Wall clock time and date at job start Wed Apr 1 2020 04:29:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41375 * 126.80265 * 2 1 4 4 C 1.35454 * 103.98603 * 180.16439 * 3 2 1 5 5 C 1.50702 * 126.77884 * 179.91111 * 4 3 2 6 6 C 1.50698 * 115.54529 * 330.04651 * 5 4 3 7 7 O 1.21289 * 120.00124 * 125.67875 * 6 5 4 8 8 N 1.34779 * 120.00416 * 305.67668 * 6 5 4 9 9 C 1.46195 * 120.01531 * 354.41538 * 8 6 5 10 10 C 1.53410 * 110.06059 * 292.71185 * 9 8 6 11 11 C 1.53438 * 108.66512 * 316.64150 * 10 9 8 12 12 C 1.53117 * 109.34413 * 287.54898 * 11 10 9 13 13 C 1.52475 * 109.67307 * 77.03192 * 12 11 10 14 14 C 1.53496 * 109.14633 * 43.92896 * 13 12 11 15 15 H 1.09001 * 109.63573 * 5.68705 * 14 13 12 16 16 N 1.46505 * 109.63652 * 126.09057 * 14 13 12 17 17 C 1.36926 * 120.00043 * 274.99838 * 16 14 13 18 18 H 1.08007 * 120.00452 * 0.02562 * 17 16 14 19 19 C 1.38814 * 120.00065 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99660 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00276 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47383 * 0.02562 * 21 19 17 23 23 H 1.48507 * 109.47186 * 120.00557 * 21 19 17 24 24 H 1.48495 * 109.47640 * 240.00674 * 21 19 17 25 25 C 1.47136 * 120.18875 * 174.28736 * 8 6 5 26 26 C 1.52990 * 117.50178 * 115.71758 * 5 4 3 27 27 C 1.52999 * 117.49984 * 184.38052 * 5 4 3 28 28 O 1.34047 * 106.44302 * 359.64544 * 4 3 2 29 29 N 1.20919 * 111.56632 * 0.23978 * 28 4 3 30 30 H 1.09005 * 109.47101 * 265.25685 * 1 2 3 31 31 H 1.09005 * 109.47205 * 25.25593 * 1 2 3 32 32 H 1.09003 * 109.47200 * 145.25977 * 1 2 3 33 33 H 1.07998 * 128.00852 * 0.07575 * 3 2 1 34 34 H 1.09001 * 109.23290 * 172.63342 * 9 8 6 35 35 H 1.09002 * 109.56318 * 52.99667 * 9 8 6 36 36 H 1.09003 * 109.63730 * 196.83624 * 10 9 8 37 37 H 1.09010 * 109.63216 * 76.43969 * 10 9 8 38 38 H 1.09000 * 109.49251 * 47.50940 * 11 10 9 39 39 H 1.08997 * 109.49358 * 167.56553 * 11 10 9 40 40 H 1.09001 * 109.44208 * 197.09598 * 12 11 10 41 41 H 1.09004 * 109.44005 * 317.01375 * 12 11 10 42 42 H 1.08996 * 109.52314 * 163.82454 * 13 12 11 43 43 H 1.08999 * 109.52485 * 284.02904 * 13 12 11 44 44 H 0.97000 * 119.99452 * 95.00132 * 16 14 13 45 45 H 0.96999 * 119.99549 * 179.97438 * 20 19 17 46 46 H 1.08998 * 109.84456 * 348.37550 * 25 8 6 47 47 H 1.08996 * 109.90542 * 227.41639 * 25 8 6 48 48 H 1.08998 * 117.50287 * 215.00364 * 26 5 4 49 49 H 1.09008 * 117.50028 * 0.02562 * 26 5 4 50 50 H 1.09002 * 117.49551 * 359.97015 * 27 5 4 51 51 H 1.08994 * 117.50065 * 144.99099 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1320 0.0000 4 6 3.6024 0.6067 -0.0038 5 6 4.9022 1.3694 -0.0073 6 6 4.8645 2.7146 -0.6857 7 8 5.2288 3.7054 -0.0885 8 7 4.4260 2.8167 -1.9561 9 6 4.1026 1.6111 -2.7172 10 6 5.3779 0.8034 -2.9905 11 6 6.4910 1.7713 -3.4130 12 6 6.2093 2.2812 -4.8290 13 6 5.1173 3.3444 -4.7840 14 6 5.3929 4.2998 -3.6147 15 1 6.3520 4.0539 -3.1589 16 7 5.4196 5.6808 -4.1031 17 6 6.5741 6.2001 -4.6252 18 1 7.4649 5.5916 -4.6773 19 6 6.5993 7.5084 -5.0884 20 7 5.5136 8.2499 -5.0254 21 14 8.1743 8.2171 -5.8000 22 1 9.2438 7.1878 -5.7575 23 1 7.9402 8.6293 -7.2074 24 1 8.5911 9.3976 -5.0014 25 6 4.2684 4.1397 -2.5803 26 6 5.8131 1.2188 1.2126 27 6 6.1960 0.5599 -0.1150 28 8 3.4537 -0.7254 0.0022 29 7 2.2867 -1.0423 0.0043 30 1 -0.3633 -0.0850 1.0242 31 1 -0.3634 0.9295 -0.4385 32 1 -0.3634 -0.8445 -0.5856 33 1 2.0709 2.1742 0.0011 34 1 3.6456 1.8965 -3.6648 35 1 3.4015 0.9986 -2.1503 36 1 5.1930 0.0863 -3.7903 37 1 5.6770 0.2739 -2.0858 38 1 6.5218 2.6140 -2.7224 39 1 7.4495 1.2526 -3.3968 40 1 7.1189 2.7128 -5.2468 41 1 5.8811 1.4512 -5.4548 42 1 5.1153 3.9043 -5.7191 43 1 4.1484 2.8656 -4.6427 44 1 4.6195 6.2272 -4.0566 45 1 5.5313 9.1642 -5.3488 46 1 4.3494 4.9186 -1.8221 47 1 3.2991 4.2038 -3.0745 48 1 6.3851 2.0925 1.5246 49 1 5.4725 0.5676 2.0177 50 1 6.1071 -0.5243 -0.1827 51 1 7.0200 1.0003 -0.6764 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088368868.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:29:40 Heat of formation + Delta-G solvation = 89.034936 kcal Electronic energy + Delta-G solvation = -33021.620394 eV Core-core repulsion = 28926.634458 eV Total energy + Delta-G solvation = -4094.985935 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -45.22088 -40.86539 -38.21099 -36.83092 -35.09830 -34.79528 -33.83543 -32.10374 -31.71819 -29.53139 -28.97299 -27.59275 -26.82316 -25.07853 -23.61697 -23.37873 -23.03671 -22.16170 -21.38984 -20.59166 -19.39404 -18.71492 -17.90668 -17.56588 -17.21962 -16.60134 -16.25427 -15.64943 -15.29266 -15.01539 -14.64135 -14.41947 -14.10340 -13.81584 -13.66592 -13.54038 -13.46451 -13.24827 -13.19570 -12.95210 -12.71538 -12.46461 -12.13061 -12.07758 -11.84831 -11.59356 -11.53184 -11.42374 -11.24792 -10.91747 -10.88233 -10.76807 -10.56251 -10.36322 -10.23456 -10.12563 -10.05549 -9.86976 -9.77691 -9.59293 -9.26834 -8.85529 -8.46067 -6.94768 -5.76333 -3.05000 1.13386 1.95377 2.22169 2.78962 3.01259 3.43607 3.49030 3.50011 3.51480 3.91943 3.96320 4.24361 4.45548 4.52825 4.60791 4.77598 4.85928 4.96172 5.03791 5.04616 5.16964 5.21924 5.27361 5.29801 5.33651 5.44952 5.45700 5.50251 5.51500 5.60669 5.62284 5.70045 5.72199 5.78227 5.82076 5.84109 5.85140 5.99420 6.06422 6.11469 6.24251 6.31615 6.44016 6.59929 6.68777 6.71243 6.92893 7.14731 7.44578 7.72198 8.00056 8.16628 8.42144 9.53189 10.09433 10.43985 11.46334 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.003076 C = 0.003015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.448573 B = 9100.428792 C = 9285.947741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.021 3.979 3 C -0.221 4.221 4 C 0.022 3.978 5 C -0.092 4.092 6 C 0.558 3.442 7 O -0.521 6.521 8 N -0.589 5.589 9 C 0.096 3.904 10 C -0.146 4.146 11 C -0.133 4.133 12 C -0.112 4.112 13 C -0.150 4.150 14 C 0.160 3.840 15 H 0.064 0.936 16 N -0.722 5.722 17 C -0.232 4.232 18 H 0.070 0.930 19 C -0.013 4.013 20 N -0.932 5.932 21 Si 0.905 3.095 22 H -0.281 1.281 23 H -0.292 1.292 24 H -0.292 1.292 25 C 0.104 3.896 26 C -0.128 4.128 27 C -0.142 4.142 28 O 0.101 5.899 29 N -0.365 5.365 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.170 0.830 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.053 0.947 40 H 0.059 0.941 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.051 0.949 44 H 0.383 0.617 45 H 0.254 0.746 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.120 0.880 49 H 0.107 0.893 50 H 0.114 0.886 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.404 -20.416 9.788 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.137 4.137 3 C -0.242 4.242 4 C -0.042 4.042 5 C -0.097 4.097 6 C 0.343 3.657 7 O -0.397 6.397 8 N -0.321 5.321 9 C -0.027 4.027 10 C -0.184 4.184 11 C -0.170 4.170 12 C -0.149 4.149 13 C -0.190 4.190 14 C 0.050 3.950 15 H 0.082 0.918 16 N -0.363 5.363 17 C -0.364 4.364 18 H 0.088 0.912 19 C -0.209 4.209 20 N -0.581 5.581 21 Si 0.736 3.264 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.018 4.018 26 C -0.165 4.165 27 C -0.179 4.179 28 O 0.035 5.965 29 N -0.071 5.071 30 H 0.098 0.902 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.188 0.812 34 H 0.114 0.886 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.101 0.899 39 H 0.072 0.928 40 H 0.078 0.922 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.069 0.931 44 H 0.216 0.784 45 H 0.064 0.936 46 H 0.113 0.887 47 H 0.090 0.910 48 H 0.138 0.862 49 H 0.125 0.875 50 H 0.133 0.867 51 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.277 -21.136 10.034 24.224 hybrid contribution 0.332 1.402 -0.674 1.590 sum -5.945 -19.734 9.361 22.636 Atomic orbital electron populations 1.20181 0.85799 1.03961 1.03407 1.23562 0.99073 0.88565 1.02491 1.22351 0.90821 1.01315 1.09755 1.22831 0.95621 0.83600 1.02151 1.19501 0.87578 0.95135 1.07466 1.18807 0.77706 0.87581 0.81558 1.90766 1.46956 1.37101 1.64843 1.47833 1.64698 1.07783 1.11740 1.21956 0.97372 0.86073 0.97288 1.22402 0.95811 0.98170 1.02038 1.21990 0.97014 0.99471 0.98553 1.21457 0.99777 0.98012 0.95690 1.22751 0.96948 0.97166 1.02114 1.21076 0.96326 0.86443 0.91165 0.91839 1.42371 1.12370 1.08206 1.73330 1.19217 0.89849 0.95202 1.32090 0.91230 1.24726 0.97213 0.96774 1.02219 1.69669 1.26862 1.08703 1.52851 0.86148 0.82852 0.78955 0.78435 1.20592 1.21950 1.21883 1.22357 0.99387 0.82912 0.97166 1.23264 0.98854 1.03554 0.90835 1.23235 0.94598 0.99792 1.00303 1.84807 1.21799 1.22013 1.67856 1.73852 0.89090 1.23753 1.20399 0.90174 0.89828 0.90457 0.81228 0.88604 0.91948 0.91076 0.90919 0.89896 0.92790 0.92228 0.93147 0.90922 0.93066 0.78389 0.93599 0.88662 0.90959 0.86201 0.87468 0.86742 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.47 36.00 0.38 -0.16 16 2 C 0.02 0.22 7.33 -82.10 -0.60 -0.38 16 3 C -0.22 -2.35 9.56 -39.38 -0.38 -2.73 16 4 C 0.02 0.23 4.62 -35.30 -0.16 0.07 16 5 C -0.09 -1.01 1.37 -156.82 -0.22 -1.23 16 6 C 0.56 7.99 5.87 -10.99 -0.06 7.92 16 7 O -0.52 -9.51 15.89 5.55 0.09 -9.42 16 8 N -0.59 -8.00 1.72 -172.79 -0.30 -8.30 16 9 C 0.10 1.09 4.89 -3.99 -0.02 1.07 16 10 C -0.15 -1.54 5.38 -26.29 -0.14 -1.68 16 11 C -0.13 -1.70 5.40 -26.44 -0.14 -1.84 16 12 C -0.11 -1.60 5.67 -26.94 -0.15 -1.75 16 13 C -0.15 -2.48 5.26 -26.74 -0.14 -2.62 16 14 C 0.16 3.05 2.40 -67.35 -0.16 2.89 16 15 H 0.06 1.31 5.40 -51.93 -0.28 1.03 16 16 N -0.72 -17.57 4.99 -52.86 -0.26 -17.84 16 17 C -0.23 -6.35 9.94 -15.06 -0.15 -6.50 16 18 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 19 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 20 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 21 Si 0.90 22.41 29.55 -169.99 -5.02 17.39 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.10 1.71 5.40 -3.37 -0.02 1.69 16 26 C -0.13 -1.20 9.75 -26.70 -0.26 -1.46 16 27 C -0.14 -1.24 6.91 -26.69 -0.18 -1.43 16 28 O 0.10 1.13 10.97 17.16 0.19 1.31 16 29 N -0.37 -4.29 12.07 33.42 0.40 -3.88 16 30 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.17 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.10 1.10 5.09 -51.93 -0.26 0.83 16 35 H 0.06 0.68 4.73 -51.93 -0.25 0.44 16 36 H 0.07 0.68 7.89 -51.93 -0.41 0.28 16 37 H 0.07 0.69 4.12 -51.92 -0.21 0.48 16 38 H 0.08 1.26 3.69 -51.93 -0.19 1.07 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 41 H 0.05 0.64 7.85 -51.93 -0.41 0.23 16 42 H 0.07 1.42 7.88 -51.93 -0.41 1.01 16 43 H 0.05 0.74 4.51 -51.93 -0.23 0.50 16 44 H 0.38 9.89 7.80 -40.82 -0.32 9.58 16 45 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.10 1.80 7.10 -51.93 -0.37 1.43 16 47 H 0.07 1.09 7.97 -51.93 -0.41 0.68 16 48 H 0.12 1.23 7.81 -51.93 -0.41 0.82 16 49 H 0.11 0.83 8.14 -51.92 -0.42 0.41 16 50 H 0.11 0.81 7.95 -51.93 -0.41 0.40 16 51 H 0.11 1.04 8.00 -51.93 -0.42 0.62 16 LS Contribution 386.13 15.07 5.82 5.82 Total: -1.00 -31.88 386.13 -8.37 -40.25 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -7.50 Total: 10.46 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -2.51 Total: -8.61 kcal Atomic # 7 Polarization: -57.77 SS G_CDS: 0.57 Total: -57.20 kcal Atomic # 8 Polarization: -8.38 SS G_CDS: 0.28 Total: -8.11 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.39 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.88 -8.37 -40.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088368868.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.285 kcal (2) G-P(sol) polarization free energy of solvation -31.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds