Wall clock time and date at job start Wed Apr 1 2020 04:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30014 * 127.33368 * 2 1 4 4 O 1.20658 * 112.30541 * 179.97438 * 3 2 1 5 5 C 1.33500 * 113.15249 * 359.71845 * 4 3 2 6 6 C 1.50696 * 126.82957 * 180.30921 * 5 4 3 7 7 C 1.52999 * 117.50155 * 3.84766 * 6 5 4 8 8 C 1.53005 * 117.49840 * 295.18795 * 6 5 4 9 9 C 1.37365 * 106.33956 * 0.45013 * 5 4 3 10 10 C 1.47397 * 128.56330 * 179.86033 * 9 5 4 11 11 O 1.21608 * 119.99989 * 274.81886 * 10 9 5 12 12 N 1.34778 * 120.00261 * 95.09486 * 10 9 5 13 13 C 1.46950 * 120.35456 * 174.22926 * 12 10 9 14 14 C 1.52338 * 109.09107 * 68.37964 * 13 12 10 15 15 C 1.53800 * 109.16416 * 72.70132 * 14 13 12 16 16 C 1.52452 * 109.42016 * 282.13452 * 15 14 13 17 17 C 1.53959 * 110.73500 * 113.72952 * 16 15 14 18 18 C 1.52883 * 109.71478 * 315.64389 * 17 16 15 19 19 H 1.08999 * 109.47993 * 47.09313 * 18 17 16 20 20 N 1.46504 * 109.47915 * 167.11196 * 18 17 16 21 21 C 1.36941 * 119.99891 * 204.99769 * 20 18 17 22 22 H 1.07997 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99721 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99875 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00254 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46874 * 89.99759 * 25 23 21 27 27 H 1.48505 * 109.47215 * 209.99793 * 25 23 21 28 28 H 1.48493 * 109.47063 * 329.99936 * 25 23 21 29 29 C 1.45336 * 120.35163 * 353.95396 * 12 10 9 30 30 H 1.09003 * 109.46762 * 275.02282 * 1 2 3 31 31 H 1.08996 * 109.47122 * 35.02049 * 1 2 3 32 32 H 1.09001 * 109.46589 * 155.02345 * 1 2 3 33 33 H 1.09004 * 115.55121 * 149.51845 * 6 5 4 34 34 H 1.09006 * 117.49579 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.50191 * 145.01915 * 7 6 5 36 36 H 1.08999 * 117.49756 * 214.98136 * 8 6 5 37 37 H 1.09000 * 117.49255 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.53383 * 188.26301 * 13 12 10 39 39 H 1.09000 * 109.53771 * 308.49828 * 13 12 10 40 40 H 1.08997 * 109.52488 * 192.60738 * 14 13 12 41 41 H 1.09005 * 109.52178 * 312.80086 * 14 13 12 42 42 H 1.09005 * 109.47964 * 42.11282 * 15 14 13 43 43 H 1.08997 * 109.48235 * 162.15162 * 15 14 13 44 44 H 1.09006 * 109.22176 * 234.04836 * 16 15 14 45 45 H 1.08999 * 109.22502 * 353.39722 * 16 15 14 46 46 H 1.09000 * 109.43440 * 75.72071 * 17 16 15 47 47 H 1.09001 * 109.43580 * 195.57205 * 17 16 15 48 48 H 0.97000 * 120.00133 * 25.00971 * 20 18 17 49 49 H 0.97003 * 120.00161 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.68097 * 343.07604 * 29 12 10 51 51 H 1.09002 * 109.68068 * 103.61555 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6007 0.0070 6 6 4.9712 -1.3245 0.0159 7 6 6.2409 -0.4758 0.1090 8 6 5.8737 -1.1624 -1.2090 9 6 2.3992 -1.1696 0.0006 10 6 2.0402 -2.5991 0.0009 11 8 1.9840 -3.2122 -1.0478 12 7 1.7687 -3.2256 1.1630 13 6 1.2879 -4.6142 1.1634 14 6 2.4104 -5.5303 0.6930 15 6 3.4707 -5.6399 1.8016 16 6 4.3347 -4.3838 1.8027 17 6 4.1212 -3.5765 3.0962 18 6 2.6278 -3.4961 3.4134 19 1 2.1825 -4.4866 3.3201 20 7 2.4447 -3.0049 4.7814 21 6 1.3038 -3.3140 5.4729 22 1 0.5392 -3.9201 5.0098 23 6 1.1301 -2.8482 6.7689 24 7 0.0333 -3.1449 7.4333 25 14 2.4523 -1.7993 7.5695 26 1 2.1875 -0.3662 7.2840 27 1 2.4395 -2.0221 9.0377 28 1 3.7809 -2.1755 7.0233 29 6 1.9540 -2.5369 2.4293 30 1 -0.3633 0.0900 1.0238 31 1 -0.3633 0.8416 -0.5897 32 1 -0.3632 -0.9316 -0.4339 33 1 4.9743 -2.2915 0.5189 34 1 6.1201 0.6062 0.1633 35 1 7.0793 -0.8845 0.6729 36 1 6.4708 -2.0226 -1.5116 37 1 5.5111 -0.5325 -2.0214 38 1 0.9867 -4.8953 2.1725 39 1 0.4364 -4.7053 0.4890 40 1 2.0068 -6.5193 0.4760 41 1 2.8657 -5.1162 -0.2067 42 1 2.9770 -5.7422 2.7680 43 1 4.0982 -6.5124 1.6196 44 1 5.3838 -4.6697 1.7272 45 1 4.0695 -3.7650 0.9454 46 1 4.6409 -4.0665 3.9195 47 1 4.5187 -2.5700 2.9653 48 1 3.1315 -2.4607 5.1974 49 1 -0.0879 -2.8197 8.3392 50 1 2.5850 -1.6605 2.2816 51 1 0.9860 -2.2301 2.8255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088348456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:33 Heat of formation + Delta-G solvation = 73.123032 kcal Electronic energy + Delta-G solvation = -33395.175226 eV Core-core repulsion = 29299.499299 eV Total energy + Delta-G solvation = -4095.675927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -44.91696 -40.39811 -37.72383 -37.62351 -34.89249 -34.62675 -34.03881 -32.40822 -31.73045 -30.44964 -28.85615 -27.62960 -26.36087 -24.96662 -23.74733 -23.36798 -22.71746 -22.23138 -21.50859 -20.16252 -19.55476 -18.91806 -17.84536 -17.71928 -17.40825 -16.72025 -16.06095 -16.00100 -15.66093 -14.92971 -14.54197 -14.26295 -14.15328 -13.94455 -13.70037 -13.43108 -13.40291 -13.21094 -13.06198 -12.80100 -12.66798 -12.58306 -12.23110 -11.90227 -11.88229 -11.73448 -11.58177 -11.45978 -11.27396 -11.00101 -10.94459 -10.79050 -10.72865 -10.51208 -10.37523 -10.35261 -10.04497 -9.92725 -9.77402 -9.68539 -9.24989 -9.03578 -8.37252 -7.39956 -5.87898 -3.25152 1.20017 1.88272 2.45883 2.69007 3.21085 3.30403 3.33264 3.39303 3.48890 3.99307 4.07483 4.43104 4.49473 4.54767 4.59792 4.69821 4.85965 4.92981 5.02300 5.15041 5.22888 5.26547 5.27801 5.32890 5.36490 5.42124 5.43869 5.51273 5.52804 5.58113 5.62621 5.66653 5.67470 5.76373 5.78025 5.79733 5.87601 5.96468 5.97702 6.09514 6.13679 6.18956 6.22196 6.40904 6.49581 6.52454 6.66279 6.82311 7.53139 7.85825 8.17606 8.18524 8.30874 9.07933 9.80642 9.99117 11.29797 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004416 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.759686 B = 6338.707405 C = 6835.373742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.057 3.943 3 N -0.356 5.356 4 O 0.095 5.905 5 C 0.043 3.957 6 C -0.098 4.098 7 C -0.162 4.162 8 C -0.155 4.155 9 C -0.231 4.231 10 C 0.598 3.402 11 O -0.534 6.534 12 N -0.584 5.584 13 C 0.115 3.885 14 C -0.139 4.139 15 C -0.128 4.128 16 C -0.118 4.118 17 C -0.129 4.129 18 C 0.162 3.838 19 H 0.078 0.922 20 N -0.743 5.743 21 C -0.250 4.250 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.929 5.929 25 Si 0.881 3.119 26 H -0.284 1.284 27 H -0.290 1.290 28 H -0.276 1.276 29 C 0.083 3.917 30 H 0.089 0.911 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.143 0.857 34 H 0.105 0.895 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.067 0.933 47 H 0.055 0.945 48 H 0.362 0.638 49 H 0.261 0.739 50 H 0.067 0.933 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 1.296 -16.571 19.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.106 4.106 3 N -0.062 5.062 4 O 0.034 5.966 5 C -0.020 4.020 6 C -0.117 4.117 7 C -0.199 4.199 8 C -0.193 4.193 9 C -0.238 4.238 10 C 0.383 3.617 11 O -0.411 6.411 12 N -0.316 5.316 13 C -0.007 4.007 14 C -0.177 4.177 15 C -0.165 4.165 16 C -0.156 4.156 17 C -0.167 4.167 18 C 0.051 3.949 19 H 0.096 0.904 20 N -0.385 5.385 21 C -0.380 4.380 22 H 0.109 0.891 23 C -0.186 4.186 24 N -0.576 5.576 25 Si 0.712 3.288 26 H -0.211 1.211 27 H -0.217 1.217 28 H -0.202 1.202 29 C -0.042 4.042 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.160 0.840 34 H 0.124 0.876 35 H 0.127 0.873 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.079 0.921 46 H 0.086 0.914 47 H 0.074 0.926 48 H 0.195 0.805 49 H 0.071 0.929 50 H 0.086 0.914 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.280 2.186 -16.991 19.483 hybrid contribution 0.672 0.191 0.895 1.135 sum 9.951 2.377 -16.096 19.073 Atomic orbital electron populations 1.20233 0.85112 1.04007 1.04160 1.24722 0.98589 0.86454 1.00786 1.73598 0.89010 1.23238 1.20385 1.84486 1.21574 1.22359 1.68203 1.23450 0.95469 0.83490 0.99570 1.20679 0.84480 1.00276 1.06235 1.23104 0.96698 0.99783 1.00295 1.23107 1.00987 1.03611 0.91547 1.21818 0.92411 0.95576 1.14030 1.16866 0.77276 0.83818 0.83706 1.90771 1.52458 1.66423 1.31494 1.47787 1.63962 1.13810 1.06008 1.21609 0.96445 0.79681 1.02942 1.22070 0.96935 0.99377 0.99290 1.21841 0.97524 0.97271 0.99846 1.21755 0.99061 0.96797 0.97961 1.22106 0.97522 0.99695 0.97417 1.20812 0.92918 0.96693 0.84438 0.90430 1.42762 1.21777 1.62997 1.10950 1.19021 0.95277 1.27894 0.95796 0.89131 1.24655 0.96936 1.00209 0.96784 1.69693 1.26195 1.49613 1.12107 0.86605 0.82152 0.80969 0.79120 1.21050 1.21658 1.20234 1.22597 1.02299 0.96650 0.82660 0.89227 0.90019 0.89896 0.83997 0.87620 0.87333 0.87325 0.88116 0.88650 0.91225 0.91223 0.90352 0.90264 0.92391 0.92712 0.92114 0.91395 0.92581 0.80493 0.92927 0.91422 0.90584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.92 10.49 36.01 0.38 -0.54 16 2 C 0.06 0.82 7.59 -79.77 -0.61 0.21 16 3 N -0.36 -5.34 12.01 34.78 0.42 -4.93 16 4 O 0.10 1.34 10.83 18.63 0.20 1.54 16 5 C 0.04 0.58 6.82 -34.63 -0.24 0.34 16 6 C -0.10 -1.04 6.14 -91.77 -0.56 -1.60 16 7 C -0.16 -1.32 10.18 -26.69 -0.27 -1.59 16 8 C -0.16 -1.30 10.24 -26.69 -0.27 -1.57 16 9 C -0.23 -3.41 4.34 -102.89 -0.45 -3.85 16 10 C 0.60 9.15 6.04 -12.53 -0.08 9.07 16 11 O -0.53 -9.30 15.65 5.27 0.08 -9.21 16 12 N -0.58 -8.45 1.69 -175.90 -0.30 -8.75 16 13 C 0.11 1.54 5.21 -4.13 -0.02 1.52 16 14 C -0.14 -1.68 5.54 -26.65 -0.15 -1.83 16 15 C -0.13 -1.53 5.49 -26.60 -0.15 -1.67 16 16 C -0.12 -1.42 4.89 -26.51 -0.13 -1.55 16 17 C -0.13 -1.82 5.21 -26.29 -0.14 -1.96 16 18 C 0.16 2.73 2.29 -67.96 -0.16 2.57 16 19 H 0.08 1.34 3.29 -51.93 -0.17 1.17 16 20 N -0.74 -15.94 4.93 -53.46 -0.26 -16.20 16 21 C -0.25 -6.50 10.36 -15.06 -0.16 -6.65 16 22 H 0.09 2.51 8.06 -52.49 -0.42 2.09 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -27.89 13.97 55.49 0.78 -27.12 16 25 Si 0.88 21.15 27.74 -169.99 -4.71 16.43 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 H -0.28 -6.20 6.52 56.52 0.37 -5.83 16 29 C 0.08 1.34 5.41 -4.64 -0.03 1.32 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.14 1.52 5.46 -51.93 -0.28 1.24 16 34 H 0.11 0.86 8.00 -51.93 -0.42 0.45 16 35 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.10 1.32 6.07 -51.93 -0.32 1.01 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.08 1.07 6.01 -51.93 -0.31 0.76 16 42 H 0.08 1.06 5.47 -51.93 -0.28 0.78 16 43 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.77 3.38 -51.93 -0.18 0.59 16 46 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 47 H 0.06 0.76 7.85 -51.93 -0.41 0.35 16 48 H 0.36 7.79 5.66 -40.82 -0.23 7.56 16 49 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 50 H 0.07 1.09 6.10 -51.93 -0.32 0.77 16 51 H 0.08 1.39 8.08 -51.93 -0.42 0.97 16 LS Contribution 390.58 15.07 5.89 5.89 Total: -1.00 -31.13 390.58 -8.59 -39.72 By element: Atomic # 1 Polarization: 17.78 SS G_CDS: -7.57 Total: 10.21 kcal Atomic # 6 Polarization: -4.48 SS G_CDS: -3.11 Total: -7.59 kcal Atomic # 7 Polarization: -57.62 SS G_CDS: 0.63 Total: -56.99 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.28 Total: -7.68 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.71 Total: 16.43 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.13 -8.59 -39.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088348456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.845 kcal (2) G-P(sol) polarization free energy of solvation -31.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds