Wall clock time and date at job start Wed Apr 1 2020 04:24:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34866 * 119.10085 * 2 1 4 4 C 1.41675 * 119.33799 * 179.77729 * 3 2 1 5 5 O 1.22086 * 121.06503 * 180.21050 * 4 3 2 6 6 C 1.47102 * 117.86388 * 0.42350 * 4 3 2 7 7 C 1.47288 * 120.87935 * 179.81262 * 6 4 3 8 8 O 1.21615 * 119.99964 * 352.68861 * 7 6 4 9 9 N 1.34685 * 119.99910 * 172.68109 * 7 6 4 10 10 C 1.45344 * 121.27508 * 11.87843 * 9 7 6 11 11 C 1.51962 * 115.89871 * 279.07852 * 10 9 7 12 12 C 1.52324 * 113.38703 * 347.67131 * 11 10 9 13 13 C 1.52544 * 111.44119 * 275.07150 * 12 11 10 14 14 C 1.51575 * 112.34024 * 55.76157 * 13 12 11 15 15 C 1.53997 * 111.18516 * 64.93699 * 14 13 12 16 16 H 1.10359 * 107.47809 * 132.25134 * 15 14 13 17 17 N 1.44678 * 113.49192 * 11.91346 * 15 14 13 18 18 C 1.36933 * 120.00368 * 83.71769 * 17 15 14 19 19 H 1.08005 * 119.99817 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00151 * 179.97438 * 18 17 15 21 21 N 1.31618 * 120.00209 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99963 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46901 * 90.00181 * 22 20 18 24 24 H 1.48503 * 109.47219 * 209.99926 * 22 20 18 25 25 H 1.48500 * 109.47046 * 329.99989 * 22 20 18 26 26 C 1.48415 * 120.01089 * 187.42307 * 9 7 6 27 27 C 1.37982 * 118.23576 * 359.54358 * 6 4 3 28 28 N 1.34351 * 120.37345 * 0.26771 * 27 6 4 29 29 C 1.46504 * 118.80823 * 179.97438 * 28 27 6 30 30 H 1.08999 * 109.46955 * 265.04992 * 1 2 3 31 31 H 1.09003 * 109.47105 * 25.04290 * 1 2 3 32 32 H 1.08994 * 109.47237 * 145.04512 * 1 2 3 33 33 H 1.07998 * 120.32994 * 0.02562 * 3 2 1 34 34 H 1.10134 * 108.24172 * 41.55898 * 10 9 7 35 35 H 1.10062 * 108.44302 * 156.26678 * 10 9 7 36 36 H 1.10073 * 109.17509 * 109.28444 * 11 10 9 37 37 H 1.09961 * 109.32972 * 225.70242 * 11 10 9 38 38 H 1.07935 * 111.98195 * 41.34850 * 12 11 10 39 39 H 1.10883 * 107.70845 * 157.57792 * 12 11 10 40 40 H 1.10039 * 108.42711 * 295.74585 * 13 12 11 41 41 H 1.09167 * 109.89524 * 178.98372 * 13 12 11 42 42 H 1.09052 * 110.16625 * 303.73183 * 14 13 12 43 43 H 1.09531 * 109.43033 * 184.76476 * 14 13 12 44 44 H 0.96999 * 119.99516 * 263.71348 * 17 15 14 45 45 H 0.96998 * 120.00440 * 180.02562 * 21 20 18 46 46 H 1.08743 * 109.26881 * 337.70053 * 26 9 7 47 47 H 1.08622 * 109.53885 * 216.21123 * 26 9 7 48 48 H 1.07998 * 119.81738 * 180.25684 * 27 6 4 49 49 H 1.08997 * 109.46988 * 95.56440 * 29 28 27 50 50 H 1.08992 * 109.47359 * 215.56778 * 29 28 27 51 51 H 1.09001 * 109.46841 * 335.56643 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5796 1.1843 0.0048 5 8 4.2052 2.2326 0.0088 6 6 4.2725 -0.1133 0.0000 7 6 5.7437 -0.1847 0.0004 8 8 6.4017 0.8298 -0.1293 9 7 6.3602 -1.3734 0.1446 10 6 5.6233 -2.6224 0.0464 11 6 4.8653 -3.0457 1.2936 12 6 5.2430 -2.2435 2.5321 13 6 6.4781 -2.8216 3.2158 14 6 7.6629 -2.9224 2.2757 15 6 8.1332 -1.5280 1.8218 16 1 9.2296 -1.4925 1.9425 17 7 7.5454 -0.4457 2.5808 18 6 8.0951 -0.0713 3.7778 19 1 8.9672 -0.5844 4.1555 20 6 7.5314 0.9675 4.5058 21 7 6.4689 1.5931 4.0453 22 14 8.2808 1.4776 6.1391 23 1 9.3057 2.5269 5.9072 24 1 7.2169 2.0124 7.0264 25 1 8.9156 0.2991 6.7820 26 6 7.8339 -1.4301 0.3105 27 6 3.5077 -1.2618 0.0008 28 7 2.1664 -1.1847 0.0004 29 6 1.3880 -2.4258 0.0007 30 1 -0.3633 -0.0887 1.0238 31 1 -0.3633 0.9311 -0.4350 32 1 -0.3633 -0.8422 -0.5887 33 1 1.6136 2.1083 0.0004 34 1 4.9114 -2.5378 -0.7897 35 1 6.3275 -3.4212 -0.2316 36 1 3.7847 -2.9373 1.1142 37 1 5.0487 -4.1127 1.4863 38 1 5.3575 -1.1927 2.3135 39 1 4.4022 -2.3172 3.2511 40 1 6.2333 -3.8303 3.5811 41 1 6.7366 -2.2182 4.0880 42 1 7.3980 -3.5145 1.3991 43 1 8.4935 -3.4193 2.7884 44 1 6.7620 0.0149 2.2417 45 1 6.0752 2.3192 4.5537 46 1 8.2755 -0.5214 -0.0919 47 1 8.2236 -2.3061 -0.2000 48 1 3.9899 -2.2281 0.0015 49 1 1.1103 -2.6803 1.0235 50 1 0.4869 -2.2897 -0.5973 51 1 1.9877 -3.2309 -0.4239 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088330975.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:24:42 Heat of formation + Delta-G solvation = 18.907241 kcal Electronic energy + Delta-G solvation = -34100.038158 eV Core-core repulsion = 30002.011258 eV Total energy + Delta-G solvation = -4098.026901 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60240 -40.88571 -39.25424 -38.22480 -36.87427 -34.80532 -34.66204 -33.79028 -33.15539 -31.20638 -29.65143 -28.86302 -27.60994 -27.57109 -25.80205 -24.89036 -24.15082 -22.47265 -21.86025 -20.98591 -19.96697 -19.32840 -18.94763 -18.03558 -17.84918 -16.97870 -16.85667 -16.54807 -16.52368 -16.24220 -16.01523 -15.36438 -15.25185 -15.11014 -15.05856 -14.77195 -14.50306 -14.37206 -13.95241 -13.82984 -13.73834 -13.56455 -13.34613 -13.14497 -12.91268 -12.69719 -12.67444 -12.61781 -12.48180 -12.42004 -12.16340 -12.01800 -11.79850 -11.65621 -11.33022 -11.29264 -11.02115 -10.82173 -10.72392 -10.28338 -10.12458 -9.51519 -8.94423 -8.82496 -7.85985 -5.14211 -0.06617 0.42602 1.37149 1.42354 1.49627 1.59630 1.97870 2.18010 2.56059 2.90617 3.32056 3.44255 3.56712 3.67481 3.70377 3.85435 3.99708 4.00012 4.14978 4.18216 4.23412 4.29139 4.39552 4.44901 4.48008 4.53009 4.56069 4.69890 4.73956 4.75113 4.77047 4.82639 4.84360 4.90194 4.91535 5.03553 5.10215 5.15781 5.19947 5.23758 5.38631 5.41481 5.52647 5.63184 5.73305 5.82670 5.84597 5.87416 5.97149 6.33426 6.65566 7.22890 7.38069 7.51838 8.32395 8.45338 9.35823 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011103 B = 0.004798 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2521.295421 B = 5834.951438 C = 6688.352732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.186 3.814 3 C -0.319 4.319 4 C 0.370 3.630 5 O -0.575 6.575 6 C -0.348 4.348 7 C 0.568 3.432 8 O -0.579 6.579 9 N -0.597 5.597 10 C 0.068 3.932 11 C -0.153 4.153 12 C -0.104 4.104 13 C -0.088 4.088 14 C -0.123 4.123 15 C 0.145 3.855 16 H 0.028 0.972 17 N -0.717 5.717 18 C -0.225 4.225 19 H 0.075 0.925 20 C -0.084 4.084 21 N -0.967 5.967 22 Si 0.967 3.033 23 H -0.296 1.296 24 H -0.300 1.300 25 H -0.260 1.260 26 C 0.110 3.890 27 C 0.141 3.859 28 N -0.458 5.458 29 C 0.026 3.974 30 H 0.105 0.895 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.144 0.856 34 H 0.106 0.894 35 H 0.134 0.866 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.034 0.966 39 H 0.028 0.972 40 H 0.062 0.938 41 H 0.021 0.979 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.376 0.624 45 H 0.240 0.760 46 H 0.041 0.959 47 H 0.136 0.864 48 H 0.274 0.726 49 H 0.101 0.899 50 H 0.125 0.875 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.942 -25.175 -12.735 33.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.078 3.922 3 C -0.343 4.343 4 C 0.264 3.736 5 O -0.465 6.465 6 C -0.358 4.358 7 C 0.359 3.641 8 O -0.458 6.458 9 N -0.330 5.330 10 C -0.054 4.054 11 C -0.190 4.190 12 C -0.142 4.142 13 C -0.125 4.125 14 C -0.164 4.164 15 C 0.034 3.966 16 H 0.046 0.954 17 N -0.357 5.357 18 C -0.357 4.357 19 H 0.093 0.907 20 C -0.276 4.276 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.224 1.224 24 H -0.227 1.227 25 H -0.185 1.185 26 C -0.012 4.012 27 C 0.011 3.989 28 N -0.142 5.142 29 C -0.112 4.112 30 H 0.124 0.876 31 H 0.113 0.887 32 H 0.140 0.860 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.152 0.848 36 H 0.110 0.890 37 H 0.142 0.858 38 H 0.053 0.947 39 H 0.047 0.953 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.115 0.885 43 H 0.067 0.933 44 H 0.211 0.789 45 H 0.049 0.951 46 H 0.060 0.940 47 H 0.153 0.847 48 H 0.288 0.712 49 H 0.120 0.880 50 H 0.143 0.857 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -17.321 -24.303 -12.638 32.409 hybrid contribution 0.744 2.421 1.418 2.903 sum -16.577 -21.882 -11.220 29.656 Atomic orbital electron populations 1.21391 0.83705 1.06932 1.05900 1.20874 0.97165 0.84270 0.89937 1.22090 0.94081 0.99633 1.18488 1.19194 0.90696 0.88402 0.75350 1.90766 1.72015 1.36072 1.47614 1.22207 0.93967 0.96100 1.23574 1.17927 0.87268 0.83247 0.75660 1.90818 1.67498 1.36671 1.50836 1.47668 1.07985 1.05062 1.72296 1.22152 0.99006 0.86569 0.97673 1.22433 1.00203 1.03005 0.93389 1.21120 0.96752 0.99622 0.96724 1.20862 0.94941 0.98786 0.97957 1.22229 0.97250 0.96851 1.00029 1.21093 0.95238 0.89407 0.90820 0.95363 1.42036 1.34556 1.37683 1.21429 1.19557 1.07959 1.11600 0.96570 0.90721 1.25583 0.99222 0.99990 1.02783 1.69977 1.25404 1.26166 1.40227 0.85216 0.76758 0.78245 0.80072 1.22417 1.22712 1.18479 1.22725 0.79562 1.02716 0.96215 1.26124 0.83112 1.03444 0.86252 1.43380 1.05175 1.08622 1.57048 1.23208 0.98895 0.82271 1.06858 0.87628 0.88698 0.85954 0.83779 0.87678 0.84813 0.89027 0.85771 0.94715 0.95264 0.91895 0.96027 0.88527 0.93338 0.78936 0.95108 0.94014 0.84668 0.71203 0.88036 0.85657 0.85466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 9.36 71.23 0.67 -0.15 16 2 C 0.19 3.60 6.64 41.20 0.27 3.87 16 3 C -0.32 -10.81 9.57 22.34 0.21 -10.60 16 4 C 0.37 18.03 6.96 25.45 0.18 18.20 16 5 O -0.58 -36.69 16.44 13.37 0.22 -36.47 16 6 C -0.35 -14.07 5.73 -18.63 -0.11 -14.17 16 7 C 0.57 26.56 5.21 86.64 0.45 27.01 16 8 O -0.58 -36.03 14.76 14.89 0.22 -35.81 16 9 N -0.60 -19.88 1.49 -891.67 -1.33 -21.22 16 10 C 0.07 1.13 4.08 86.25 0.35 1.48 16 11 C -0.15 -2.38 4.16 30.03 0.12 -2.25 16 12 C -0.10 -3.35 4.78 30.22 0.14 -3.21 16 13 C -0.09 -2.96 4.82 29.98 0.14 -2.81 16 14 C -0.12 -3.70 5.22 30.46 0.16 -3.54 16 15 C 0.15 5.97 2.76 46.14 0.13 6.10 16 16 H 0.03 1.21 8.16 -1.66 -0.01 1.20 16 17 N -0.72 -39.92 3.45 -321.12 -1.11 -41.03 16 18 C -0.22 -13.68 8.73 84.03 0.73 -12.94 16 19 H 0.07 4.31 7.83 -2.91 -0.02 4.29 16 20 C -0.08 -5.43 5.50 84.86 0.47 -4.96 16 21 N -0.97 -69.14 13.06 21.65 0.28 -68.86 16 22 Si 0.97 51.69 29.55 68.60 2.03 53.72 16 23 H -0.30 -15.91 7.11 99.48 0.71 -15.20 16 24 H -0.30 -16.16 7.11 99.48 0.71 -15.46 16 25 H -0.26 -12.69 7.11 99.48 0.71 -11.99 16 26 C 0.11 3.84 5.60 86.48 0.48 4.33 16 27 C 0.14 3.15 6.71 84.25 0.57 3.71 16 28 N -0.46 -6.65 2.97 -532.78 -1.58 -8.23 16 29 C 0.03 -0.01 9.45 127.77 1.21 1.19 16 30 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.09 0.68 7.99 -2.39 -0.02 0.66 16 32 H 0.12 -0.19 5.95 -2.39 -0.01 -0.21 16 33 H 0.14 4.65 8.02 -2.91 -0.02 4.63 16 34 H 0.11 1.10 5.64 -1.78 -0.01 1.09 16 35 H 0.13 1.11 6.76 -1.82 -0.01 1.09 16 36 H 0.09 0.86 4.85 -1.81 -0.01 0.85 16 37 H 0.12 0.94 8.06 -1.87 -0.02 0.92 16 38 H 0.03 1.58 3.93 -2.94 -0.01 1.56 16 39 H 0.03 0.94 8.29 -1.37 -0.01 0.93 16 40 H 0.06 1.64 8.23 -1.83 -0.02 1.62 16 41 H 0.02 0.97 6.74 -2.30 -0.02 0.95 16 42 H 0.10 1.90 4.96 -2.36 -0.01 1.89 16 43 H 0.05 1.40 8.19 -2.10 -0.02 1.39 16 44 H 0.38 23.63 4.29 -92.71 -0.40 23.23 16 45 H 0.24 16.96 8.31 -92.71 -0.77 16.19 16 46 H 0.04 1.83 7.15 -2.52 -0.02 1.81 16 47 H 0.14 2.96 7.45 -2.59 -0.02 2.94 16 48 H 0.27 3.64 1.14 -33.59 -0.04 3.60 16 49 H 0.10 -0.24 8.14 -2.39 -0.02 -0.26 16 50 H 0.13 -0.75 5.90 -2.39 -0.01 -0.76 16 51 H 0.13 -0.84 7.84 -2.39 -0.02 -0.86 16 Total: -1.00 -125.51 370.27 5.50 -120.01 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.58 Total: 26.62 kcal Atomic # 6 Polarization: 5.07 SS G_CDS: 6.19 Total: 11.26 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -3.74 Total: -139.33 kcal Atomic # 8 Polarization: -72.72 SS G_CDS: 0.44 Total: -72.28 kcal Atomic # 14 Polarization: 51.69 SS G_CDS: 2.03 Total: 53.72 kcal Total: -125.51 5.50 -120.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088330975.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.920 kcal (2) G-P(sol) polarization free energy of solvation -125.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -120.013 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds