Wall clock time and date at job start Wed Apr 1 2020 04:29:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30011 * 127.33197 * 2 1 4 4 O 1.20664 * 112.29687 * 180.02562 * 3 2 1 5 5 C 1.33488 * 113.15972 * 359.70947 * 4 3 2 6 6 C 1.50698 * 126.83090 * 180.32983 * 5 4 3 7 7 C 1.53001 * 117.49889 * 8.77340 * 6 5 4 8 8 C 1.53000 * 117.50040 * 300.15037 * 6 5 4 9 9 C 1.37359 * 106.33923 * 0.45954 * 5 4 3 10 10 C 1.47406 * 128.56389 * 179.85456 * 9 5 4 11 11 O 1.21610 * 119.99834 * 269.69582 * 10 9 5 12 12 N 1.34773 * 119.99883 * 89.42485 * 10 9 5 13 13 C 1.45337 * 120.36821 * 359.97438 * 12 10 9 14 14 C 1.53443 * 108.41252 * 136.65897 * 13 12 10 15 15 C 1.52881 * 109.38832 * 282.28083 * 14 13 12 16 16 C 1.53947 * 109.72874 * 72.89867 * 15 14 13 17 17 C 1.52449 * 110.73355 * 44.36539 * 16 15 14 18 18 C 1.53805 * 109.40274 * 246.27327 * 17 16 15 19 19 H 1.08997 * 109.52168 * 317.86340 * 18 17 16 20 20 N 1.46504 * 109.51958 * 197.73646 * 18 17 16 21 21 C 1.36939 * 119.99423 * 154.99763 * 20 18 17 22 22 H 1.07998 * 120.00213 * 0.02562 * 21 20 18 23 23 C 1.38811 * 119.99845 * 180.02562 * 21 20 18 24 24 N 1.31625 * 119.99867 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00283 * 180.02562 * 23 21 20 26 26 H 1.48506 * 109.46884 * 60.00042 * 25 23 21 27 27 H 1.48505 * 109.47334 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47213 * 300.00338 * 25 23 21 29 29 C 1.46966 * 120.36463 * 179.72527 * 12 10 9 30 30 H 1.09000 * 109.47146 * 269.97632 * 1 2 3 31 31 H 1.08994 * 109.47779 * 29.97440 * 1 2 3 32 32 H 1.09001 * 109.47402 * 149.97529 * 1 2 3 33 33 H 1.09007 * 115.55158 * 154.48272 * 6 5 4 34 34 H 1.08993 * 117.49737 * 0.02562 * 7 6 5 35 35 H 1.08997 * 117.49422 * 145.02278 * 7 6 5 36 36 H 1.08997 * 117.50402 * 214.98049 * 8 6 5 37 37 H 1.08996 * 117.49797 * 359.97438 * 8 6 5 38 38 H 1.09000 * 109.67895 * 256.39387 * 13 12 10 39 39 H 1.09004 * 109.67164 * 16.93274 * 13 12 10 40 40 H 1.08996 * 109.48422 * 42.25865 * 14 13 12 41 41 H 1.09005 * 109.48545 * 162.28940 * 14 13 12 42 42 H 1.08993 * 109.42697 * 192.97831 * 15 14 13 43 43 H 1.08998 * 109.42798 * 312.81598 * 15 14 13 44 44 H 1.08999 * 109.22499 * 164.68874 * 16 15 14 45 45 H 1.09006 * 109.22525 * 284.08739 * 16 15 14 46 46 H 1.08998 * 109.48304 * 6.25000 * 17 16 15 47 47 H 1.08995 * 109.48085 * 126.28127 * 17 16 15 48 48 H 0.96991 * 120.00001 * 335.00060 * 20 18 17 49 49 H 0.97003 * 119.99739 * 180.02562 * 24 23 21 50 50 H 1.08999 * 109.53082 * 51.52393 * 29 12 10 51 51 H 1.09005 * 109.53341 * 171.74968 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2954 1.0338 0.0000 4 8 3.4607 0.7208 -0.0005 5 6 3.6494 -0.6007 0.0053 6 6 4.9711 -1.3245 0.0134 7 6 6.2342 -0.4866 0.2223 8 6 5.9229 -1.0704 -1.1573 9 6 2.3991 -1.1696 -0.0006 10 6 2.0401 -2.5992 -0.0007 11 8 1.8920 -3.1888 -1.0540 12 7 1.8812 -3.2542 1.1663 13 6 2.0625 -2.5590 2.4297 14 6 0.9319 -2.9766 3.3793 15 6 -0.3487 -2.2313 3.0025 16 6 -0.9212 -2.8097 1.6958 17 6 -0.8872 -4.3336 1.7195 18 6 0.1004 -4.8393 0.6544 19 1 -0.0211 -4.2586 -0.2599 20 7 -0.1627 -6.2532 0.3750 21 6 0.1930 -6.7899 -0.8336 22 1 0.6678 -6.1710 -1.5806 23 6 -0.0567 -8.1293 -1.0987 24 7 -0.6358 -8.8835 -0.1885 25 14 0.4291 -8.8617 -2.7471 26 1 1.8958 -8.7259 -2.9360 27 1 0.0562 -10.2988 -2.7795 28 1 -0.2790 -8.1424 -3.8363 29 6 1.5174 -4.6781 1.1756 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3634 0.8901 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 4.9555 -2.3272 0.4408 34 1 6.1090 0.5880 0.3543 35 1 7.0497 -0.9379 0.7874 36 1 6.5337 -1.9057 -1.4998 37 1 5.5929 -0.3801 -1.9335 38 1 3.0250 -2.8305 2.8632 39 1 2.0243 -1.4822 2.2647 40 1 0.7654 -4.0506 3.2962 41 1 1.2083 -2.7298 4.4045 42 1 -1.0820 -2.3441 3.8009 43 1 -0.1250 -1.1736 2.8636 44 1 -1.9518 -2.4755 1.5766 45 1 -0.3281 -2.4512 0.8544 46 1 -0.5665 -4.6748 2.7038 47 1 -1.8828 -4.7227 1.5064 48 1 -0.5888 -6.8091 1.0459 49 1 -0.8100 -9.8196 -0.3737 50 1 2.2009 -5.2331 0.5330 51 1 1.5785 -5.0633 2.1935 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088348455.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:29 Heat of formation + Delta-G solvation = 52.447213 kcal Electronic energy + Delta-G solvation = -33008.075869 eV Core-core repulsion = 28911.503371 eV Total energy + Delta-G solvation = -4096.572498 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -45.99495 -41.55952 -38.86256 -38.34088 -36.73281 -35.63461 -35.16460 -33.92306 -32.78921 -31.31582 -29.85757 -29.16208 -27.49668 -26.16283 -25.21128 -24.55802 -23.75337 -23.32312 -22.38570 -21.15631 -20.71840 -20.08574 -19.11465 -18.94226 -18.54223 -17.64116 -17.38564 -17.13708 -16.83098 -16.24010 -16.02368 -15.47444 -15.36261 -15.19933 -14.99003 -14.52530 -14.45326 -14.27709 -14.19738 -14.08671 -13.84366 -13.53164 -13.21115 -13.11273 -13.05245 -12.82075 -12.64987 -12.54523 -12.44918 -12.25831 -12.17548 -12.06494 -11.97423 -11.75200 -11.46921 -11.45286 -11.40244 -11.37738 -11.14469 -10.97244 -10.87036 -10.20232 -9.69026 -8.95370 -7.96063 -5.23680 0.16151 0.78507 1.31359 1.42798 1.45220 1.52076 1.63388 2.07445 2.55047 2.75181 2.99350 3.12541 3.36418 3.50321 3.62186 3.71529 3.81942 3.93096 3.96337 4.01405 4.06751 4.15380 4.16878 4.24189 4.40086 4.40618 4.45626 4.49602 4.52811 4.61689 4.64434 4.72829 4.72919 4.78115 4.84299 4.88929 4.92461 5.00934 5.03261 5.05789 5.14331 5.18240 5.24083 5.32238 5.41910 5.45273 5.52946 5.54964 5.69762 6.27105 6.38511 7.06834 7.10464 7.34171 8.07047 8.33630 9.26400 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010943 B = 0.003865 C = 0.003275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2558.191287 B = 7243.621310 C = 8547.177800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C 0.057 3.943 3 N -0.367 5.367 4 O 0.097 5.903 5 C 0.060 3.940 6 C -0.118 4.118 7 C -0.132 4.132 8 C -0.160 4.160 9 C -0.257 4.257 10 C 0.595 3.405 11 O -0.569 6.569 12 N -0.579 5.579 13 C 0.104 3.896 14 C -0.147 4.147 15 C -0.108 4.108 16 C -0.119 4.119 17 C -0.120 4.120 18 C 0.165 3.835 19 H 0.027 0.973 20 N -0.728 5.728 21 C -0.235 4.235 22 H 0.057 0.943 23 C -0.065 4.065 24 N -0.964 5.964 25 Si 0.962 3.038 26 H -0.282 1.282 27 H -0.287 1.287 28 H -0.285 1.285 29 C 0.115 3.885 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.070 0.930 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.131 0.869 36 H 0.119 0.881 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.049 0.951 46 H 0.083 0.917 47 H 0.045 0.955 48 H 0.377 0.623 49 H 0.252 0.748 50 H 0.036 0.964 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.215 21.881 10.462 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.105 4.105 3 N -0.075 5.075 4 O 0.037 5.963 5 C -0.003 4.003 6 C -0.137 4.137 7 C -0.169 4.169 8 C -0.198 4.198 9 C -0.264 4.264 10 C 0.382 3.618 11 O -0.448 6.448 12 N -0.311 5.311 13 C -0.017 4.017 14 C -0.184 4.184 15 C -0.145 4.145 16 C -0.157 4.157 17 C -0.158 4.158 18 C 0.056 3.944 19 H 0.045 0.955 20 N -0.369 5.369 21 C -0.367 4.367 22 H 0.075 0.925 23 C -0.258 4.258 24 N -0.614 5.614 25 Si 0.791 3.209 26 H -0.209 1.209 27 H -0.212 1.212 28 H -0.211 1.211 29 C -0.009 4.009 30 H 0.126 0.874 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.138 0.862 37 H 0.114 0.886 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.120 0.880 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.101 0.899 47 H 0.064 0.936 48 H 0.210 0.790 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 10.008 22.861 9.756 26.795 hybrid contribution -0.316 -1.983 -1.212 2.345 sum 9.692 20.878 8.544 24.553 Atomic orbital electron populations 1.20428 0.83925 1.04270 1.05162 1.24992 0.99376 0.85940 1.00205 1.73598 0.89264 1.23287 1.21351 1.84466 1.21323 1.22300 1.68236 1.23819 0.95915 0.83177 0.97394 1.20629 0.83975 0.99780 1.09315 1.23223 0.95209 1.00227 0.98243 1.23221 1.00040 1.04381 0.92108 1.21712 0.93612 0.94549 1.16534 1.17150 0.76665 0.84446 0.83571 1.90874 1.52078 1.68880 1.33007 1.47786 1.66797 1.10537 1.05962 1.21861 0.99916 0.97240 0.82731 1.22324 0.94422 1.01974 0.99719 1.21724 0.96989 0.99387 0.96447 1.21735 1.00957 0.93855 0.99114 1.21996 0.98277 0.96655 0.98888 1.20696 0.93030 0.84732 0.95990 0.95502 1.42468 1.72083 1.06590 1.15740 1.19392 1.31110 0.93078 0.93095 0.92519 1.25369 1.02398 0.96871 1.01150 1.69774 1.49749 1.06537 1.35347 0.85391 0.77957 0.77182 0.80338 1.20873 1.21245 1.21148 1.22081 0.97644 0.79311 1.01902 0.87398 0.88592 0.91074 0.84718 0.87012 0.85076 0.86247 0.88560 0.89935 0.89860 0.90643 0.87985 0.90417 0.90935 0.91753 0.93210 0.89917 0.93576 0.79047 0.93889 0.94544 0.88171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.66 9.67 71.23 0.69 -0.97 16 2 C 0.06 1.44 7.45 45.15 0.34 1.77 16 3 N -0.37 -9.23 12.01 -44.79 -0.54 -9.77 16 4 O 0.10 2.25 10.86 77.03 0.84 3.09 16 5 C 0.06 1.41 7.00 25.48 0.18 1.59 16 6 C -0.12 -2.14 6.15 -11.54 -0.07 -2.21 16 7 C -0.13 -1.48 10.18 30.60 0.31 -1.17 16 8 C -0.16 -2.43 10.23 30.59 0.31 -2.12 16 9 C -0.26 -7.13 4.26 -18.74 -0.08 -7.21 16 10 C 0.60 20.18 5.97 86.66 0.52 20.70 16 11 O -0.57 -25.89 15.86 -4.06 -0.06 -25.95 16 12 N -0.58 -16.73 1.69 -828.78 -1.40 -18.13 16 13 C 0.10 2.03 5.90 86.75 0.51 2.54 16 14 C -0.15 -2.48 5.45 30.70 0.17 -2.32 16 15 C -0.11 -1.86 5.75 30.87 0.18 -1.68 16 16 C -0.12 -2.94 5.40 30.73 0.17 -2.78 16 17 C -0.12 -3.84 4.97 30.68 0.15 -3.69 16 18 C 0.16 6.84 2.38 44.88 0.11 6.95 16 19 H 0.03 1.31 6.15 -2.39 -0.01 1.30 16 20 N -0.73 -37.93 5.12 -323.47 -1.66 -39.59 16 21 C -0.23 -13.90 9.89 84.03 0.83 -13.07 16 22 H 0.06 3.50 7.83 -2.91 -0.02 3.48 16 23 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 24 N -0.96 -59.50 13.06 21.65 0.28 -59.22 16 25 Si 0.96 48.68 29.55 68.60 2.03 50.71 16 26 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 27 H -0.29 -14.17 7.11 99.48 0.71 -13.47 16 28 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 29 C 0.12 4.14 4.72 85.91 0.41 4.55 16 30 H 0.11 1.72 7.36 -2.39 -0.02 1.71 16 31 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.07 1.73 7.25 -2.39 -0.02 1.71 16 33 H 0.14 2.54 8.14 -2.38 -0.02 2.52 16 34 H 0.11 1.14 8.02 -2.39 -0.02 1.13 16 35 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.08 1.54 6.05 -2.38 -0.01 1.52 16 40 H 0.08 1.56 3.35 -2.39 -0.01 1.55 16 41 H 0.10 1.16 8.14 -2.38 -0.02 1.15 16 42 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.07 1.06 7.08 -2.39 -0.02 1.04 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.05 1.41 3.54 -2.38 -0.01 1.40 16 46 H 0.08 2.32 5.47 -2.39 -0.01 2.31 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.38 20.36 7.80 -92.72 -0.72 19.64 16 49 H 0.25 15.10 8.31 -92.71 -0.77 14.33 16 50 H 0.04 1.61 8.05 -2.39 -0.02 1.59 16 51 H 0.10 3.10 6.06 -2.38 -0.01 3.09 16 Total: -1.00 -76.02 394.10 4.91 -71.11 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.25 Total: 30.29 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.18 Total: -2.53 kcal Atomic # 7 Polarization: -123.39 SS G_CDS: -3.32 Total: -126.71 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.77 Total: -22.87 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.71 kcal Total: -76.02 4.91 -71.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088348455.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.558 kcal (2) G-P(sol) polarization free energy of solvation -76.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds