Wall clock time and date at job start Wed Apr 1 2020 04:29:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30011 * 127.33197 * 2 1 4 4 O 1.20664 * 112.29687 * 180.02562 * 3 2 1 5 5 C 1.33488 * 113.15972 * 359.70947 * 4 3 2 6 6 C 1.50698 * 126.83090 * 180.32983 * 5 4 3 7 7 C 1.53001 * 117.49889 * 8.77340 * 6 5 4 8 8 C 1.53000 * 117.50040 * 300.15037 * 6 5 4 9 9 C 1.37359 * 106.33923 * 0.45954 * 5 4 3 10 10 C 1.47406 * 128.56389 * 179.85456 * 9 5 4 11 11 O 1.21610 * 119.99834 * 269.69582 * 10 9 5 12 12 N 1.34773 * 119.99883 * 89.42485 * 10 9 5 13 13 C 1.45337 * 120.36821 * 359.97438 * 12 10 9 14 14 C 1.53443 * 108.41252 * 136.65897 * 13 12 10 15 15 C 1.52881 * 109.38832 * 282.28083 * 14 13 12 16 16 C 1.53947 * 109.72874 * 72.89867 * 15 14 13 17 17 C 1.52449 * 110.73355 * 44.36539 * 16 15 14 18 18 C 1.53805 * 109.40274 * 246.27327 * 17 16 15 19 19 H 1.08997 * 109.52168 * 317.86340 * 18 17 16 20 20 N 1.46504 * 109.51958 * 197.73646 * 18 17 16 21 21 C 1.36939 * 119.99423 * 154.99763 * 20 18 17 22 22 H 1.07998 * 120.00213 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99845 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99867 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00283 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46884 * 60.00042 * 25 23 21 27 27 H 1.48505 * 109.47334 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47213 * 300.00338 * 25 23 21 29 29 C 1.46966 * 120.36463 * 179.72527 * 12 10 9 30 30 H 1.09000 * 109.47146 * 269.97632 * 1 2 3 31 31 H 1.08994 * 109.47779 * 29.97440 * 1 2 3 32 32 H 1.09001 * 109.47402 * 149.97529 * 1 2 3 33 33 H 1.09007 * 115.55158 * 154.48272 * 6 5 4 34 34 H 1.08993 * 117.49737 * 0.02562 * 7 6 5 35 35 H 1.08997 * 117.49422 * 145.02278 * 7 6 5 36 36 H 1.08997 * 117.50402 * 214.98049 * 8 6 5 37 37 H 1.08996 * 117.49797 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.67895 * 256.39387 * 13 12 10 39 39 H 1.09004 * 109.67164 * 16.93274 * 13 12 10 40 40 H 1.08996 * 109.48422 * 42.25865 * 14 13 12 41 41 H 1.09005 * 109.48545 * 162.28940 * 14 13 12 42 42 H 1.08993 * 109.42697 * 192.97831 * 15 14 13 43 43 H 1.08998 * 109.42798 * 312.81598 * 15 14 13 44 44 H 1.08999 * 109.22499 * 164.68874 * 16 15 14 45 45 H 1.09006 * 109.22525 * 284.08739 * 16 15 14 46 46 H 1.08998 * 109.48304 * 6.25000 * 17 16 15 47 47 H 1.08995 * 109.48085 * 126.28127 * 17 16 15 48 48 H 0.96991 * 120.00001 * 335.00060 * 20 18 17 49 49 H 0.97003 * 119.99739 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.53082 * 51.52393 * 29 12 10 51 51 H 1.09005 * 109.53341 * 171.74968 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0053 6 6 4.9711 -1.3245 0.0134 7 6 6.2342 -0.4866 0.2223 8 6 5.9229 -1.0704 -1.1573 9 6 2.3991 -1.1696 -0.0006 10 6 2.0401 -2.5992 -0.0007 11 8 1.8920 -3.1888 -1.0540 12 7 1.8812 -3.2542 1.1663 13 6 2.0625 -2.5590 2.4297 14 6 0.9319 -2.9766 3.3793 15 6 -0.3487 -2.2313 3.0025 16 6 -0.9212 -2.8097 1.6958 17 6 -0.8872 -4.3336 1.7195 18 6 0.1004 -4.8393 0.6544 19 1 -0.0211 -4.2586 -0.2599 20 7 -0.1627 -6.2532 0.3750 21 6 0.1930 -6.7899 -0.8336 22 1 0.6678 -6.1710 -1.5806 23 6 -0.0567 -8.1293 -1.0987 24 7 -0.6358 -8.8835 -0.1885 25 14 0.4291 -8.8617 -2.7471 26 1 1.8958 -8.7259 -2.9360 27 1 0.0562 -10.2988 -2.7795 28 1 -0.2790 -8.1424 -3.8363 29 6 1.5174 -4.6781 1.1756 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.9555 -2.3272 0.4408 34 1 6.1090 0.5880 0.3543 35 1 7.0497 -0.9379 0.7874 36 1 6.5337 -1.9057 -1.4998 37 1 5.5929 -0.3801 -1.9335 38 1 3.0250 -2.8305 2.8632 39 1 2.0243 -1.4822 2.2647 40 1 0.7654 -4.0506 3.2962 41 1 1.2083 -2.7298 4.4045 42 1 -1.0820 -2.3441 3.8009 43 1 -0.1250 -1.1736 2.8636 44 1 -1.9518 -2.4755 1.5766 45 1 -0.3281 -2.4512 0.8544 46 1 -0.5665 -4.6748 2.7038 47 1 -1.8828 -4.7227 1.5064 48 1 -0.5888 -6.8091 1.0459 49 1 -0.8100 -9.8196 -0.3737 50 1 2.2009 -5.2331 0.5330 51 1 1.5785 -5.0633 2.1935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088348455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:30 Heat of formation + Delta-G solvation = 71.535919 kcal Electronic energy + Delta-G solvation = -33007.248120 eV Core-core repulsion = 28911.503371 eV Total energy + Delta-G solvation = -4095.744750 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.98995 -40.28281 -37.76238 -37.40730 -35.13929 -34.54151 -33.91228 -32.15488 -31.74500 -29.68810 -28.92456 -27.73653 -26.30867 -24.80050 -23.81421 -23.38166 -22.75761 -22.57972 -20.89708 -20.07622 -19.68946 -18.95989 -17.90550 -17.47422 -17.04922 -16.65720 -16.19265 -15.88542 -15.62312 -14.98454 -14.49961 -14.36779 -13.98931 -13.77859 -13.63573 -13.49573 -13.43148 -13.22751 -13.02866 -12.72331 -12.59524 -12.27949 -12.19588 -11.93297 -11.88520 -11.60555 -11.53264 -11.35670 -11.07970 -10.94667 -10.79194 -10.76711 -10.69459 -10.47612 -10.26592 -10.15490 -10.04507 -9.92814 -9.60799 -9.55518 -9.23040 -8.98678 -8.28613 -6.91919 -5.71558 -3.00160 1.13761 1.80984 2.54365 2.68916 3.24327 3.44595 3.50527 3.53566 3.56902 3.93642 4.02227 4.40340 4.51027 4.56090 4.61288 4.69021 4.73657 4.91972 5.03408 5.10751 5.21525 5.24919 5.30160 5.30278 5.33535 5.38535 5.41463 5.46569 5.58266 5.61104 5.63497 5.67734 5.73753 5.74823 5.79889 5.84720 5.91063 5.94960 6.04517 6.11493 6.15436 6.35658 6.43903 6.47369 6.65464 6.69597 6.86689 7.15849 7.60295 7.85439 8.09747 8.34538 8.47881 9.59180 10.13463 10.49019 11.50929 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.003865 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.191287 B = 7243.621310 C = 8547.177800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.056 3.944 3 N -0.357 5.357 4 O 0.093 5.907 5 C 0.040 3.960 6 C -0.091 4.091 7 C -0.162 4.162 8 C -0.156 4.156 9 C -0.228 4.228 10 C 0.590 3.410 11 O -0.508 6.508 12 N -0.591 5.591 13 C 0.109 3.891 14 C -0.150 4.150 15 C -0.114 4.114 16 C -0.121 4.121 17 C -0.131 4.131 18 C 0.164 3.836 19 H 0.062 0.938 20 N -0.718 5.718 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.013 4.013 24 N -0.936 5.936 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.286 1.286 29 C 0.099 3.901 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.138 0.862 34 H 0.105 0.895 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.101 0.899 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.064 0.936 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.077 0.923 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.984 19.748 8.370 23.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.106 4.106 3 N -0.064 5.064 4 O 0.032 5.968 5 C -0.023 4.023 6 C -0.110 4.110 7 C -0.199 4.199 8 C -0.193 4.193 9 C -0.236 4.236 10 C 0.374 3.626 11 O -0.382 6.382 12 N -0.324 5.324 13 C -0.014 4.014 14 C -0.188 4.188 15 C -0.151 4.151 16 C -0.159 4.159 17 C -0.169 4.169 18 C 0.053 3.947 19 H 0.080 0.920 20 N -0.359 5.359 21 C -0.365 4.365 22 H 0.092 0.908 23 C -0.209 4.209 24 N -0.585 5.585 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.213 1.213 29 C -0.025 4.025 30 H 0.105 0.895 31 H 0.100 0.900 32 H 0.107 0.893 33 H 0.156 0.844 34 H 0.123 0.877 35 H 0.126 0.874 36 H 0.128 0.872 37 H 0.120 0.880 38 H 0.080 0.920 39 H 0.092 0.908 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.083 0.917 48 H 0.217 0.783 49 H 0.064 0.936 50 H 0.095 0.905 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.750 20.659 7.614 23.693 hybrid contribution 0.022 -1.414 -0.560 1.521 sum 8.772 19.245 7.054 22.295 Atomic orbital electron populations 1.20353 0.85180 1.04468 1.03877 1.24719 0.98532 0.86488 1.00884 1.73610 0.89036 1.23254 1.20524 1.84474 1.21556 1.22403 1.68370 1.23461 0.95525 0.83396 0.99911 1.20476 0.83960 0.99377 1.07176 1.23091 0.96904 1.00174 0.99754 1.23115 1.00597 1.03865 0.91709 1.21973 0.92292 0.95827 1.13471 1.16863 0.77955 0.83624 0.84140 1.90907 1.49256 1.67303 1.30758 1.47875 1.68014 1.11802 1.04753 1.21540 0.98258 0.97072 0.84563 1.22330 0.94951 1.03183 0.98291 1.21730 0.96707 0.98739 0.97965 1.21769 1.00176 0.96349 0.97599 1.22101 1.00728 0.94389 0.99656 1.20601 0.90416 0.87758 0.95921 0.92020 1.42381 1.71905 1.04722 1.16875 1.19308 1.32030 0.92971 0.92183 0.90807 1.24712 1.01637 0.96505 0.98005 1.69656 1.48414 1.06569 1.33865 0.86289 0.78255 0.77899 0.83925 1.21278 1.21812 1.21264 1.22617 1.00501 0.77576 1.01816 0.89497 0.90002 0.89342 0.84396 0.87705 0.87415 0.87193 0.88026 0.92050 0.90817 0.89007 0.91272 0.92112 0.92615 0.92716 0.91750 0.91826 0.91712 0.78282 0.93597 0.90454 0.90593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 9.67 36.00 0.35 -0.53 16 2 C 0.06 0.73 7.45 -79.77 -0.59 0.14 16 3 N -0.36 -4.76 12.01 34.78 0.42 -4.34 16 4 O 0.09 1.16 10.86 18.66 0.20 1.36 16 5 C 0.04 0.49 7.00 -34.63 -0.24 0.25 16 6 C -0.09 -0.88 6.15 -91.77 -0.56 -1.45 16 7 C -0.16 -1.13 10.18 -26.73 -0.27 -1.41 16 8 C -0.16 -1.29 10.23 -26.73 -0.27 -1.56 16 9 C -0.23 -3.20 4.26 -102.89 -0.44 -3.64 16 10 C 0.59 9.70 5.97 -12.53 -0.07 9.62 16 11 O -0.51 -10.79 15.86 5.27 0.08 -10.71 16 12 N -0.59 -8.56 1.69 -175.93 -0.30 -8.86 16 13 C 0.11 1.20 5.90 -4.44 -0.03 1.18 16 14 C -0.15 -1.53 5.45 -26.56 -0.14 -1.68 16 15 C -0.11 -1.18 5.75 -26.30 -0.15 -1.33 16 16 C -0.12 -1.57 5.40 -26.52 -0.14 -1.72 16 17 C -0.13 -2.09 4.97 -26.59 -0.13 -2.22 16 18 C 0.16 3.26 2.38 -68.10 -0.16 3.10 16 19 H 0.06 1.40 6.15 -51.93 -0.32 1.08 16 20 N -0.72 -17.89 5.12 -53.59 -0.27 -18.17 16 21 C -0.23 -6.62 9.89 -15.06 -0.15 -6.77 16 22 H 0.07 2.15 7.83 -52.49 -0.41 1.74 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 24 N -0.94 -28.27 13.06 55.49 0.72 -27.55 16 25 Si 0.91 23.10 29.55 -169.99 -5.02 18.08 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 28 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 29 C 0.10 1.72 4.72 -4.38 -0.02 1.70 16 30 H 0.09 0.80 7.36 -51.93 -0.38 0.42 16 31 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.09 1.06 7.25 -51.93 -0.38 0.68 16 33 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.10 0.71 8.02 -51.93 -0.42 0.29 16 35 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.11 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.79 6.05 -51.93 -0.31 0.48 16 40 H 0.09 1.08 3.35 -51.93 -0.17 0.91 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.53 7.08 -51.93 -0.37 0.16 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.92 3.54 -51.93 -0.18 0.73 16 46 H 0.06 0.94 5.47 -51.93 -0.28 0.65 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.38 9.99 7.80 -40.82 -0.32 9.67 16 49 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 50 H 0.08 1.61 8.05 -51.93 -0.42 1.19 16 51 H 0.08 1.20 6.06 -51.93 -0.31 0.88 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -33.06 394.10 -9.01 -42.06 By element: Atomic # 1 Polarization: 16.62 SS G_CDS: -7.64 Total: 8.98 kcal Atomic # 6 Polarization: -3.66 SS G_CDS: -3.14 Total: -6.80 kcal Atomic # 7 Polarization: -59.48 SS G_CDS: 0.57 Total: -58.91 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.29 Total: -9.35 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.06 -9.01 -42.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088348455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.600 kcal (2) G-P(sol) polarization free energy of solvation -33.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds