Wall clock time and date at job start Wed Apr 1 2020 04:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34866 * 119.10085 * 2 1 4 4 C 1.41675 * 119.33799 * 179.77729 * 3 2 1 5 5 O 1.22086 * 121.06503 * 180.21050 * 4 3 2 6 6 C 1.47102 * 117.86388 * 0.42350 * 4 3 2 7 7 C 1.47288 * 120.87935 * 179.81262 * 6 4 3 8 8 O 1.21615 * 119.99964 * 352.68861 * 7 6 4 9 9 N 1.34685 * 119.99910 * 172.68109 * 7 6 4 10 10 C 1.45344 * 121.27508 * 11.87843 * 9 7 6 11 11 C 1.51962 * 115.89871 * 279.07852 * 10 9 7 12 12 C 1.52324 * 113.38703 * 347.67131 * 11 10 9 13 13 C 1.52544 * 111.44119 * 275.07150 * 12 11 10 14 14 C 1.51575 * 112.34024 * 55.76157 * 13 12 11 15 15 C 1.53997 * 111.18516 * 64.93699 * 14 13 12 16 16 H 1.10359 * 107.47809 * 132.25134 * 15 14 13 17 17 N 1.44678 * 113.49192 * 11.91346 * 15 14 13 18 18 C 1.36933 * 120.00368 * 83.71769 * 17 15 14 19 19 H 1.08005 * 119.99817 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00151 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00209 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46901 * 90.00181 * 22 20 18 24 24 H 1.48503 * 109.47219 * 209.99926 * 22 20 18 25 25 H 1.48500 * 109.47046 * 329.99989 * 22 20 18 26 26 C 1.48415 * 120.01089 * 187.42307 * 9 7 6 27 27 C 1.37982 * 118.23576 * 359.54358 * 6 4 3 28 28 N 1.34351 * 120.37345 * 0.26771 * 27 6 4 29 29 C 1.46504 * 118.80823 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.46955 * 265.04992 * 1 2 3 31 31 H 1.09003 * 109.47105 * 25.04290 * 1 2 3 32 32 H 1.08994 * 109.47237 * 145.04512 * 1 2 3 33 33 H 1.07998 * 120.32994 * 0.02562 * 3 2 1 34 34 H 1.10134 * 108.24172 * 41.55898 * 10 9 7 35 35 H 1.10062 * 108.44302 * 156.26678 * 10 9 7 36 36 H 1.10073 * 109.17509 * 109.28444 * 11 10 9 37 37 H 1.09961 * 109.32972 * 225.70242 * 11 10 9 38 38 H 1.07935 * 111.98195 * 41.34850 * 12 11 10 39 39 H 1.10883 * 107.70845 * 157.57792 * 12 11 10 40 40 H 1.10039 * 108.42711 * 295.74585 * 13 12 11 41 41 H 1.09167 * 109.89524 * 178.98372 * 13 12 11 42 42 H 1.09052 * 110.16625 * 303.73183 * 14 13 12 43 43 H 1.09531 * 109.43033 * 184.76476 * 14 13 12 44 44 H 0.96999 * 119.99516 * 263.71348 * 17 15 14 45 45 H 0.96998 * 120.00440 * 180.02562 * 21 20 18 46 46 H 1.08743 * 109.26881 * 337.70053 * 26 9 7 47 47 H 1.08622 * 109.53885 * 216.21123 * 26 9 7 48 48 H 1.07998 * 119.81738 * 180.25684 * 27 6 4 49 49 H 1.08997 * 109.46988 * 95.56440 * 29 28 27 50 50 H 1.08992 * 109.47359 * 215.56778 * 29 28 27 51 51 H 1.09001 * 109.46841 * 335.56643 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0048 5 8 4.2052 2.2326 0.0088 6 6 4.2725 -0.1133 0.0000 7 6 5.7437 -0.1847 0.0004 8 8 6.4017 0.8298 -0.1293 9 7 6.3602 -1.3734 0.1446 10 6 5.6233 -2.6224 0.0464 11 6 4.8653 -3.0457 1.2936 12 6 5.2430 -2.2435 2.5321 13 6 6.4781 -2.8216 3.2158 14 6 7.6629 -2.9224 2.2757 15 6 8.1332 -1.5280 1.8218 16 1 9.2296 -1.4925 1.9425 17 7 7.5454 -0.4457 2.5808 18 6 8.0951 -0.0713 3.7778 19 1 8.9672 -0.5844 4.1555 20 6 7.5314 0.9675 4.5058 21 7 6.4689 1.5931 4.0453 22 14 8.2808 1.4776 6.1391 23 1 9.3057 2.5269 5.9072 24 1 7.2169 2.0124 7.0264 25 1 8.9156 0.2991 6.7820 26 6 7.8339 -1.4301 0.3105 27 6 3.5077 -1.2618 0.0008 28 7 2.1664 -1.1847 0.0004 29 6 1.3880 -2.4258 0.0007 30 1 -0.3633 -0.0887 1.0238 31 1 -0.3633 0.9311 -0.4350 32 1 -0.3633 -0.8422 -0.5887 33 1 1.6136 2.1083 0.0004 34 1 4.9114 -2.5378 -0.7897 35 1 6.3275 -3.4212 -0.2316 36 1 3.7847 -2.9373 1.1142 37 1 5.0487 -4.1127 1.4863 38 1 5.3575 -1.1927 2.3135 39 1 4.4022 -2.3172 3.2511 40 1 6.2333 -3.8303 3.5811 41 1 6.7366 -2.2182 4.0880 42 1 7.3980 -3.5145 1.3991 43 1 8.4935 -3.4193 2.7884 44 1 6.7620 0.0149 2.2417 45 1 6.0752 2.3192 4.5537 46 1 8.2755 -0.5214 -0.0919 47 1 8.2236 -2.3061 -0.2000 48 1 3.9899 -2.2281 0.0015 49 1 1.1103 -2.6803 1.0235 50 1 0.4869 -2.2897 -0.5973 51 1 1.9877 -3.2309 -0.4239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088330975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:43 Heat of formation + Delta-G solvation = 52.234121 kcal Electronic energy + Delta-G solvation = -34098.592996 eV Core-core repulsion = 30002.011258 eV Total energy + Delta-G solvation = -4096.581739 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.46312 -39.62382 -37.80836 -36.64824 -35.37120 -33.46968 -33.13637 -32.49069 -31.75010 -29.40407 -28.45006 -27.67063 -26.85164 -26.30613 -23.96230 -23.55240 -22.76812 -21.34272 -20.47601 -19.68289 -18.61300 -17.78353 -17.22172 -16.96268 -16.67431 -16.02440 -15.36241 -15.28973 -15.11156 -14.75426 -14.34156 -13.91443 -13.88045 -13.69370 -13.57415 -13.45383 -13.36396 -13.18654 -12.95772 -12.83068 -12.58577 -12.28410 -12.07262 -11.94027 -11.76583 -11.60700 -11.38582 -11.22475 -10.87234 -10.72784 -10.66172 -10.54669 -10.10331 -9.95947 -9.83668 -9.55690 -9.43282 -9.33399 -9.19030 -8.70727 -8.59704 -8.07627 -7.64097 -6.70922 -5.53843 -2.84174 1.15772 1.55418 2.46834 3.37453 3.54063 3.54777 3.58860 3.61094 4.15000 4.27340 4.33122 4.47149 4.58688 4.68558 4.73847 4.79024 4.92827 5.02814 5.03510 5.12567 5.18552 5.27599 5.34489 5.45438 5.53130 5.59204 5.59403 5.66378 5.72377 5.84459 5.87108 5.94539 5.98098 6.04518 6.18816 6.22756 6.36564 6.51029 6.57949 6.63543 6.72490 6.74329 6.82149 6.95358 6.99629 7.14366 7.28932 7.37436 7.88184 7.98559 8.62657 8.63800 8.96925 9.73360 10.39337 10.69591 11.66376 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.004798 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.295421 B = 5834.951438 C = 6688.352732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.145 3.855 3 C -0.268 4.268 4 C 0.405 3.595 5 O -0.470 6.470 6 C -0.286 4.286 7 C 0.577 3.423 8 O -0.491 6.491 9 N -0.607 5.607 10 C 0.095 3.905 11 C -0.156 4.156 12 C -0.103 4.103 13 C -0.088 4.088 14 C -0.139 4.139 15 C 0.165 3.835 16 H 0.041 0.959 17 N -0.702 5.702 18 C -0.242 4.242 19 H 0.067 0.933 20 C -0.008 4.008 21 N -0.916 5.916 22 Si 0.899 3.101 23 H -0.291 1.291 24 H -0.294 1.294 25 H -0.284 1.284 26 C 0.106 3.894 27 C 0.091 3.909 28 N -0.475 5.475 29 C 0.050 3.950 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.070 0.930 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.091 0.909 39 H 0.036 0.964 40 H 0.024 0.976 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.041 0.959 44 H 0.390 0.610 45 H 0.254 0.746 46 H 0.087 0.913 47 H 0.073 0.927 48 H 0.234 0.766 49 H 0.079 0.921 50 H 0.091 0.909 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.804 -17.070 -11.622 25.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.040 3.960 3 C -0.292 4.292 4 C 0.289 3.711 5 O -0.350 6.350 6 C -0.296 4.296 7 C 0.365 3.635 8 O -0.363 6.363 9 N -0.342 5.342 10 C -0.029 4.029 11 C -0.194 4.194 12 C -0.141 4.141 13 C -0.126 4.126 14 C -0.180 4.180 15 C 0.052 3.948 16 H 0.059 0.941 17 N -0.343 5.343 18 C -0.374 4.374 19 H 0.085 0.915 20 C -0.205 4.205 21 N -0.563 5.563 22 Si 0.731 3.269 23 H -0.218 1.218 24 H -0.220 1.220 25 H -0.210 1.210 26 C -0.016 4.016 27 C -0.036 4.036 28 N -0.163 5.163 29 C -0.091 4.091 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.165 0.835 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.092 0.908 38 H 0.109 0.891 39 H 0.055 0.945 40 H 0.042 0.958 41 H 0.101 0.899 42 H 0.062 0.938 43 H 0.060 0.940 44 H 0.227 0.773 45 H 0.064 0.936 46 H 0.105 0.895 47 H 0.091 0.909 48 H 0.249 0.751 49 H 0.098 0.902 50 H 0.109 0.891 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -14.146 -15.997 -11.514 24.260 hybrid contribution -0.097 0.212 1.116 1.140 sum -14.243 -15.785 -10.397 23.667 Atomic orbital electron populations 1.21144 0.88654 1.04506 1.03867 1.20212 0.94518 0.85474 0.95828 1.22267 0.96595 0.96951 1.13390 1.18159 0.88128 0.88171 0.76601 1.90843 1.69855 1.33214 1.41076 1.22492 0.94523 0.94973 1.17636 1.17361 0.86121 0.83001 0.76978 1.90886 1.65639 1.33365 1.46448 1.47726 1.08108 1.04306 1.74059 1.21553 0.96885 0.88195 0.96255 1.22452 0.98549 1.01518 0.96898 1.21219 0.97301 1.01769 0.93794 1.20920 0.94001 0.98048 0.99626 1.22431 0.97542 0.99755 0.98268 1.20677 0.96158 0.88679 0.89272 0.94090 1.41831 1.34802 1.35964 1.21739 1.19123 1.09054 1.13087 0.96101 0.91461 1.24747 0.98153 0.98899 0.98712 1.69714 1.22863 1.25102 1.38602 0.86319 0.78061 0.78339 0.84200 1.21835 1.22035 1.20982 1.22758 0.78623 1.02143 0.98094 1.25612 0.82132 1.04440 0.91367 1.42592 1.05519 1.06475 1.61757 1.22446 0.97634 0.84819 1.04219 0.89582 0.89225 0.90489 0.83528 0.91304 0.89767 0.92045 0.90834 0.89053 0.94490 0.95756 0.89882 0.93753 0.94040 0.77302 0.93623 0.89480 0.90859 0.75131 0.90211 0.89097 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 9.36 36.00 0.34 -0.40 16 2 C 0.15 1.59 6.64 -82.13 -0.55 1.04 16 3 C -0.27 -4.17 9.57 -39.47 -0.38 -4.55 16 4 C 0.40 8.69 6.96 -34.68 -0.24 8.45 16 5 O -0.47 -12.74 16.44 -14.99 -0.25 -12.98 16 6 C -0.29 -5.43 5.73 -102.72 -0.59 -6.02 16 7 C 0.58 12.47 5.21 -12.62 -0.07 12.40 16 8 O -0.49 -13.41 14.76 -14.57 -0.22 -13.62 16 9 N -0.61 -10.33 1.49 -195.80 -0.29 -10.62 16 10 C 0.10 1.09 4.08 -5.19 -0.02 1.07 16 11 C -0.16 -1.76 4.16 -27.60 -0.11 -1.87 16 12 C -0.10 -1.77 4.78 -27.31 -0.13 -1.90 16 13 C -0.09 -1.59 4.82 -27.69 -0.13 -1.73 16 14 C -0.14 -2.33 5.22 -26.93 -0.14 -2.47 16 15 C 0.17 3.37 2.76 -67.66 -0.19 3.19 16 16 H 0.04 0.86 8.16 -51.15 -0.42 0.44 16 17 N -0.70 -18.32 3.45 -52.85 -0.18 -18.50 16 18 C -0.24 -6.96 8.73 -15.06 -0.13 -7.10 16 19 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 20 C -0.01 -0.24 5.50 -17.43 -0.10 -0.34 16 21 N -0.92 -29.89 13.06 55.49 0.72 -29.16 16 22 Si 0.90 23.58 29.55 -169.99 -5.02 18.56 16 23 H -0.29 -7.71 7.11 56.52 0.40 -7.31 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 26 C 0.11 1.86 5.60 -2.27 -0.01 1.85 16 27 C 0.09 1.16 6.71 -16.54 -0.11 1.05 16 28 N -0.48 -4.63 2.97 -119.75 -0.36 -4.98 16 29 C 0.05 0.21 9.45 59.85 0.57 0.78 16 30 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.48 7.99 -51.93 -0.41 0.07 16 32 H 0.08 0.26 5.95 -51.93 -0.31 -0.05 16 33 H 0.15 2.06 8.02 -52.49 -0.42 1.64 16 34 H 0.07 0.62 5.64 -51.28 -0.29 0.33 16 35 H 0.08 0.76 6.76 -51.32 -0.35 0.41 16 36 H 0.06 0.55 4.85 -51.32 -0.25 0.30 16 37 H 0.07 0.67 8.06 -51.38 -0.41 0.26 16 38 H 0.09 2.02 3.93 -52.52 -0.21 1.82 16 39 H 0.04 0.63 8.29 -50.85 -0.42 0.20 16 40 H 0.02 0.37 8.23 -51.34 -0.42 -0.05 16 41 H 0.08 1.87 6.74 -51.83 -0.35 1.52 16 42 H 0.04 0.60 4.96 -51.90 -0.26 0.34 16 43 H 0.04 0.68 8.19 -51.63 -0.42 0.26 16 44 H 0.39 11.20 4.29 -40.82 -0.17 11.03 16 45 H 0.25 8.12 8.31 -40.82 -0.34 7.78 16 46 H 0.09 1.77 7.15 -52.07 -0.37 1.40 16 47 H 0.07 0.97 7.45 -52.14 -0.39 0.58 16 48 H 0.23 2.30 1.14 -85.15 -0.10 2.20 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 50 H 0.09 0.18 5.90 -51.93 -0.31 -0.12 16 51 H 0.09 0.19 7.84 -51.93 -0.41 -0.22 16 LS Contribution 370.27 15.07 5.58 5.58 Total: -1.00 -43.13 370.27 -9.08 -52.21 By element: Atomic # 1 Polarization: 17.16 SS G_CDS: -7.08 Total: 10.08 kcal Atomic # 6 Polarization: 5.45 SS G_CDS: -1.99 Total: 3.45 kcal Atomic # 7 Polarization: -63.17 SS G_CDS: -0.11 Total: -63.27 kcal Atomic # 8 Polarization: -26.14 SS G_CDS: -0.46 Total: -26.61 kcal Atomic # 14 Polarization: 23.58 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -43.13 -9.08 -52.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088330975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.444 kcal (2) G-P(sol) polarization free energy of solvation -43.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds