124 * 359.97438 * 10 9 8
12 12 N 1.34781 * 120.00104 * 180.02562 * 10 9 8
13 13 C 1.47384 * 125.73911 * 180.02562 * 12 10 9
14 14 C 1.55414 * 106.73546 * 179.05584 * 13 12 10
15 15 H 1.08999 * 112.75958 * 146.40849 * 14 13 12
16 16 C 1.52909 * 106.56906 * 270.28550 * 14 13 12
17 17 C 1.51886 * 111.49597 * 169.08859 * 16 14 13
18 18 N 1.44345 * 113.47975 * 321.32581 * 17 16 14
19 19 C 1.36936 * 116.42694 * 187.47836 * 18 17 16
20 20 H 1.07998 * 120.00440 * 153.65407 * 19 18 17
21 21 C 1.38812 * 119.99839 * 333.66013 * 19 18 17
22 22 N 1.31625 * 119.99938 * 335.43994 * 21 19 18
23 23 Si 1.86798 * 120.00173 * 155.44365 * 21 19 18
24 24 H 1.48499 * 109.46831 * 94.84693 * 23 21 19
25 25 H 1.48502 * 109.47222 * 214.84388 * 23 21 19
26 26 H 1.48498 * 109.46900 * 334.84610 * 23 21 19
27 27 C 1.43983 * 127.14922 * 7.50551 * 18 17 16
28 28 C 1.49783 * 116.30127 * 2.84347 * 27 18 17
29 29 H 1.09005 * 109.24980 * 141.40842 * 28 27 18
30 30 C 1.47932 * 125.73759 * 359.68661 * 12 10 9
31 31 H 1.08994 * 109.47305 * 90.02686 * 1 2 3
32 32 H 1.09001 * 109.46662 * 210.02631 * 1 2 3
33 33 H 1.09001 * 109.47224 * 330.01872 * 1 2 3
34 34 H 1.09004 * 109.46798 * 0.02562 * 6 5 4
35 35 H 1.08995 * 109.46979 * 120.02602 * 6 5 4
36 36 H 1.08996 * 109.47380 * 240.02697 * 6 5 4
37 37 H 1.08997 * 109.47216 * 29.97539 * 8 7 5
38 38 H 1.09007 * 109.47362 * 149.97429 * 8 7 5
39 39 H 1.09003 * 109.47343 * 299.99500 * 9 8 7
40 40 H 1.08996 * 109.47306 * 59.99973 * 9 8 7
41 41 H 1.08999 * 110.00139 * 298.37569 * 13 12 10
42 42 H 1.08998 * 110.00608 * 59.74184 * 13 12 10
43 43 H 1.09002 * 109.03797 * 290.43943 * 16 14 13
44 44 H 1.08995 * 109.04380 * 49.31770 * 16 14 13
45 45 H 1.08997 * 108.95420 * 199.97514 * 17 16 14
46 46 H 1.08998 * 108.01746 * 82.00632 * 17 16 14
47 47 H 0.96996 * 120.00056 * 179.97438 * 22 21 19
48 48 H 1.09001 * 108.10945 * 241.07309 * 27 18 17
49 49 H 1.08997 * 108.11810 * 124.62791 * 27 18 17
50 50 H 1.09006 * 110.56634 * 274.14605 * 30 12 10
51 51 H 1.08994 * 110.56949 * 37.00811 * 30 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2869 1.0424 0.0000
4 8 3.4537 0.7255 0.0051
5 6 3.6025 -0.6067 0.0098
6 6 4.9022 -1.3694 0.0162
7 6 2.3541 -1.1320 0.0065
8 6 1.9592 -2.5863 0.0100
9 6 1.8309 -3.0834 -1.4313
10 6 1.4366 -4.5379 -1.4278
11 8 1.2747 -5.1198 -0.3761
12 7 1.2649 -5.1924 -2.5935
13 6 0.8813 -6.6081 -2.7374
14 6 0.7864 -6.8932 -4.2622
15 1 1.0853 -7.9091 -4.5207
16 6 -0.6533 -6.5847 -4.6747
17 6 -0.8080 -6.5680 -6.1856
18 7 0.3137 -5.9731 -6.8720
19 6 0.1715 -5.7821 -8.2205
20 1 0.7286 -5.0015 -8.7172
21 6 -0.6890 -6.5917 -8.9492
22 7 -0.9893 -7.7958 -8.5104
23 14 -1.4207 -5.9726 -10.5525
24 1 -0.5857 -6.4368 -11.6894
25 1 -2.8003 -6.5008 -10.7036
26 1 -1.4576 -4.4881 -10.5390
27 6 1.5661 -5.5588 -6.2948
28 6 1.7448 -5.8297 -4.8326
29 1 2.7736 -6.1384 -4.6474
30 6 1.4229 -4.6087 -3.9435
31 1 -0.3633 -0.0005 -1.0276
32 1 -0.3633 -0.8898 0.5143
33 1 -0.3634 0.8902 0.5135
34 1 5.7357 -0.6669 0.0170
35 1 4.9526 -1.9939 0.9081
36 1 4.9585 -1.9989 -0.8718
37 1 2.7209 -3.1684 0.5286
38 1 1.0031 -2.7021 0.5207
39 1 1.0690 -2.5014 -1.9499
40 1 2.7868 -2.9677 -1.9420
41 1 1.6392 -7.2476 -2.2849
42 1 -0.0851 -6.7826 -2.2646
43 1 -1.3153 -7.3364 -4.2447
44 1 -0.9318 -5.6044 -4.2879
45 1 -1.7108 -6.0141 -6.4429
46 1 -0.9205 -7.5979 -6.5243
47 1 -1.5908 -8.3614 -9.0193
48 1 1.6755 -4.4865 -6.4567
49 1 2.3700 -6.0608 -6.8332
50 1 0.4974 -4.1309 -4.2649
51 1 2.2480 -3.8966 -3.9587
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001088196295.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:38:37
Heat of formation + Delta-G solvation = 22.119201 kcal
Electronic energy + Delta-G solvation = -31044.882325 eV
Core-core repulsion = 26946.994706 eV
Total energy + Delta-G solvation = -4097.887619 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-45.91050 -41.55173 -39.79872 -37.32318 -36.78040 -34.73486 -34.25520 -33.24129
-32.64502 -31.85934 -29.65200 -29.45937 -28.51933 -27.17857 -26.26225 -24.78612
-23.62019 -23.01483 -22.19976 -21.03118 -20.16788 -19.35887 -18.89190 -18.67351
-18.18633 -17.59755 -17.24522 -16.88838 -16.43742 -16.05461 -15.67267 -15.55885
-15.29696 -14.92215 -14.69361 -14.64512 -14.31418 -14.28592 -14.01589 -13.93886
-13.78636 -13.59842 -13.47724 -13.43708 -13.36978 -13.16651 -12.96594 -12.85394
-12.81074 -12.49738 -12.26442 -12.21117 -12.02830 -11.77992 -11.72280 -11.45745
-11.27535 -11.19354 -10.96566 -10.77137 -10.49625 -10.04972 -9.66568 -8.64335
-7.66796 -5.35832 0.50642 1.18969 1.46154 1.49629 1.58922 1.62515
1.97704 2.24541 2.52964 3.21273 3.24338 3.38004 3.50262 3.54960
3.75308 3.78783 3.82960 3.87788 4.04001 4.15835 4.25005 4.29229
4.37747 4.41579 4.48373 4.53688 4.61549 4.63476 4.67300 4.68705
4.70423 4.73722 4.78788 4.82988 4.93447 4.94928 5.00546 5.05700
5.06985 5.08651 5.10245 5.17944 5.24324 5.31732 5.35882 5.37612
5.45639 5.71885 5.97496 6.46408 6.52536 7.13272 7.24403 7.32704
8.08686 8.26113 9.14464
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.014851 B = 0.002294 C = 0.002159
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1885.001576 B =12200.343311 C =12968.598995
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C 0.015 3.985
3 N -0.402 5.402
4 O 0.081 5.919
5 C -0.021 4.021
6 C -0.077 4.077
7 C -0.210 4.210
8 C -0.014 4.014
9 C -0.123 4.123
10 C 0.528 3.472
11 O -0.582 6.582
12 N -0.616 5.616
13 C 0.117 3.883
14 C -0.079 4.079
15 H 0.092 0.908
16 C -0.110 4.110
17 C 0.165 3.835
18 N -0.597 5.597
19 C -0.281 4.281
20 H 0.065 0.935
21 C -0.044 4.044
22 N -0.917 5.917
23 Si 0.956 3.044
24 H -0.285 1.285
25 H -0.293 1.293
26 H -0.272 1.272
27 C 0.173 3.827
28 C -0.095 4.095
29 H 0.097 0.903
30 C 0.115 3.885
31 H 0.089 0.911
32 H 0.093 0.907
33 H 0.077 0.923
34 H 0.095 0.905
35 H 0.104 0.896
36 H 0.105 0.895
37 H 0.087 0.913
38 H 0.076 0.924
39 H 0.102 0.898
40 H 0.116 0.884
41 H 0.072 0.928
42 H 0.064 0.936
43 H 0.069 0.931
44 H 0.053 0.947
45 H -0.011 1.011
46 H 0.045 0.955
47 H 0.249 0.751
48 H 0.025 0.975
49 H 0.010 0.990
50 H 0.066 0.934
51 H 0.107 0.893
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.593 10.750 18.188 23.203
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.143 4.143
3 N -0.111 5.111
4 O 0.020 5.980
5 C -0.085 4.085
6 C -0.134 4.134
7 C -0.214 4.214
8 C -0.052 4.052
9 C -0.162 4.162
10 C 0.319 3.681
11 O -0.463 6.463
12 N -0.349 5.349
13 C -0.005 4.005
14 C -0.098 4.098
15 H 0.110 0.890
16 C -0.148 4.148
17 C 0.039 3.961
18 N -0.321 5.321
19 C -0.411 4.411
20 H 0.083 0.917
21 C -0.241 4.241
22 N -0.563 5.563
23 Si 0.785 3.215
24 H -0.212 1.212
25 H -0.220 1.220
26 H -0.197 1.197
27 C 0.048 3.952
28 C -0.114 4.114
29 H 0.115 0.885
30 C -0.007 4.007
31 H 0.107 0.893
32 H 0.111 0.889
33 H 0.096 0.904
34 H 0.114 0.886
35 H 0.122 0.878
36 H 0.124 0.876
37 H 0.106 0.894
38 H 0.095 0.905
39 H 0.120 0.880
40 H 0.134 0.866
41 H 0.090 0.910
42 H 0.082 0.918
43 H 0.088 0.912
44 H 0.072 0.928
45 H 0.007 0.993
46 H 0.062 0.938
47 H 0.058 0.942
48 H 0.042 0.958
49 H 0.028 0.972
50 H 0.084 0.916
51 H 0.125 0.875
Dipole moment (debyes) X Y Z Total
from point charges 9.246 11.707 18.838 24.030
hybrid contribution -0.982 -0.722 -1.288 1.773
sum 8.265 10.985 17.550 22.293
Atomic orbital electron populations
1.20293 0.84748 1.04406 1.04231 1.23934 1.00004 0.88645 1.01719
1.73840 0.89906 1.25087 1.22236 1.84765 1.21342 1.23725 1.68212
1.24954 0.99538 0.83087 1.00884 1.20591 0.88475 0.98793 1.05514
1.21006 0.91768 0.97357 1.11272 1.19472 1.03255 0.87008 0.95461
1.21606 1.05161 0.90156 0.99323 1.20780 0.76142 0.89698 0.81453
1.90687 1.53693 1.70344 1.31545 1.48799 1.67997 1.11840 1.06287
1.22246 1.00379 0.82265 0.95656 1.21975 0.95329 0.99664 0.92830
0.88987 1.21565 0.96465 1.01091 0.95674 1.19994 0.87361 0.98741
0.89975 1.42907 1.12067 1.72365 1.04790 1.19434 1.24711 1.11303
0.85679 0.91718 1.25654 1.02756 0.94773 1.00954 1.70167 1.38149
1.07393 1.40549 0.85436 0.77501 0.78302 0.80287 1.21187 1.21984
1.19726 1.19346 0.87027 0.97231 0.91605 1.21555 1.00588 0.95487
0.93777 0.88513 1.22511 1.02346 0.95984 0.79862 0.89273 0.88879
0.90379 0.88575 0.87787 0.87617 0.89409 0.90536 0.87973 0.86632
0.90989 0.91797 0.91246 0.92783 0.99317 0.93796 0.94168 0.95756
0.97171 0.91562 0.87498
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -1.19 10.39 71.24 0.74 -0.45 16
2 C 0.02 0.31 7.33 43.58 0.32 0.63 16
3 N -0.40 -9.50 12.07 -49.55 -0.60 -10.10 16
4 O 0.08 1.70 11.20 71.59 0.80 2.50 16
5 C -0.02 -0.33 7.49 25.04 0.19 -0.14 16
6 C -0.08 -0.54 10.23 71.24 0.73 0.18 16
7 C -0.21 -3.57 5.57 -19.74 -0.11 -3.68 16
8 C -0.01 -0.22 4.83 29.85 0.14 -0.07 16
9 C -0.12 -1.90 4.70 29.85 0.14 -1.76 16
10 C 0.53 12.09 7.85 87.66 0.69 12.78 16
11 O -0.58 -17.35 16.32 -3.05 -0.05 -17.40 16
12 N -0.62 -14.33 3.34 -808.34 -2.70 -17.03 16
13 C 0.12 2.96 6.25 87.04 0.54 3.51 16
14 C -0.08 -2.30 3.60 -9.62 -0.03 -2.34 16
15 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16
16 C -0.11 -3.77 4.83 30.20 0.15 -3.62 16
17 C 0.16 7.62 5.07 86.41 0.44 8.05 16
18 N -0.60 -28.28 3.23 -721.85 -2.33 -30.62 16
19 C -0.28 -14.99 9.27 84.03 0.78 -14.21 16
20 H 0.07 3.39 7.94 -2.91 -0.02 3.36 16
21 C -0.04 -2.43 4.94 84.86 0.42 -2.01 16
22 N -0.92 -52.72 10.87 21.65 0.24 -52.48 16
23 Si 0.96 43.98 29.62 68.60 2.03 46.01 16
24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16
25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16
26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16
27 C 0.17 6.44 5.75 85.81 0.49 6.93 16
28 C -0.09 -2.62 2.85 -10.97 -0.03 -2.65 16
29 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16
30 C 0.12 2.56 5.48 86.59 0.47 3.03 16
31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16
32 H 0.09 1.17 7.65 -2.39 -0.02 1.16 16
33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16
34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16
35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16
36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16
37 H 0.09 1.34 8.03 -2.39 -0.02 1.32 16
38 H 0.08 1.35 7.61 -2.38 -0.02 1.33 16
39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16
40 H 0.12 1.31 7.87 -2.39 -0.02 1.29 16
41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16
42 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16
43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16
44 H 0.05 1.77 6.68 -2.39 -0.02 1.75 16
45 H -0.01 -0.58 8.09 -2.39 -0.02 -0.60 16
46 H 0.04 2.39 5.80 -2.39 -0.01 2.37 16
47 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16
48 H 0.02 0.87 7.81 -2.39 -0.02 0.85 16
49 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16
50 H 0.07 1.66 7.22 -2.38 -0.02 1.65 16
51 H 0.11 1.73 7.51 -2.39 -0.02 1.71 16
Total: -1.00 -70.21 402.26 4.37 -65.84
By element:
Atomic # 1 Polarization: 8.16 SS G_CDS: 0.92 Total: 9.08 kcal
Atomic # 6 Polarization: -1.88 SS G_CDS: 6.07 Total: 4.19 kcal
Atomic # 7 Polarization: -104.83 SS G_CDS: -5.40 Total: -110.23 kcal
Atomic # 8 Polarization: -15.65 SS G_CDS: 0.75 Total: -14.89 kcal
Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal
Total: -70.21 4.37 -65.84 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001088196295.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 87.961 kcal
(2) G-P(sol) polarization free energy of solvation -70.214 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.747 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal
(6) G-S(sol) free energy of system = (1) + (5) 22.119 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds