Wall clock time and date at job start Wed Apr 1 2020 04:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41377 * 126.80496 * 2 1 4 4 C 1.35448 * 103.98704 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.77546 * 179.97438 * 4 3 2 6 6 C 1.50702 * 115.54881 * 330.11087 * 5 4 3 7 7 O 1.21277 * 119.99965 * 127.15392 * 6 5 4 8 8 N 1.34781 * 119.99968 * 307.15110 * 6 5 4 9 9 C 1.46958 * 120.36305 * 354.25398 * 8 6 5 10 10 C 1.52333 * 109.09999 * 291.65188 * 9 8 6 11 11 C 1.53807 * 109.15896 * 287.31154 * 10 9 8 12 12 C 1.52439 * 109.40981 * 77.83839 * 11 10 9 13 13 C 1.53958 * 110.72756 * 246.26596 * 12 11 10 14 14 C 1.52882 * 109.72500 * 44.36287 * 13 12 11 15 15 H 1.08996 * 109.48688 * 312.89973 * 14 13 12 16 16 N 1.46504 * 109.48554 * 192.86425 * 14 13 12 17 17 C 1.36932 * 120.00015 * 84.75996 * 16 14 13 18 18 H 1.07999 * 120.00327 * 0.27728 * 17 16 14 19 19 C 1.38816 * 120.00355 * 180.27415 * 17 16 14 20 20 N 1.31611 * 120.00392 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99377 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47261 * 90.00071 * 21 19 17 23 23 H 1.48500 * 109.46971 * 209.99826 * 21 19 17 24 24 H 1.48500 * 109.47528 * 329.99660 * 21 19 17 25 25 C 1.45319 * 120.37522 * 174.25965 * 8 6 5 26 26 C 1.52994 * 117.49986 * 115.78510 * 5 4 3 27 27 C 1.53001 * 117.49737 * 184.44192 * 5 4 3 28 28 O 1.34044 * 106.44501 * 0.23421 * 4 3 2 29 29 N 1.20916 * 111.56952 * 359.57142 * 28 4 3 30 30 H 1.08997 * 109.47465 * 90.00458 * 1 2 3 31 31 H 1.09007 * 109.47403 * 210.00124 * 1 2 3 32 32 H 1.08994 * 109.47059 * 330.00324 * 1 2 3 33 33 H 1.08000 * 128.00390 * 359.95948 * 3 2 1 34 34 H 1.09008 * 109.53321 * 171.76355 * 9 8 6 35 35 H 1.09003 * 109.59582 * 51.57732 * 9 8 6 36 36 H 1.09000 * 109.52915 * 167.40335 * 10 9 8 37 37 H 1.09001 * 109.57683 * 47.24153 * 10 9 8 38 38 H 1.09000 * 109.47582 * 317.85698 * 11 10 9 39 39 H 1.08998 * 109.47732 * 197.82359 * 11 10 9 40 40 H 1.09006 * 109.22585 * 125.94638 * 12 11 10 41 41 H 1.09001 * 109.19749 * 6.56301 * 12 11 10 42 42 H 1.09006 * 109.43032 * 284.28790 * 13 12 11 43 43 H 1.08999 * 109.43311 * 164.44312 * 13 12 11 44 44 H 0.96996 * 119.99735 * 265.03894 * 16 14 13 45 45 H 0.97000 * 120.00351 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.65752 * 16.89281 * 25 8 6 47 47 H 1.09005 * 109.67818 * 256.36575 * 25 8 6 48 48 H 1.09008 * 117.49994 * 215.00152 * 26 5 4 49 49 H 1.09005 * 117.50166 * 0.02562 * 26 5 4 50 50 H 1.08998 * 117.49901 * 359.97438 * 27 5 4 51 51 H 1.09008 * 117.49812 * 144.99437 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9022 1.3694 0.0003 6 6 4.8662 2.7146 -0.6782 7 8 5.2541 3.7013 -0.0893 8 7 4.4030 2.8211 -1.9394 9 6 4.0494 1.6175 -2.7050 10 6 5.3183 0.8343 -3.0166 11 6 6.1208 1.5817 -4.0951 12 6 6.8572 2.7541 -3.4571 13 6 6.3045 4.0932 -3.9781 14 6 4.7764 4.0489 -3.9957 15 1 4.4449 3.1177 -4.4549 16 7 4.2635 5.1838 -4.7673 17 6 4.1555 5.0929 -6.1293 18 1 4.4442 4.1830 -6.6344 19 6 3.6748 6.1702 -6.8610 20 7 3.5715 6.0830 -8.1701 21 14 3.1761 7.7443 -5.9874 22 1 4.3485 8.6506 -5.8926 23 1 2.0937 8.4135 -6.7528 24 1 2.6893 7.4200 -4.6224 25 6 4.2478 4.1271 -2.5574 26 6 5.8100 1.2187 1.2225 27 6 6.1963 0.5599 -0.1040 28 8 3.4537 -0.7254 -0.0044 29 7 2.2868 -1.0424 0.0007 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0710 2.1742 -0.0006 34 1 3.5624 1.9078 -3.6360 35 1 3.3727 0.9965 -2.1179 36 1 5.0536 -0.1580 -3.3817 37 1 5.9211 0.7411 -2.1132 38 1 5.4409 1.9532 -4.8618 39 1 6.8426 0.9017 -4.5475 40 1 7.9181 2.6855 -3.6981 41 1 6.7313 2.7105 -2.3753 42 1 6.6738 4.2694 -4.9885 43 1 6.6363 4.9009 -3.3257 44 1 4.0042 6.0011 -4.3136 45 1 3.2360 6.8360 -8.6814 46 1 4.8175 4.8681 -1.9968 47 1 3.1939 4.4051 -2.5683 48 1 6.3813 2.0925 1.5360 49 1 5.4674 0.5675 2.0268 50 1 6.1076 -0.5243 -0.1720 51 1 7.0217 1.0003 -0.6634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088368867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:36 Heat of formation + Delta-G solvation = 85.022293 kcal Electronic energy + Delta-G solvation = -33122.891034 eV Core-core repulsion = 29027.731097 eV Total energy + Delta-G solvation = -4095.159937 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.23649 -40.96788 -38.24874 -36.90720 -35.16463 -34.92725 -33.95481 -32.26644 -31.75253 -30.35520 -28.96618 -27.94902 -26.36806 -25.04968 -23.58718 -23.50755 -22.89275 -22.33091 -21.54751 -20.73582 -19.20420 -18.72208 -17.97552 -17.78933 -17.72208 -16.72098 -16.47667 -15.74916 -15.32113 -14.93777 -14.46110 -14.21100 -14.00578 -13.97603 -13.78508 -13.70675 -13.62308 -13.44717 -13.22808 -12.95925 -12.79701 -12.62391 -12.48113 -12.03132 -11.89510 -11.69174 -11.59533 -11.43586 -11.22326 -11.10781 -11.03770 -10.86205 -10.64618 -10.41191 -10.30930 -10.26356 -10.21269 -9.98212 -9.82283 -9.63689 -9.34346 -8.95640 -8.44826 -7.32362 -5.82007 -3.18421 1.11577 1.94944 2.13673 2.73034 2.95360 3.34772 3.38409 3.41613 3.43496 3.90309 3.92569 4.14346 4.39433 4.47363 4.55083 4.73955 4.78023 4.94613 4.99371 5.04489 5.18214 5.21168 5.23469 5.25127 5.30032 5.32316 5.37471 5.45861 5.48481 5.50249 5.51874 5.54877 5.62590 5.72383 5.74431 5.83169 5.85178 5.91450 5.95448 6.05386 6.13065 6.23893 6.38241 6.46821 6.53463 6.62268 6.89334 6.94167 7.36257 7.92262 7.99590 8.05698 8.36402 9.14272 9.87038 10.05975 11.35991 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003552 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.919599 B = 7881.138284 C = 8640.882314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.023 3.977 3 C -0.220 4.220 4 C 0.019 3.981 5 C -0.092 4.092 6 C 0.560 3.440 7 O -0.530 6.530 8 N -0.583 5.583 9 C 0.098 3.902 10 C -0.151 4.151 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.135 4.135 14 C 0.162 3.838 15 H 0.074 0.926 16 N -0.747 5.747 17 C -0.244 4.244 18 H 0.090 0.910 19 C 0.008 3.992 20 N -0.932 5.932 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.277 1.277 25 C 0.099 3.901 26 C -0.126 4.126 27 C -0.143 4.143 28 O 0.102 5.898 29 N -0.364 5.364 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.170 0.830 34 H 0.097 0.903 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.057 0.943 40 H 0.050 0.950 41 H 0.053 0.947 42 H 0.070 0.930 43 H 0.051 0.949 44 H 0.361 0.639 45 H 0.260 0.740 46 H 0.088 0.912 47 H 0.068 0.932 48 H 0.119 0.881 49 H 0.108 0.892 50 H 0.116 0.884 51 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 -14.544 18.790 23.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.135 4.135 3 C -0.241 4.241 4 C -0.045 4.045 5 C -0.097 4.097 6 C 0.346 3.654 7 O -0.407 6.407 8 N -0.314 5.314 9 C -0.025 4.025 10 C -0.188 4.188 11 C -0.164 4.164 12 C -0.153 4.153 13 C -0.175 4.175 14 C 0.052 3.948 15 H 0.091 0.909 16 N -0.390 5.390 17 C -0.373 4.373 18 H 0.108 0.892 19 C -0.188 4.188 20 N -0.580 5.580 21 Si 0.713 3.287 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.203 1.203 25 C -0.024 4.024 26 C -0.164 4.164 27 C -0.180 4.180 28 O 0.036 5.964 29 N -0.069 5.069 30 H 0.102 0.898 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.187 0.813 34 H 0.115 0.885 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.070 0.930 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.086 0.914 48 H 0.137 0.863 49 H 0.126 0.874 50 H 0.134 0.866 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.047 -15.393 18.819 24.335 hybrid contribution -0.577 2.087 0.291 2.185 sum 0.470 -13.306 19.110 23.291 Atomic orbital electron populations 1.20193 0.85750 1.03786 1.03720 1.23568 0.99117 0.88499 1.02362 1.22348 0.90839 1.01347 1.09584 1.22783 0.95517 0.83717 1.02487 1.19486 0.87729 0.95022 1.07424 1.18755 0.77622 0.87601 0.81424 1.90718 1.47592 1.37533 1.64811 1.47574 1.63298 1.07958 1.12603 1.21888 0.97326 0.85843 0.97434 1.22407 0.97137 0.98745 1.00546 1.21819 0.99506 0.96902 0.98172 1.21680 0.98701 0.95192 0.99744 1.22397 0.98112 0.95453 1.01537 1.20886 0.91965 0.92979 0.88921 0.90856 1.42704 1.78253 1.13251 1.04758 1.18999 1.36736 1.00843 0.80753 0.89188 1.24647 1.01197 0.97796 0.95202 1.69690 1.52152 1.31575 1.04543 0.86581 0.78333 0.84836 0.78945 1.21043 1.21755 1.20298 1.21977 1.01443 0.83901 0.95126 1.23256 0.98813 1.03487 0.90830 1.23250 0.94441 1.00072 1.00277 1.84809 1.21836 1.21915 1.67821 1.73865 0.89057 1.23703 1.20318 0.89834 0.90525 0.89924 0.81266 0.88476 0.91392 0.91057 0.90306 0.90213 0.92372 0.93148 0.92814 0.91160 0.93002 0.80640 0.93005 0.89320 0.91427 0.86262 0.87388 0.86592 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.58 10.47 36.01 0.38 -0.20 16 2 C 0.02 0.24 7.33 -82.10 -0.60 -0.36 16 3 C -0.22 -2.35 9.44 -39.38 -0.37 -2.72 16 4 C 0.02 0.20 4.60 -35.30 -0.16 0.03 16 5 C -0.09 -0.95 1.48 -156.81 -0.23 -1.18 16 6 C 0.56 7.44 5.17 -10.98 -0.06 7.38 16 7 O -0.53 -8.68 15.85 5.56 0.09 -8.59 16 8 N -0.58 -7.71 1.68 -174.38 -0.29 -8.01 16 9 C 0.10 1.16 4.91 -4.13 -0.02 1.14 16 10 C -0.15 -1.61 5.46 -26.65 -0.15 -1.75 16 11 C -0.13 -1.59 5.49 -26.60 -0.15 -1.73 16 12 C -0.11 -1.58 5.40 -26.52 -0.14 -1.72 16 13 C -0.13 -2.30 5.33 -26.29 -0.14 -2.44 16 14 C 0.16 2.89 2.29 -67.76 -0.16 2.74 16 15 H 0.07 1.32 3.29 -51.93 -0.17 1.15 16 16 N -0.75 -16.77 4.93 -53.26 -0.26 -17.03 16 17 C -0.24 -6.55 10.37 -15.06 -0.16 -6.70 16 18 H 0.09 2.59 8.06 -52.49 -0.42 2.16 16 19 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 20 N -0.93 -28.57 13.97 55.49 0.78 -27.79 16 21 Si 0.88 21.68 27.74 -169.99 -4.71 16.96 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.28 -6.38 6.52 56.52 0.37 -6.02 16 25 C 0.10 1.56 5.51 -4.45 -0.02 1.53 16 26 C -0.13 -1.07 9.75 -26.70 -0.26 -1.33 16 27 C -0.14 -1.14 7.42 -26.70 -0.20 -1.34 16 28 O 0.10 1.13 10.97 17.17 0.19 1.32 16 29 N -0.36 -4.32 12.07 33.42 0.40 -3.92 16 30 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.10 1.27 6.07 -51.92 -0.32 0.96 16 35 H 0.07 0.77 4.55 -51.93 -0.24 0.54 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.77 2.92 -51.93 -0.15 0.62 16 38 H 0.08 1.17 5.47 -51.93 -0.28 0.89 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.73 5.37 -51.93 -0.28 0.45 16 42 H 0.07 1.36 8.10 -51.93 -0.42 0.94 16 43 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 44 H 0.36 8.10 5.66 -40.82 -0.23 7.87 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.09 1.49 6.75 -51.93 -0.35 1.14 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 48 H 0.12 1.07 7.79 -51.92 -0.40 0.67 16 49 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 50 H 0.12 0.76 8.00 -51.93 -0.42 0.34 16 51 H 0.11 0.91 7.48 -51.92 -0.39 0.52 16 LS Contribution 382.75 15.07 5.77 5.77 Total: -1.00 -31.86 382.75 -8.03 -39.89 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.45 Total: 9.93 kcal Atomic # 6 Polarization: -5.99 SS G_CDS: -2.53 Total: -8.52 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: 0.62 Total: -56.75 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.28 Total: -7.27 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -31.86 -8.03 -39.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088368867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.910 kcal (2) G-P(sol) polarization free energy of solvation -31.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds