Wall clock time and date at job start Wed Apr 1 2020 04:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.41377 * 126.80496 * 2 1 4 4 C 1.35448 * 103.98704 * 179.97438 * 3 2 1 5 5 C 1.50698 * 126.77546 * 179.97438 * 4 3 2 6 6 C 1.50702 * 115.54881 * 330.11087 * 5 4 3 7 7 O 1.21277 * 119.99965 * 127.15392 * 6 5 4 8 8 N 1.34781 * 119.99968 * 307.15110 * 6 5 4 9 9 C 1.46958 * 120.36305 * 354.25398 * 8 6 5 10 10 C 1.52333 * 109.09999 * 291.65188 * 9 8 6 11 11 C 1.53807 * 109.15896 * 287.31154 * 10 9 8 12 12 C 1.52439 * 109.40981 * 77.83839 * 11 10 9 13 13 C 1.53958 * 110.72756 * 246.26596 * 12 11 10 14 14 C 1.52882 * 109.72500 * 44.36287 * 13 12 11 15 15 H 1.08996 * 109.48688 * 312.89973 * 14 13 12 16 16 N 1.46504 * 109.48554 * 192.86425 * 14 13 12 17 17 C 1.36932 * 120.00015 * 84.75996 * 16 14 13 18 18 H 1.07999 * 120.00327 * 0.27728 * 17 16 14 19 19 C 1.38816 * 120.00355 * 180.27415 * 17 16 14 20 20 N 1.31611 * 120.00392 * 179.97438 * 19 17 16 21 21 Si 1.86800 * 119.99377 * 0.02562 * 19 17 16 22 22 H 1.48498 * 109.47261 * 90.00071 * 21 19 17 23 23 H 1.48500 * 109.46971 * 209.99826 * 21 19 17 24 24 H 1.48500 * 109.47528 * 329.99660 * 21 19 17 25 25 C 1.45319 * 120.37522 * 174.25965 * 8 6 5 26 26 C 1.52994 * 117.49986 * 115.78510 * 5 4 3 27 27 C 1.53001 * 117.49737 * 184.44192 * 5 4 3 28 28 O 1.34044 * 106.44501 * 0.23421 * 4 3 2 29 29 N 1.20916 * 111.56952 * 359.57142 * 28 4 3 30 30 H 1.08997 * 109.47465 * 90.00458 * 1 2 3 31 31 H 1.09007 * 109.47403 * 210.00124 * 1 2 3 32 32 H 1.08994 * 109.47059 * 330.00324 * 1 2 3 33 33 H 1.08000 * 128.00390 * 359.95948 * 3 2 1 34 34 H 1.09008 * 109.53321 * 171.76355 * 9 8 6 35 35 H 1.09003 * 109.59582 * 51.57732 * 9 8 6 36 36 H 1.09000 * 109.52915 * 167.40335 * 10 9 8 37 37 H 1.09001 * 109.57683 * 47.24153 * 10 9 8 38 38 H 1.09000 * 109.47582 * 317.85698 * 11 10 9 39 39 H 1.08998 * 109.47732 * 197.82359 * 11 10 9 40 40 H 1.09006 * 109.22585 * 125.94638 * 12 11 10 41 41 H 1.09001 * 109.19749 * 6.56301 * 12 11 10 42 42 H 1.09006 * 109.43032 * 284.28790 * 13 12 11 43 43 H 1.08999 * 109.43311 * 164.44312 * 13 12 11 44 44 H 0.96996 * 119.99735 * 265.03894 * 16 14 13 45 45 H 0.97000 * 120.00351 * 180.02562 * 20 19 17 46 46 H 1.08994 * 109.65752 * 16.89281 * 25 8 6 47 47 H 1.09005 * 109.67818 * 256.36575 * 25 8 6 48 48 H 1.09008 * 117.49994 * 215.00152 * 26 5 4 49 49 H 1.09005 * 117.50166 * 0.02562 * 26 5 4 50 50 H 1.08998 * 117.49901 * 359.97438 * 27 5 4 51 51 H 1.09008 * 117.49812 * 144.99437 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3540 1.1320 0.0000 4 6 3.6025 0.6067 0.0006 5 6 4.9022 1.3694 0.0003 6 6 4.8662 2.7146 -0.6782 7 8 5.2541 3.7013 -0.0893 8 7 4.4030 2.8211 -1.9394 9 6 4.0494 1.6175 -2.7050 10 6 5.3183 0.8343 -3.0166 11 6 6.1208 1.5817 -4.0951 12 6 6.8572 2.7541 -3.4571 13 6 6.3045 4.0932 -3.9781 14 6 4.7764 4.0489 -3.9957 15 1 4.4449 3.1177 -4.4549 16 7 4.2635 5.1838 -4.7673 17 6 4.1555 5.0929 -6.1293 18 1 4.4442 4.1830 -6.6344 19 6 3.6748 6.1702 -6.8610 20 7 3.5715 6.0830 -8.1701 21 14 3.1761 7.7443 -5.9874 22 1 4.3485 8.6506 -5.8926 23 1 2.0937 8.4135 -6.7528 24 1 2.6893 7.4200 -4.6224 25 6 4.2478 4.1271 -2.5574 26 6 5.8100 1.2187 1.2225 27 6 6.1963 0.5599 -0.1040 28 8 3.4537 -0.7254 -0.0044 29 7 2.2868 -1.0424 0.0007 30 1 -0.3634 -0.0001 -1.0276 31 1 -0.3634 -0.8900 0.5139 32 1 -0.3633 0.8900 0.5138 33 1 2.0710 2.1742 -0.0006 34 1 3.5624 1.9078 -3.6360 35 1 3.3727 0.9965 -2.1179 36 1 5.0536 -0.1580 -3.3817 37 1 5.9211 0.7411 -2.1132 38 1 5.4409 1.9532 -4.8618 39 1 6.8426 0.9017 -4.5475 40 1 7.9181 2.6855 -3.6981 41 1 6.7313 2.7105 -2.3753 42 1 6.6738 4.2694 -4.9885 43 1 6.6363 4.9009 -3.3257 44 1 4.0042 6.0011 -4.3136 45 1 3.2360 6.8360 -8.6814 46 1 4.8175 4.8681 -1.9968 47 1 3.1939 4.4051 -2.5683 48 1 6.3813 2.0925 1.5360 49 1 5.4674 0.5675 2.0268 50 1 6.1076 -0.5243 -0.1720 51 1 7.0217 1.0003 -0.6634 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001088368867.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:35 Heat of formation + Delta-G solvation = 66.872848 kcal Electronic energy + Delta-G solvation = -33123.678053 eV Core-core repulsion = 29027.731097 eV Total energy + Delta-G solvation = -4095.946956 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -46.04870 -42.02425 -39.40290 -37.84118 -36.60946 -35.80951 -35.13009 -34.04344 -32.57744 -32.01972 -29.65860 -29.23807 -27.57634 -26.23433 -24.75098 -24.32881 -24.18421 -23.37400 -22.74601 -21.68127 -20.38592 -19.89402 -19.56743 -18.86923 -18.62595 -17.72116 -17.58109 -16.99410 -16.47020 -16.19169 -15.81278 -15.39732 -15.32079 -15.12066 -14.95999 -14.71285 -14.59848 -14.34415 -14.21683 -14.03957 -13.96134 -13.84229 -13.53821 -13.24557 -13.10338 -12.89267 -12.68121 -12.52547 -12.46563 -12.35594 -12.23359 -12.11350 -11.98340 -11.82117 -11.63639 -11.59199 -11.44330 -11.21498 -11.02847 -10.97425 -10.82899 -10.16940 -9.63885 -9.28432 -8.01879 -5.35425 0.31861 1.15717 1.18653 1.38019 1.40158 1.46901 1.72065 2.04927 2.48168 2.64841 3.13227 3.19947 3.27774 3.29997 3.57046 3.65298 3.73256 3.82180 3.92504 3.98903 4.01077 4.09826 4.20271 4.21576 4.30903 4.44813 4.47029 4.52895 4.57948 4.64387 4.66175 4.66993 4.76769 4.78804 4.81491 4.83416 4.85234 4.92051 4.96483 5.08204 5.12144 5.20135 5.22237 5.24913 5.37069 5.40479 5.48424 5.62640 5.78440 6.21422 6.28150 6.97999 7.07357 7.20580 7.82456 8.00760 9.19314 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012907 B = 0.003552 C = 0.003240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2168.919599 B = 7881.138284 C = 8640.882314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.021 3.979 3 C -0.232 4.232 4 C 0.025 3.975 5 C -0.107 4.107 6 C 0.563 3.437 7 O -0.563 6.563 8 N -0.581 5.581 9 C 0.099 3.901 10 C -0.143 4.143 11 C -0.125 4.125 12 C -0.106 4.106 13 C -0.129 4.129 14 C 0.160 3.840 15 H 0.075 0.925 16 N -0.751 5.751 17 C -0.222 4.222 18 H 0.061 0.939 19 C -0.059 4.059 20 N -0.982 5.982 21 Si 0.947 3.053 22 H -0.283 1.283 23 H -0.297 1.297 24 H -0.252 1.252 25 C 0.111 3.889 26 C -0.118 4.118 27 C -0.128 4.128 28 O 0.103 5.897 29 N -0.385 5.385 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.169 0.831 34 H 0.082 0.918 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.093 0.907 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.363 0.637 45 H 0.257 0.743 46 H 0.080 0.920 47 H 0.065 0.935 48 H 0.113 0.887 49 H 0.125 0.875 50 H 0.137 0.863 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.372 -16.027 21.278 26.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.137 4.137 3 C -0.254 4.254 4 C -0.039 4.039 5 C -0.112 4.112 6 C 0.350 3.650 7 O -0.442 6.442 8 N -0.311 5.311 9 C -0.023 4.023 10 C -0.181 4.181 11 C -0.162 4.162 12 C -0.145 4.145 13 C -0.169 4.169 14 C 0.052 3.948 15 H 0.093 0.907 16 N -0.394 5.394 17 C -0.352 4.352 18 H 0.079 0.921 19 C -0.251 4.251 20 N -0.633 5.633 21 Si 0.775 3.225 22 H -0.210 1.210 23 H -0.224 1.224 24 H -0.177 1.177 25 C -0.013 4.013 26 C -0.156 4.156 27 C -0.164 4.164 28 O 0.038 5.962 29 N -0.091 5.091 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.115 0.885 33 H 0.187 0.813 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.072 0.928 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.059 0.941 43 H 0.065 0.935 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.098 0.902 47 H 0.084 0.916 48 H 0.131 0.869 49 H 0.143 0.857 50 H 0.155 0.845 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.325 -16.924 21.363 27.286 hybrid contribution -0.612 2.468 -0.467 2.585 sum 0.714 -14.456 20.895 25.419 Atomic orbital electron populations 1.20328 0.84014 1.04830 1.04420 1.23988 1.00327 0.88039 1.01316 1.22451 0.91241 1.01475 1.10205 1.22774 0.95473 0.83687 1.01939 1.19323 0.88761 0.93883 1.09208 1.19159 0.76457 0.88445 0.80889 1.90705 1.49006 1.39046 1.65422 1.47549 1.63332 1.07309 1.12939 1.21951 0.98228 0.85416 0.96705 1.22395 0.96218 0.99022 1.00469 1.21781 0.99490 0.96844 0.98075 1.21620 0.99335 0.93559 0.99944 1.22262 0.97225 0.97592 0.99843 1.21064 0.92472 0.91427 0.89802 0.90712 1.42719 1.78503 1.14724 1.03434 1.18937 1.34343 0.99354 0.82608 0.92112 1.25384 1.02457 1.01383 0.95829 1.69859 1.54451 1.32594 1.06365 0.85523 0.77651 0.80464 0.78824 1.20955 1.22377 1.17693 1.21614 1.00927 0.85312 0.93457 1.23356 0.97521 1.03548 0.91134 1.23435 0.92517 1.00969 0.99520 1.84788 1.21640 1.21841 1.67920 1.73857 0.89452 1.24318 1.21520 0.89213 0.89863 0.88540 0.81339 0.89951 0.90402 0.89123 0.88856 0.92824 0.90637 0.91997 0.92152 0.94119 0.93473 0.80419 0.93422 0.90164 0.91639 0.86874 0.85667 0.84489 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.04 10.47 71.24 0.75 -0.29 16 2 C 0.02 0.41 7.33 43.58 0.32 0.73 16 3 C -0.23 -4.57 9.44 22.40 0.21 -4.36 16 4 C 0.03 0.47 4.60 25.04 0.12 0.59 16 5 C -0.11 -1.94 1.48 -53.68 -0.08 -2.02 16 6 C 0.56 14.01 5.17 87.66 0.45 14.46 16 7 O -0.56 -17.80 15.85 -3.02 -0.05 -17.85 16 8 N -0.58 -14.63 1.68 -824.00 -1.39 -16.02 16 9 C 0.10 2.19 4.91 86.07 0.42 2.62 16 10 C -0.14 -2.68 5.46 30.65 0.17 -2.51 16 11 C -0.12 -2.91 5.49 30.68 0.17 -2.74 16 12 C -0.11 -2.77 5.40 30.73 0.17 -2.60 16 13 C -0.13 -4.41 5.33 30.88 0.16 -4.25 16 14 C 0.16 5.75 2.29 45.10 0.10 5.85 16 15 H 0.08 2.72 3.29 -2.39 -0.01 2.71 16 16 N -0.75 -33.90 4.93 -322.43 -1.59 -35.49 16 17 C -0.22 -12.19 10.37 84.04 0.87 -11.32 16 18 H 0.06 3.65 8.06 -2.91 -0.02 3.62 16 19 C -0.06 -3.41 5.50 84.86 0.47 -2.94 16 20 N -0.98 -62.06 13.97 21.65 0.30 -61.76 16 21 Si 0.95 45.19 27.74 68.60 1.90 47.09 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 24 H -0.25 -10.87 6.52 99.48 0.65 -10.22 16 25 C 0.11 3.44 5.51 86.75 0.48 3.92 16 26 C -0.12 -1.65 9.75 30.61 0.30 -1.35 16 27 C -0.13 -1.56 7.42 30.62 0.23 -1.34 16 28 O 0.10 2.02 10.97 71.61 0.79 2.80 16 29 N -0.38 -8.37 12.07 -49.56 -0.60 -8.96 16 30 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.17 3.29 8.06 -2.91 -0.02 3.27 16 34 H 0.08 2.10 6.07 -2.38 -0.01 2.09 16 35 H 0.08 1.61 4.55 -2.39 -0.01 1.60 16 36 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 37 H 0.09 1.49 2.92 -2.39 -0.01 1.48 16 38 H 0.05 1.56 5.47 -2.39 -0.01 1.55 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 41 H 0.06 1.50 5.37 -2.39 -0.01 1.49 16 42 H 0.04 1.61 8.10 -2.38 -0.02 1.59 16 43 H 0.05 1.63 7.87 -2.39 -0.02 1.61 16 44 H 0.36 16.04 5.66 -92.71 -0.52 15.51 16 45 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 46 H 0.08 2.66 6.75 -2.39 -0.02 2.65 16 47 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 48 H 0.11 1.77 7.79 -2.38 -0.02 1.75 16 49 H 0.13 1.33 8.14 -2.38 -0.02 1.31 16 50 H 0.14 1.17 8.00 -2.39 -0.02 1.15 16 51 H 0.12 1.42 7.48 -2.38 -0.02 1.40 16 Total: -1.00 -70.38 382.75 5.06 -65.32 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.39 Total: 32.41 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 5.30 Total: -7.55 kcal Atomic # 7 Polarization: -118.96 SS G_CDS: -3.27 Total: -122.23 kcal Atomic # 8 Polarization: -15.78 SS G_CDS: 0.74 Total: -15.05 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 1.90 Total: 47.09 kcal Total: -70.38 5.06 -65.32 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088368867.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.196 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds