Wall clock time and date at job start Wed Apr 1 2020 04:29:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30014 * 127.33368 * 2 1 4 4 O 1.20658 * 112.30541 * 179.97438 * 3 2 1 5 5 C 1.33500 * 113.15249 * 359.71845 * 4 3 2 6 6 C 1.50696 * 126.82957 * 180.30921 * 5 4 3 7 7 C 1.52999 * 117.50155 * 3.84766 * 6 5 4 8 8 C 1.53005 * 117.49840 * 295.18795 * 6 5 4 9 9 C 1.37365 * 106.33956 * 0.45013 * 5 4 3 10 10 C 1.47397 * 128.56330 * 179.86033 * 9 5 4 11 11 O 1.21608 * 119.99989 * 274.81886 * 10 9 5 12 12 N 1.34778 * 120.00261 * 95.09486 * 10 9 5 13 13 C 1.46950 * 120.35456 * 174.22926 * 12 10 9 14 14 C 1.52338 * 109.09107 * 68.37964 * 13 12 10 15 15 C 1.53800 * 109.16416 * 72.70132 * 14 13 12 16 16 C 1.52452 * 109.42016 * 282.13452 * 15 14 13 17 17 C 1.53959 * 110.73500 * 113.72952 * 16 15 14 18 18 C 1.52883 * 109.71478 * 315.64389 * 17 16 15 19 19 H 1.08999 * 109.47993 * 47.09313 * 18 17 16 20 20 N 1.46504 * 109.47915 * 167.11196 * 18 17 16 21 21 C 1.36941 * 119.99891 * 204.99769 * 20 18 17 22 22 H 1.07997 * 119.99853 * 0.02562 * 21 20 18 23 23 C 1.38807 * 119.99721 * 180.02562 * 21 20 18 24 24 N 1.31620 * 119.99875 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 120.00254 * 0.02562 * 23 21 20 26 26 H 1.48502 * 109.46874 * 89.99759 * 25 23 21 27 27 H 1.48505 * 109.47215 * 209.99793 * 25 23 21 28 28 H 1.48493 * 109.47063 * 329.99936 * 25 23 21 29 29 C 1.45336 * 120.35163 * 353.95396 * 12 10 9 30 30 H 1.09003 * 109.46762 * 275.02282 * 1 2 3 31 31 H 1.08996 * 109.47122 * 35.02049 * 1 2 3 32 32 H 1.09001 * 109.46589 * 155.02345 * 1 2 3 33 33 H 1.09004 * 115.55121 * 149.51845 * 6 5 4 34 34 H 1.09006 * 117.49579 * 359.97438 * 7 6 5 35 35 H 1.08998 * 117.50191 * 145.01915 * 7 6 5 36 36 H 1.08999 * 117.49756 * 214.98136 * 8 6 5 37 37 H 1.09000 * 117.49255 * 359.97438 * 8 6 5 38 38 H 1.08999 * 109.53383 * 188.26301 * 13 12 10 39 39 H 1.09000 * 109.53771 * 308.49828 * 13 12 10 40 40 H 1.08997 * 109.52488 * 192.60738 * 14 13 12 41 41 H 1.09005 * 109.52178 * 312.80086 * 14 13 12 42 42 H 1.09005 * 109.47964 * 42.11282 * 15 14 13 43 43 H 1.08997 * 109.48235 * 162.15162 * 15 14 13 44 44 H 1.09006 * 109.22176 * 234.04836 * 16 15 14 45 45 H 1.08999 * 109.22502 * 353.39722 * 16 15 14 46 46 H 1.09000 * 109.43440 * 75.72071 * 17 16 15 47 47 H 1.09001 * 109.43580 * 195.57205 * 17 16 15 48 48 H 0.97000 * 120.00133 * 25.00971 * 20 18 17 49 49 H 0.97003 * 120.00161 * 179.97438 * 24 23 21 50 50 H 1.08999 * 109.68097 * 343.07604 * 29 12 10 51 51 H 1.09002 * 109.68068 * 103.61555 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2955 1.0338 0.0000 4 8 3.4608 0.7209 0.0005 5 6 3.6495 -0.6007 0.0070 6 6 4.9712 -1.3245 0.0159 7 6 6.2409 -0.4758 0.1090 8 6 5.8737 -1.1624 -1.2090 9 6 2.3992 -1.1696 0.0006 10 6 2.0402 -2.5991 0.0009 11 8 1.9840 -3.2122 -1.0478 12 7 1.7687 -3.2256 1.1630 13 6 1.2879 -4.6142 1.1634 14 6 2.4104 -5.5303 0.6930 15 6 3.4707 -5.6399 1.8016 16 6 4.3347 -4.3838 1.8027 17 6 4.1212 -3.5765 3.0962 18 6 2.6278 -3.4961 3.4134 19 1 2.1825 -4.4866 3.3201 20 7 2.4447 -3.0049 4.7814 21 6 1.3038 -3.3140 5.4729 22 1 0.5392 -3.9201 5.0098 23 6 1.1301 -2.8482 6.7689 24 7 0.0333 -3.1449 7.4333 25 14 2.4523 -1.7993 7.5695 26 1 2.1875 -0.3662 7.2840 27 1 2.4395 -2.0221 9.0377 28 1 3.7809 -2.1755 7.0233 29 6 1.9540 -2.5369 2.4293 30 1 -0.3633 0.0900 1.0238 31 1 -0.3633 0.8416 -0.5897 32 1 -0.3632 -0.9316 -0.4339 33 1 4.9743 -2.2915 0.5189 34 1 6.1201 0.6062 0.1633 35 1 7.0793 -0.8845 0.6729 36 1 6.4708 -2.0226 -1.5116 37 1 5.5111 -0.5325 -2.0214 38 1 0.9867 -4.8953 2.1725 39 1 0.4364 -4.7053 0.4890 40 1 2.0068 -6.5193 0.4760 41 1 2.8657 -5.1162 -0.2067 42 1 2.9770 -5.7422 2.7680 43 1 4.0982 -6.5124 1.6196 44 1 5.3838 -4.6697 1.7272 45 1 4.0695 -3.7650 0.9454 46 1 4.6409 -4.0665 3.9195 47 1 4.5187 -2.5700 2.9653 48 1 3.1315 -2.4607 5.1974 49 1 -0.0879 -2.8197 8.3392 50 1 2.5850 -1.6605 2.2816 51 1 0.9860 -2.2301 2.8255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088348456.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:32 Heat of formation + Delta-G solvation = 56.402132 kcal Electronic energy + Delta-G solvation = -33395.900299 eV Core-core repulsion = 29299.499299 eV Total energy + Delta-G solvation = -4096.401000 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -46.00710 -41.62203 -39.00636 -38.36686 -36.39015 -35.80875 -35.16808 -34.05313 -32.89328 -32.00133 -29.88714 -28.99792 -27.52934 -26.23694 -24.98426 -24.61644 -23.52514 -23.24426 -22.81459 -21.32212 -20.70940 -20.06007 -19.57727 -18.95490 -18.57583 -17.73701 -17.29056 -17.04778 -16.91434 -16.38862 -15.75669 -15.53292 -15.40586 -15.17199 -14.85862 -14.68099 -14.40282 -14.37448 -14.25297 -14.14678 -14.01316 -13.85471 -13.38784 -13.19609 -13.02909 -12.89026 -12.66596 -12.55212 -12.44347 -12.26063 -12.14699 -12.09898 -11.93755 -11.80262 -11.59753 -11.51508 -11.32353 -11.30273 -11.18278 -11.03079 -10.79573 -10.22228 -9.69121 -9.26572 -8.00680 -5.34600 0.16526 0.76933 1.25503 1.39119 1.41071 1.48346 1.64730 2.05280 2.49324 2.76526 2.96559 3.12209 3.31150 3.42771 3.58625 3.65745 3.75605 3.80281 3.95488 3.98018 4.05398 4.13584 4.14739 4.23406 4.32658 4.37925 4.46778 4.48403 4.50816 4.54098 4.61983 4.64589 4.72968 4.74476 4.80499 4.89246 4.94342 4.96767 5.01026 5.03683 5.13625 5.19568 5.20641 5.28792 5.33940 5.41909 5.45203 5.66793 5.79937 6.20567 6.30496 6.96007 7.09200 7.10325 7.84023 8.02165 9.20288 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009591 B = 0.004416 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2918.759686 B = 6338.707405 C = 6835.373742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.048 3.952 3 N -0.373 5.373 4 O 0.093 5.907 5 C 0.058 3.942 6 C -0.125 4.125 7 C -0.146 4.146 8 C -0.145 4.145 9 C -0.262 4.262 10 C 0.607 3.393 11 O -0.555 6.555 12 N -0.578 5.578 13 C 0.110 3.890 14 C -0.130 4.130 15 C -0.126 4.126 16 C -0.112 4.112 17 C -0.122 4.122 18 C 0.157 3.843 19 H 0.076 0.924 20 N -0.745 5.745 21 C -0.224 4.224 22 H 0.062 0.938 23 C -0.057 4.057 24 N -0.981 5.981 25 Si 0.945 3.055 26 H -0.285 1.285 27 H -0.300 1.300 28 H -0.248 1.248 29 C 0.102 3.898 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.144 0.856 34 H 0.104 0.896 35 H 0.130 0.870 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.087 0.913 39 H 0.071 0.929 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.063 0.937 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.056 0.944 46 H 0.067 0.933 47 H 0.065 0.935 48 H 0.365 0.635 49 H 0.256 0.744 50 H 0.071 0.929 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.795 1.286 -17.833 21.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.114 4.114 3 N -0.082 5.082 4 O 0.033 5.967 5 C -0.006 4.006 6 C -0.144 4.144 7 C -0.183 4.183 8 C -0.182 4.182 9 C -0.269 4.269 10 C 0.394 3.606 11 O -0.434 6.434 12 N -0.308 5.308 13 C -0.011 4.011 14 C -0.168 4.168 15 C -0.163 4.163 16 C -0.150 4.150 17 C -0.160 4.160 18 C 0.049 3.951 19 H 0.093 0.907 20 N -0.388 5.388 21 C -0.355 4.355 22 H 0.080 0.920 23 C -0.249 4.249 24 N -0.632 5.632 25 Si 0.773 3.227 26 H -0.211 1.211 27 H -0.227 1.227 28 H -0.172 1.172 29 C -0.024 4.024 30 H 0.109 0.891 31 H 0.116 0.884 32 H 0.102 0.898 33 H 0.161 0.839 34 H 0.123 0.877 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.089 0.911 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.082 0.918 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.199 0.801 49 H 0.065 0.935 50 H 0.089 0.911 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 12.370 2.170 -18.310 22.203 hybrid contribution -0.308 0.143 1.160 1.209 sum 12.061 2.312 -17.150 21.093 Atomic orbital electron populations 1.20314 0.83831 1.04798 1.04526 1.25129 0.99627 0.86374 1.00254 1.73580 0.89419 1.23680 1.21482 1.84459 1.21254 1.22778 1.68180 1.23974 0.96302 0.83076 0.97197 1.20864 0.84048 1.00686 1.08767 1.23234 0.95508 0.99540 1.00008 1.23233 0.99700 1.04210 0.91085 1.21855 0.93340 0.95287 1.16454 1.16834 0.76575 0.83940 0.83251 1.90754 1.53514 1.67056 1.32071 1.47690 1.63748 1.14106 1.05302 1.21729 0.97346 0.79456 1.02590 1.21998 0.96345 0.99668 0.98783 1.21823 0.97573 0.98157 0.98748 1.21724 1.00565 0.96314 0.96355 1.22020 0.94662 1.00760 0.98530 1.21027 0.95469 0.96336 0.82272 0.90698 1.42756 1.20349 1.63133 1.12533 1.18977 0.95588 1.25430 0.95504 0.91991 1.25384 0.99233 1.02521 0.97785 1.69866 1.28776 1.52127 1.12406 0.85565 0.80806 0.78930 0.77430 1.21137 1.22685 1.17195 1.22194 1.00648 0.96513 0.83082 0.89149 0.88369 0.89794 0.83876 0.87745 0.85159 0.85333 0.88506 0.89473 0.91055 0.89525 0.91323 0.91824 0.90423 0.90248 0.92519 0.91477 0.91648 0.80148 0.93498 0.91103 0.93414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.81 10.49 71.24 0.75 -1.07 16 2 C 0.05 1.38 7.59 45.16 0.34 1.72 16 3 N -0.37 -11.05 12.01 -44.77 -0.54 -11.59 16 4 O 0.09 2.53 10.83 76.93 0.83 3.36 16 5 C 0.06 1.47 6.82 25.48 0.17 1.65 16 6 C -0.12 -2.34 6.14 -11.54 -0.07 -2.41 16 7 C -0.15 -1.90 10.18 30.62 0.31 -1.59 16 8 C -0.15 -2.00 10.24 30.62 0.31 -1.69 16 9 C -0.26 -7.57 4.34 -18.74 -0.08 -7.65 16 10 C 0.61 18.22 6.04 86.65 0.52 18.75 16 11 O -0.55 -18.93 15.65 -4.06 -0.06 -18.99 16 12 N -0.58 -16.48 1.69 -828.66 -1.40 -17.89 16 13 C 0.11 2.91 5.21 86.07 0.45 3.36 16 14 C -0.13 -2.94 5.54 30.64 0.17 -2.77 16 15 C -0.13 -2.71 5.49 30.68 0.17 -2.54 16 16 C -0.11 -2.36 4.89 30.74 0.15 -2.21 16 17 C -0.12 -3.13 5.21 30.88 0.16 -2.97 16 18 C 0.16 5.18 2.29 44.97 0.10 5.28 16 19 H 0.08 2.56 3.29 -2.39 -0.01 2.55 16 20 N -0.75 -31.40 4.93 -323.04 -1.59 -32.99 16 21 C -0.22 -11.79 10.36 84.03 0.87 -10.92 16 22 H 0.06 3.57 8.06 -2.91 -0.02 3.55 16 23 C -0.06 -3.22 5.50 84.86 0.47 -2.76 16 24 N -0.98 -60.72 13.97 21.65 0.30 -60.42 16 25 Si 0.94 43.61 27.74 68.60 1.90 45.51 16 26 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H -0.25 -10.12 6.52 99.48 0.65 -9.47 16 29 C 0.10 3.24 5.41 86.61 0.47 3.71 16 30 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 31 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.14 2.66 5.46 -2.38 -0.01 2.65 16 34 H 0.10 1.41 8.00 -2.38 -0.02 1.39 16 35 H 0.13 1.15 8.14 -2.39 -0.02 1.14 16 36 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 38 H 0.09 2.45 6.07 -2.39 -0.01 2.43 16 39 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.07 1.74 6.01 -2.38 -0.01 1.73 16 42 H 0.06 1.60 5.47 -2.38 -0.01 1.59 16 43 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 44 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 45 H 0.06 1.28 3.38 -2.39 -0.01 1.27 16 46 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 47 H 0.06 1.58 7.85 -2.39 -0.02 1.56 16 48 H 0.37 14.98 5.66 -92.71 -0.52 14.46 16 49 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 50 H 0.07 2.23 6.10 -2.39 -0.01 2.22 16 51 H 0.05 1.80 8.08 -2.39 -0.02 1.78 16 Total: -1.00 -68.33 390.58 5.10 -63.23 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.39 Total: 33.87 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 5.27 Total: -4.09 kcal Atomic # 7 Polarization: -119.66 SS G_CDS: -3.23 Total: -122.89 kcal Atomic # 8 Polarization: -16.40 SS G_CDS: 0.77 Total: -15.63 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 1.90 Total: 45.51 kcal Total: -68.33 5.10 -63.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088348456.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.631 kcal (2) G-P(sol) polarization free energy of solvation -68.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds