Wall clock time and date at job start Wed Apr 1 2020 04:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30178 * 126.80033 * 2 1 4 4 O 1.20915 * 111.60675 * 179.74040 * 3 2 1 5 5 C 1.34046 * 111.56740 * 359.97438 * 4 3 2 6 6 C 1.50698 * 126.77997 * 179.97438 * 5 4 3 7 7 C 1.35448 * 106.44402 * 0.02562 * 5 4 3 8 8 C 1.50702 * 128.00756 * 180.02562 * 7 5 4 9 9 C 1.52993 * 109.47204 * 269.97321 * 8 7 5 10 10 C 1.50702 * 109.47204 * 179.97438 * 9 8 7 11 11 O 1.21285 * 120.00124 * 359.97438 * 10 9 8 12 12 N 1.34781 * 120.00104 * 180.02562 * 10 9 8 13 13 C 1.47384 * 125.73911 * 180.02562 * 12 10 9 14 14 C 1.55414 * 106.73546 * 179.05584 * 13 12 10 15 15 H 1.08999 * 112.75958 * 146.40849 * 14 13 12 16 16 C 1.52909 * 106.56906 * 270.28550 * 14 13 12 17 17 C 1.51886 * 111.49597 * 169.08859 * 16 14 13 18 18 N 1.44345 * 113.47975 * 321.32581 * 17 16 14 19 19 C 1.36936 * 116.42694 * 187.47836 * 18 17 16 20 20 H 1.07998 * 120.00440 * 153.65407 * 19 18 17 21 21 C 1.38812 * 119.99839 * 333.66013 * 19 18 17 22 22 N 1.31625 * 119.99938 * 335.43994 * 21 19 18 23 23 Si 1.86798 * 120.00173 * 155.44365 * 21 19 18 24 24 H 1.48499 * 109.46831 * 94.84693 * 23 21 19 25 25 H 1.48502 * 109.47222 * 214.84388 * 23 21 19 26 26 H 1.48498 * 109.46900 * 334.84610 * 23 21 19 27 27 C 1.43983 * 127.14922 * 7.50551 * 18 17 16 28 28 C 1.49783 * 116.30127 * 2.84347 * 27 18 17 29 29 H 1.09005 * 109.24980 * 141.40842 * 28 27 18 30 30 C 1.47932 * 125.73759 * 359.68661 * 12 10 9 31 31 H 1.08994 * 109.47305 * 90.02686 * 1 2 3 32 32 H 1.09001 * 109.46662 * 210.02631 * 1 2 3 33 33 H 1.09001 * 109.47224 * 330.01872 * 1 2 3 34 34 H 1.09004 * 109.46798 * 0.02562 * 6 5 4 35 35 H 1.08995 * 109.46979 * 120.02602 * 6 5 4 36 36 H 1.08996 * 109.47380 * 240.02697 * 6 5 4 37 37 H 1.08997 * 109.47216 * 29.97539 * 8 7 5 38 38 H 1.09007 * 109.47362 * 149.97429 * 8 7 5 39 39 H 1.09003 * 109.47343 * 299.99500 * 9 8 7 40 40 H 1.08996 * 109.47306 * 59.99973 * 9 8 7 41 41 H 1.08999 * 110.00139 * 298.37569 * 13 12 10 42 42 H 1.08998 * 110.00608 * 59.74184 * 13 12 10 43 43 H 1.09002 * 109.03797 * 290.43943 * 16 14 13 44 44 H 1.08995 * 109.04380 * 49.31770 * 16 14 13 45 45 H 1.08997 * 108.95420 * 199.97514 * 17 16 14 46 46 H 1.08998 * 108.01746 * 82.00632 * 17 16 14 47 47 H 0.96996 * 120.00056 * 179.97438 * 22 21 19 48 48 H 1.09001 * 108.10945 * 241.07309 * 27 18 17 49 49 H 1.08997 * 108.11810 * 124.62791 * 27 18 17 50 50 H 1.09006 * 110.56634 * 274.14605 * 30 12 10 51 51 H 1.08994 * 110.56949 * 37.00811 * 30 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0424 0.0000 4 8 3.4537 0.7255 0.0051 5 6 3.6025 -0.6067 0.0098 6 6 4.9022 -1.3694 0.0162 7 6 2.3541 -1.1320 0.0065 8 6 1.9592 -2.5863 0.0100 9 6 1.8309 -3.0834 -1.4313 10 6 1.4366 -4.5379 -1.4278 11 8 1.2747 -5.1198 -0.3761 12 7 1.2649 -5.1924 -2.5935 13 6 0.8813 -6.6081 -2.7374 14 6 0.7864 -6.8932 -4.2622 15 1 1.0853 -7.9091 -4.5207 16 6 -0.6533 -6.5847 -4.6747 17 6 -0.8080 -6.5680 -6.1856 18 7 0.3137 -5.9731 -6.8720 19 6 0.1715 -5.7821 -8.2205 20 1 0.7286 -5.0015 -8.7172 21 6 -0.6890 -6.5917 -8.9492 22 7 -0.9893 -7.7958 -8.5104 23 14 -1.4207 -5.9726 -10.5525 24 1 -0.5857 -6.4368 -11.6894 25 1 -2.8003 -6.5008 -10.7036 26 1 -1.4576 -4.4881 -10.5390 27 6 1.5661 -5.5588 -6.2948 28 6 1.7448 -5.8297 -4.8326 29 1 2.7736 -6.1384 -4.6474 30 6 1.4229 -4.6087 -3.9435 31 1 -0.3633 -0.0005 -1.0276 32 1 -0.3633 -0.8898 0.5143 33 1 -0.3634 0.8902 0.5135 34 1 5.7357 -0.6669 0.0170 35 1 4.9526 -1.9939 0.9081 36 1 4.9585 -1.9989 -0.8718 37 1 2.7209 -3.1684 0.5286 38 1 1.0031 -2.7021 0.5207 39 1 1.0690 -2.5014 -1.9499 40 1 2.7868 -2.9677 -1.9420 41 1 1.6392 -7.2476 -2.2849 42 1 -0.0851 -6.7826 -2.2646 43 1 -1.3153 -7.3364 -4.2447 44 1 -0.9318 -5.6044 -4.2879 45 1 -1.7108 -6.0141 -6.4429 46 1 -0.9205 -7.5979 -6.5243 47 1 -1.5908 -8.3614 -9.0193 48 1 1.6755 -4.4865 -6.4567 49 1 2.3700 -6.0608 -6.8332 50 1 0.4974 -4.1309 -4.2649 51 1 2.2480 -3.8966 -3.9587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088196295.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:37 Heat of formation + Delta-G solvation = 22.119201 kcal Electronic energy + Delta-G solvation = -31044.882325 eV Core-core repulsion = 26946.994706 eV Total energy + Delta-G solvation = -4097.887619 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -45.91050 -41.55173 -39.79872 -37.32318 -36.78040 -34.73486 -34.25520 -33.24129 -32.64502 -31.85934 -29.65200 -29.45937 -28.51933 -27.17857 -26.26225 -24.78612 -23.62019 -23.01483 -22.19976 -21.03118 -20.16788 -19.35887 -18.89190 -18.67351 -18.18633 -17.59755 -17.24522 -16.88838 -16.43742 -16.05461 -15.67267 -15.55885 -15.29696 -14.92215 -14.69361 -14.64512 -14.31418 -14.28592 -14.01589 -13.93886 -13.78636 -13.59842 -13.47724 -13.43708 -13.36978 -13.16651 -12.96594 -12.85394 -12.81074 -12.49738 -12.26442 -12.21117 -12.02830 -11.77992 -11.72280 -11.45745 -11.27535 -11.19354 -10.96566 -10.77137 -10.49625 -10.04972 -9.66568 -8.64335 -7.66796 -5.35832 0.50642 1.18969 1.46154 1.49629 1.58922 1.62515 1.97704 2.24541 2.52964 3.21273 3.24338 3.38004 3.50262 3.54960 3.75308 3.78783 3.82960 3.87788 4.04001 4.15835 4.25005 4.29229 4.37747 4.41579 4.48373 4.53688 4.61549 4.63476 4.67300 4.68705 4.70423 4.73722 4.78788 4.82988 4.93447 4.94928 5.00546 5.05700 5.06985 5.08651 5.10245 5.17944 5.24324 5.31732 5.35882 5.37612 5.45639 5.71885 5.97496 6.46408 6.52536 7.13272 7.24403 7.32704 8.08686 8.26113 9.14464 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014851 B = 0.002294 C = 0.002159 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.001576 B =12200.343311 C =12968.598995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.015 3.985 3 N -0.402 5.402 4 O 0.081 5.919 5 C -0.021 4.021 6 C -0.077 4.077 7 C -0.210 4.210 8 C -0.014 4.014 9 C -0.123 4.123 10 C 0.528 3.472 11 O -0.582 6.582 12 N -0.616 5.616 13 C 0.117 3.883 14 C -0.079 4.079 15 H 0.092 0.908 16 C -0.110 4.110 17 C 0.165 3.835 18 N -0.597 5.597 19 C -0.281 4.281 20 H 0.065 0.935 21 C -0.044 4.044 22 N -0.917 5.917 23 Si 0.956 3.044 24 H -0.285 1.285 25 H -0.293 1.293 26 H -0.272 1.272 27 C 0.173 3.827 28 C -0.095 4.095 29 H 0.097 0.903 30 C 0.115 3.885 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.116 0.884 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.053 0.947 45 H -0.011 1.011 46 H 0.045 0.955 47 H 0.249 0.751 48 H 0.025 0.975 49 H 0.010 0.990 50 H 0.066 0.934 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.593 10.750 18.188 23.203 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.143 4.143 3 N -0.111 5.111 4 O 0.020 5.980 5 C -0.085 4.085 6 C -0.134 4.134 7 C -0.214 4.214 8 C -0.052 4.052 9 C -0.162 4.162 10 C 0.319 3.681 11 O -0.463 6.463 12 N -0.349 5.349 13 C -0.005 4.005 14 C -0.098 4.098 15 H 0.110 0.890 16 C -0.148 4.148 17 C 0.039 3.961 18 N -0.321 5.321 19 C -0.411 4.411 20 H 0.083 0.917 21 C -0.241 4.241 22 N -0.563 5.563 23 Si 0.785 3.215 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.197 1.197 27 C 0.048 3.952 28 C -0.114 4.114 29 H 0.115 0.885 30 C -0.007 4.007 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.088 0.912 44 H 0.072 0.928 45 H 0.007 0.993 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.042 0.958 49 H 0.028 0.972 50 H 0.084 0.916 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 9.246 11.707 18.838 24.030 hybrid contribution -0.982 -0.722 -1.288 1.773 sum 8.265 10.985 17.550 22.293 Atomic orbital electron populations 1.20293 0.84748 1.04406 1.04231 1.23934 1.00004 0.88645 1.01719 1.73840 0.89906 1.25087 1.22236 1.84765 1.21342 1.23725 1.68212 1.24954 0.99538 0.83087 1.00884 1.20591 0.88475 0.98793 1.05514 1.21006 0.91768 0.97357 1.11272 1.19472 1.03255 0.87008 0.95461 1.21606 1.05161 0.90156 0.99323 1.20780 0.76142 0.89698 0.81453 1.90687 1.53693 1.70344 1.31545 1.48799 1.67997 1.11840 1.06287 1.22246 1.00379 0.82265 0.95656 1.21975 0.95329 0.99664 0.92830 0.88987 1.21565 0.96465 1.01091 0.95674 1.19994 0.87361 0.98741 0.89975 1.42907 1.12067 1.72365 1.04790 1.19434 1.24711 1.11303 0.85679 0.91718 1.25654 1.02756 0.94773 1.00954 1.70167 1.38149 1.07393 1.40549 0.85436 0.77501 0.78302 0.80287 1.21187 1.21984 1.19726 1.19346 0.87027 0.97231 0.91605 1.21555 1.00588 0.95487 0.93777 0.88513 1.22511 1.02346 0.95984 0.79862 0.89273 0.88879 0.90379 0.88575 0.87787 0.87617 0.89409 0.90536 0.87973 0.86632 0.90989 0.91797 0.91246 0.92783 0.99317 0.93796 0.94168 0.95756 0.97171 0.91562 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.39 71.24 0.74 -0.45 16 2 C 0.02 0.31 7.33 43.58 0.32 0.63 16 3 N -0.40 -9.50 12.07 -49.55 -0.60 -10.10 16 4 O 0.08 1.70 11.20 71.59 0.80 2.50 16 5 C -0.02 -0.33 7.49 25.04 0.19 -0.14 16 6 C -0.08 -0.54 10.23 71.24 0.73 0.18 16 7 C -0.21 -3.57 5.57 -19.74 -0.11 -3.68 16 8 C -0.01 -0.22 4.83 29.85 0.14 -0.07 16 9 C -0.12 -1.90 4.70 29.85 0.14 -1.76 16 10 C 0.53 12.09 7.85 87.66 0.69 12.78 16 11 O -0.58 -17.35 16.32 -3.05 -0.05 -17.40 16 12 N -0.62 -14.33 3.34 -808.34 -2.70 -17.03 16 13 C 0.12 2.96 6.25 87.04 0.54 3.51 16 14 C -0.08 -2.30 3.60 -9.62 -0.03 -2.34 16 15 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 16 C -0.11 -3.77 4.83 30.20 0.15 -3.62 16 17 C 0.16 7.62 5.07 86.41 0.44 8.05 16 18 N -0.60 -28.28 3.23 -721.85 -2.33 -30.62 16 19 C -0.28 -14.99 9.27 84.03 0.78 -14.21 16 20 H 0.07 3.39 7.94 -2.91 -0.02 3.36 16 21 C -0.04 -2.43 4.94 84.86 0.42 -2.01 16 22 N -0.92 -52.72 10.87 21.65 0.24 -52.48 16 23 Si 0.96 43.98 29.62 68.60 2.03 46.01 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 25 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C 0.17 6.44 5.75 85.81 0.49 6.93 16 28 C -0.09 -2.62 2.85 -10.97 -0.03 -2.65 16 29 H 0.10 2.31 8.14 -2.38 -0.02 2.29 16 30 C 0.12 2.56 5.48 86.59 0.47 3.03 16 31 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.09 1.17 7.65 -2.39 -0.02 1.16 16 33 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 1.34 8.03 -2.39 -0.02 1.32 16 38 H 0.08 1.35 7.61 -2.38 -0.02 1.33 16 39 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.12 1.31 7.87 -2.39 -0.02 1.29 16 41 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 1.69 7.78 -2.39 -0.02 1.67 16 43 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.05 1.77 6.68 -2.39 -0.02 1.75 16 45 H -0.01 -0.58 8.09 -2.39 -0.02 -0.60 16 46 H 0.04 2.39 5.80 -2.39 -0.01 2.37 16 47 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.02 0.87 7.81 -2.39 -0.02 0.85 16 49 H 0.01 0.41 8.13 -2.39 -0.02 0.39 16 50 H 0.07 1.66 7.22 -2.38 -0.02 1.65 16 51 H 0.11 1.73 7.51 -2.39 -0.02 1.71 16 Total: -1.00 -70.21 402.26 4.37 -65.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: 0.92 Total: 9.08 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.07 Total: 4.19 kcal Atomic # 7 Polarization: -104.83 SS G_CDS: -5.40 Total: -110.23 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: 0.75 Total: -14.89 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -70.21 4.37 -65.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088196295.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.961 kcal (2) G-P(sol) polarization free energy of solvation -70.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds